Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------ANAC58                                                             <---------ANAC58                                                             <---------ANAC46                                                        --------->ATHB12                                                      <---------TOE2(3)                                                   <---------YAB1                                                 -------->ATHB1                                                 <---------ICU4                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <---------AHL20(2)                                                --------->ICU4                                                --------->AHL20(2)     <---------WRKY18(1)                     --------->AHL20(2)         <---------ANAC46  <---------ANAC58         <---------YAB1    <---------AHL20(2)   --------->ARR11(3)  <---------ANAC58    ------->TEIL          --------->AHL20(2)    --------->ARR14(2)          <------ ----->AtMYB61<----------DOF2   ----------->GT1 <---------ATHB51  <---------ARR14(2)----------->GT1   caatgcttgagcgaaactttgatgaaactctgatttgtataatcttttaaattattaatgtttgagtggatattgggtttacaaatttgttaaaaacttt  23636300                                                                         <---------------AtSPL8                         <---------TOE1(3)                               --------------->AtSPL8                         <---------TOE2(3)                            --------->AHL20(2)                        --------->MYB52(1)                        --------->ICU4                    --------->WOX13(1)             --------->AHL20(2)<---------YAB1              <---------AHL20(2)              --------->AHL20(2)  <---------YAB1              --------->AHL20(2)      --------->DAG2            <---------ANAC55(2)             --------->YAB1----------->GT1  <---------ANAC46    --------->ANAC55(2)   --------->YAB1 ---------->DOF2    <---------------AGL15 ----------->GT1      <-------TEIL        --------->YAB1 ----DOF2    --------->AHL20(2)      ---------->DOF2      --------->AHL20(2)<-----------GT1         <   ggtgaaagtagagaattaaaatcaattaagggtaacaaataaagttgtttatataaaatataaaatacatgattatatgtacaattcataatattagtat  23636400                               ----------->HVH21                           <---------ANAC55(1)                                                -------                           --------->ANAC55(1)                                                <------                           <---------ANAC55(2)                                      <---------ANAC46                     --------->AHL20(2)                                           --------->MYB52(1)                     <---------AHL20(2)                                      --------->ARR11(3)------                <---------AHL20(2)                                           <---------GLK1(2)-------                --------->AHL20(2)              --------->ARR11(3)     <---------AHL20(2)     <------      --------->HSFB2a(2)  --------->ANAC55(2)  <---------ARR11(3)    <---------AHL20(2)      -------      <---------HSFB2a(2) <-------TEIL         --------->RVE1(1)      --------->AHL20(2)     <------- ---------YAB1 --------->AHL20(2)              --------->CCA1(1)----------->GT1  ----------->HVH21   atatgatactagaagaaaaaaatttaaatacgtatgacaccgagtataaatatctaatgcaaaatacagaaaataaatagatactgacggataattccgg  23636500      <---------TOE1(3)      <---------TOE2(3) -->HSFB2a(2) ---HSFB2a(2)                              --------->ZAT14 --->LBD16                          <---------ARR14(2) -->ANAC46          <-----------GT1 --------->ARR14(2)                             <---------ANAC46 ---ANAC55(2) <---------TOE2(3)  --------->HSFB2a(2)                      --------->ANAC58 -->ANAC55(2)<-----------GT1     <---------HSFB2a(2)                      --------->ANAC58 --LBD16    <-----------GT1---------->DOF2<---------MYB52(1)              <---------ALFIN1   aacacatgaaggttttaacatttaacccataaatcccagaacccgttcagtatttgaatttagtttttttatggccacgctcgtttcgagtttgggcctg  23636600                                                  <---------At4g35610                  ----------->RAV1(1)   --------->AHL20(2)               --------->ANAC46         ----------->TBP           <-----------GT1              <---------AHL20(2)       --------->AHL20(2)           ----------->TBP       <---------AHL20(2)           --------->AHL20(2)   <---------RVE1(1)              <-----------TBP --------->At4g35610          --------->YAB1   <---------CCA1(1)            --------------->AGL15                --------->YAB1  <---------ARR11(3)           ----------------->AGL3  --------->ANAC55(2)--------->TOE1(3)       ---   gctggatatttttttacccacaacaaatctctacccatatatataaatgggcctctcacttaataagcccataataccctaacatcatggagttggaaga  23636700                                                                                                  <--                                                                                                  ---                            --------->ANAC55(2)                                                   <--                  <---------TOE1(3)                                                               ---           ----------------->AGL1                                                            <------ZmHOX2a(2)           ------------>CBF <---------ANAC58                                                ---------           <-----------------AGL2                            <---------ZAT2                 <--------    --------->AHL20(2)      <---------ANAC58                 <---------At4g35610     <---------MYB46(3)    ----------->TBP        ------->TEIL                      --------->At4g35610     --------->MYB111(2)    <---------AHL20(2) <---------------AtSPL3       --------->ALFIN1                <--------P------>ZmHOX2a(2)  <-----------TBP <---------TOE2(3)    <----------DOF2       --------->ZAT2        <---------MYB52(1) -------->GT1--------->WOX13(1) *TSS   <---------DAG2<---------MYB46(3)       ----------->RAV1(1)<---   gggtatataaatggccaattagggttttgtacgtgctctcactttttctctcaagtggttcggagctgtttctaagaaaacaacaggtagttcggatcgg  23636800                                                                     <---------WOX13(1) -------ZAT2                                                <---------ZAT2 ------>ZAT2                                                --------->At4g35610 -------At4g35610                                           --------->ZAT2                 ------>ZmHOX2a(1) ------>At4g35610                                           <---------At4g35610           --------->ANAC55(2) >ARR14(2)                                             <---------At4g35610                --------->TOE2(3) -ARR14(2)                         ------>ZmHOX2a(1)   ----------->RAV1(2)                --------->TOE1(3) --------ARR10            <-------TEIL            <----------DOF2  --------->ATHB12       <---------ANAC55(2)   agctacgcttgcaaaactcaaaacatggttcgtcatcctctaatctctatctctttcttctgagcttagtgattgtttacatctagatagttccttaact  23636900                     <---------ZAT6               <------MYB46(1)               <------MYB83              <---------MYB46(3)             <--------P                                                               <---------AHL20(2)             <---------ANAC46                                             <---------ANAC58            <---------MYB52(1)                                  --------->ATHB12    <---------YAB1          <-----------RAV1(1)                                 <---------WOX13(1)   --------->AHL20(2)         <---------ANAC46                                   --------->ATHB12----------->GT1       --------->ARR14(2)                                  <---------AHL20(2)    --------->ICU4       <---------ARR14(2)       <---------ANAC46           <---------YAB1 <---------ANAC58         <-   cgactctcgtttctggtgggtttgtgttagagtgacttagagaatgggttttgttagcaatttgattgattcgataacttgtgaatattatatgcatcat  23637000                  --------->At4g35610                  <---------At4g35610              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            --------->ARR14(2)            <---------ARR14(2)            --------->AGP1   ------>ZmHOX2a(2)            <---------ARR11(3)                                                                    ---            <---------AGP1 --------->ARR11(3)              --------->YAB1                         <--            --------->ARR11(3)        <-----------HVH21   --------->ICU4                       <-----           <---------CCA1(2)<------ZmHOX2a(2)             <---------YAB1                    <--------          ----------->ARR10<---------ARR11(3)           <---------ICU4                      ---------        ============================HOX2a_HOX2a        --------->ICU4                    --------->YAB1        ------>ZmHOX2a(1)  <---------AGP1<---------At4g35610 <---------YAB1            ------>ZmHOX2a(1)        =============HOX2a_HOX2a     --------->ALFIN1  <---------YAB1                 --------->TOE2(3)        ===========================HOX2a_HOX2a   <---------TOE2(3) <-------TEIL       --------->TOE1(3)       --------->TOE2(3)  <---------CCA1(2)      --------->MYB59--------->CCA1(2) <---------GLK1(1) --------YAB1--------->CCA1(2)       <-----------RAV1(1)--------->YAB1            --------->GLK1(1)   ggtgattctccttagatctgagctcattagatctcaaatgtgtcgctgatttaggtcatgatgatgatatacatagcagtagagatttccttaataataa  23637100                                                                ---------->DOF2                     <                            <-----------RAV1(2)      ----------->HVH21                             <- ------>ARR11(3)    <---------AHL20(2)             <---------At4g35610                             -- -------ARR11(3)----------->GT1                    --------->At4g35610                <---------WOX13(1) ------GT1 <---------AHL20(2)     --------->ALFIN1--------->GLK1(2)                  <---------ANAC58 -ICU4     --------->AHL20(2) --------->ANAC46  <---------HSFC1(2)          --------->ATHB12       <- >YAB1  --------->TOE2(3) <-----------GT1       --------->HSFC1(2)   ------->TEIL    <---------ANAC58   catctcttaacatttattttgttaaattttacaggcgaggggtttgaagaagcatctgaagaggcttaatgcgcctaagcattggatgcttgacaaactt  23637200  Previous    Next  AGI:  At5g58420.1    Description:  40S ribosomal protein S4 (RPS4D). Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4e, N-terminal and RNA-binding (InterPro:IPR013844); contains InterPro domain Ribosomal protein S4e, N-terminal (InterPro:IPR013843); contains InterPro domain Ribosomal protein S4e, central (InterPro:IPR013845); contains InterPro domain KOW (InterPro: Range:  from: 23636732    to: 23638320    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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