Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>MYB83                                                            ------>MYB46(1)                                                          <---------MYB59                                                        -------->P                                                       ------->GAMYB                                                      --------->MYB46(3)                                                      <---------MYB55(2)                                                      <---------MYB111(2)       --------->YAB1                                        ------>ZmHOX2a(1) ------->GAMYB    <---------DAG2         ---                                    <---------ALFIN1  <---------MYB111(1)  <----------DOF2      <---- >ARR11(3)                --------->TOE2(2)       ------>ZmHOX2a(2)  --------->GLK1(2) <---------AHL20(2) -ARR11(3) --------->YAB1--------->YAB1 =================HOX2a_HOX2a<---------GLK1(2)  --------->AHL20(2)   tagctagtctcaatcttcatgagacaaacataggtccccctcctctgtctgatctaacaacccaactccaaattctgctttatcagaaattatatgaaat  23494200                      ------->GAMYB                      --------->TOE2(3)                     --------->MYB46(3)                   ------->GAMYB                  <---------MYB111(2)                 <---------ICU4            --------->ZAT18                           --------->YAB1            <---------ZAT18                           --------->ATHB12                     --------->ANAC46         <---------ANAC58                            --------->ICU4                   <--------------         <---------ANAC58                            <---------YAB1         --------->ZAT2 --------->ANAC58        <-----------RAV1(1)                        <---------ICU4           --------->At4g35610     <----------DOF2-------->P                     --------->YAB1           <---------ZAT2 --------->ANAC58    <---------DAG2<---------MYB55(2)           <-------TEIL    <----------DOF2        <-------------- <-----------GT1  <---------MYB111(1)  <----------DOF2<--------HAHB4        <---------At4g35610 ------>WOX13(1)  --------->MYB46(3) <---------At4g35610 <---------ICU4  <---------At5g28300--------- -----ATHB12------>NtERF2            --------->At4g35610<---------YAB1  <-----------GT1   --------->SPL7   caattaccttttggtgcccaacaacctccattttccttcagcttcaaggctcatcatcattactactttcaaattcacagctcgattactagtacgacat  23494300                                                                                 <-----------RAV1(2)                                                                             <---------At4g35610                                                                             --------->At4g35610                                                    ---------->DOF2      <-----------RAV1(1)                                                --------->At4g35610      <---------MYB46(3)                                             --------->At4g35610         ====================RAV                                             <---------At4g35610        <---------MYB52(1)<---------MYB52(1)                                            ----------->RAV1(1)      <------NtERF2      <---------YAB1                                          --------->At4g35610      <---------ARR14(2)--------->GLK1(2) -AtSPL3                                  <---------At4g35610      --------->ARR14(2)--------->ARR14(2) -AtSPL8 ---------->DOF2                 ------->GAMYB            <------ZmHOX2a(1) <---------GLK1(2) -->RAV1(1)             ------->TEIL    --------->MYB46(3)        --------->ATERF1(1)<---------ARR14(2)   agacatagacataaagacagagaatggacccaagtagtatcaacagcagcagaagaaagagaattggaggagccgttgttgctgcaggttctgtttggga  23494400                                 --------->ANAC58                                 --------->ANAC58                                              <-----                            --------->YAB1