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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
--------->
ATHB12
<---------
TOE2(3)
<---------
YAB1
-------->
ATHB1
<---------
ICU4
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(2)
--------->
ICU4
--------->
AHL20(2)
<---------
WRKY18(1)
--------->
AHL20(2)
<---------
ANAC46
<---------
ANAC58
<---------
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ANAC58
------->
TEIL
--------->
AHL20(2)
--------->
ARR14(2)
<------
----->
AtMYB61
<----------
DOF2
----------->
GT1
<---------
ATHB51
<---------
ARR14(2)
----------->
GT1
caatgcttgagcgaaactttgatgaaactctgatttgtataatcttttaaattattaatgtttgagtggatattgggtttacaaatttgttaaaaacttt
23636300
<---------------
AtSPL8
<---------
TOE1(3)
--------------->
AtSPL8
<---------
TOE2(3)
--------->
AHL20(2)
--------->
MYB52(1)
--------->
ICU4
--------->
WOX13(1)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
DAG2
<---------
ANAC55(2)
--------->
YAB1
----------->
GT1
<---------
ANAC46
--------->
ANAC55(2)
--------->
YAB1
---------->
DOF2
<---------------
AGL15
----------->
GT1
<-------
TEIL
--------->
YAB1
----
DOF2
--------->
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
<-----------
GT1
<
ggtgaaagtagagaattaaaatcaattaagggtaacaaataaagttgtttatataaaatataaaatacatgattatatgtacaattcataatattagtat
23636400
----------->
HVH21
<---------
ANAC55(1)
-------
--------->
ANAC55(1)
<------
<---------
ANAC55(2)
<---------
ANAC46
--------->
AHL20(2)
--------->
MYB52(1)
<---------
AHL20(2)
--------->
ARR11(3)
------
<---------
AHL20(2)
<---------
GLK1(2)
-------
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<------
--------->
HSFB2a(2)
--------->
ANAC55(2)
<---------
ARR11(3)
<---------
AHL20(2)
-------
<---------
HSFB2a(2)
<-------
TEIL
--------->
RVE1(1)
--------->
AHL20(2)
<-------
---------
YAB1
--------->
AHL20(2)
--------->
CCA1(1)
----------->
GT1
----------->
HVH21
atatgatactagaagaaaaaaatttaaatacgtatgacaccgagtataaatatctaatgcaaaatacagaaaataaatagatactgacggataattccgg
23636500
<---------
TOE1(3)
<---------
TOE2(3)
-->
HSFB2a(2)
---
HSFB2a(2)
--------->
ZAT14
--->
LBD16
<---------
ARR14(2)
-->
ANAC46
<-----------
GT1
--------->
ARR14(2)
<---------
ANAC46
---
ANAC55(2)
<---------
TOE2(3)
--------->
HSFB2a(2)
--------->
ANAC58
-->
ANAC55(2)
<-----------
GT1
<---------
HSFB2a(2)
--------->
ANAC58
--
LBD16
<-----------
GT1
---------->
DOF2
<---------
MYB52(1)
<---------
ALFIN1
aacacatgaaggttttaacatttaacccataaatcccagaacccgttcagtatttgaatttagtttttttatggccacgctcgtttcgagtttgggcctg
23636600
<---------
At4g35610
----------->
RAV1(1)
--------->
AHL20(2)
--------->
ANAC46
----------->
TBP
<-----------
GT1
<---------
AHL20(2)
--------->
AHL20(2)
----------->
TBP
<---------
AHL20(2)
--------->
AHL20(2)
<---------
RVE1(1)
<-----------
TBP
--------->
At4g35610
--------->
YAB1
<---------
CCA1(1)
--------------->
AGL15
--------->
YAB1
<---------
ARR11(3)
----------------->
AGL3
--------->
ANAC55(2)
--------->
TOE1(3)
---
gctggatatttttttacccacaacaaatctctacccatatatataaatgggcctctcacttaataagcccataataccctaacatcatggagttggaaga
23636700
<--
---
--------->
ANAC55(2)
<--
<---------
TOE1(3)
---
----------------->
AGL1
<------
ZmHOX2a(2)
------------>
CBF
<---------
ANAC58
---------
<-----------------
AGL2
<---------
ZAT2
<--------
--------->
AHL20(2)
<---------
ANAC58
<---------
At4g35610
<---------
MYB46(3)
----------->
TBP
------->
TEIL
--------->
At4g35610
--------->
MYB111(2)
<---------
AHL20(2)
<---------------
AtSPL3
--------->
ALFIN1
<--------
P
------>
ZmHOX2a(2)
<-----------
TBP
<---------
TOE2(3)
<----------
DOF2
--------->
ZAT2
<---------
MYB52(1)
-------->
GT1
--------->
WOX13(1)
*
TSS
<---------
DAG2
<---------
MYB46(3)
----------->
RAV1(1)
<---
gggtatataaatggccaattagggttttgta
cgtgctctcactttttctctcaagtggttcggagctgtttctaagaaaacaacaggtagttcggatcgg
23636800
<---------
WOX13(1)
-------
ZAT2
<---------
ZAT2
------>
ZAT2
--------->
At4g35610
-------
At4g35610
--------->
ZAT2
------>
ZmHOX2a(1)
------>
At4g35610
<---------
At4g35610
--------->
ANAC55(2)
>
ARR14(2)
<---------
At4g35610
--------->
TOE2(3)
-
ARR14(2)
------>
ZmHOX2a(1)
----------->
RAV1(2)
--------->
TOE1(3)
--------
ARR10
<-------
TEIL
<----------
DOF2
--------->
ATHB12
<---------
ANAC55(2)
agctacgcttgcaaaactcaaaac
atg
gttcgtcatcctctaatctctatctctttcttctgagcttagtgattgtttacatctagatagttccttaact
23636900
<---------
ZAT6
<------
MYB46(1)
<------
MYB83
<---------
MYB46(3)
<--------
P
<---------
AHL20(2)
<---------
ANAC46
<---------
ANAC58
<---------
MYB52(1)
--------->
ATHB12
<---------
YAB1
<-----------
RAV1(1)
<---------
WOX13(1)
--------->
AHL20(2)
<---------
ANAC46
--------->
ATHB12
----------->
GT1
--------->
ARR14(2)
<---------
AHL20(2)
--------->
ICU4
<---------
ARR14(2)
<---------
ANAC46
<---------
YAB1
<---------
ANAC58
<-
cgactctcgtttctggtgggtttgtgttagagtgacttagagaatgggttttgttagcaatttgattgattcgataacttgtgaatattatatgcatcat
23637000
--------->
At4g35610
<---------
At4g35610
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
AGP1
------>
ZmHOX2a(2)
<---------
ARR11(3)
---
<---------
AGP1
--------->
ARR11(3)
--------->
YAB1
<--
--------->
ARR11(3)
<-----------
HVH21
--------->
ICU4
<-----
<---------
CCA1(2)
<------
ZmHOX2a(2)
<---------
YAB1
<--------
----------->
ARR10
<---------
ARR11(3)
<---------
ICU4
---------
============================
HOX2a_HOX2a
--------->
ICU4
--------->
YAB1
------>
ZmHOX2a(1)
<---------
AGP1
<---------
At4g35610
<---------
YAB1
------>
ZmHOX2a(1)
=============
HOX2a_HOX2a
--------->
ALFIN1
<---------
YAB1
--------->
TOE2(3)
===========================
HOX2a_HOX2a
<---------
TOE2(3)
<-------
TEIL
--------->
TOE1(3)
--------->
TOE2(3)
<---------
CCA1(2)
--------->
MYB59
--------->
CCA1(2)
<---------
GLK1(1)
--------
YAB1
--------->
CCA1(2)
<-----------
RAV1(1)
--------->
YAB1
--------->
GLK1(1)
ggtgattctccttagatctgagctcattagatctcaaatgtgtcgctgatttaggtcatgatgatgatatacatagcagtagagatttccttaataataa
23637100
---------->
DOF2
<
<-----------
RAV1(2)
----------->
HVH21
<-
------>
ARR11(3)
<---------
AHL20(2)
<---------
At4g35610
--
-------
ARR11(3)
----------->
GT1
--------->
At4g35610
<---------
WOX13(1)
------
GT1
<---------
AHL20(2)
--------->
ALFIN1
--------->
GLK1(2)
<---------
ANAC58
-
ICU4
--------->
AHL20(2)
--------->
ANAC46
<---------
HSFC1(2)
--------->
ATHB12
<-
>
YAB1
--------->
TOE2(3)
<-----------
GT1
--------->
HSFC1(2)
------->
TEIL
<---------
ANAC58
catctcttaacatttattttgttaaattttacag
gcgaggggtttgaagaagcatctgaagaggcttaatgcgcctaagcattggatgcttgacaaactt
23637200
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AGI:
At5g58420.1
Description:
40S ribosomal protein S4 (RPS4D). Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4e, N-terminal and RNA-binding (InterPro:IPR013844); contains InterPro domain Ribosomal protein S4e, N-terminal (InterPro:IPR013843); contains InterPro domain Ribosomal protein S4e, central (InterPro:IPR013845); contains InterPro domain KOW (InterPro:
Range:
from: 23636732
to: 23638320
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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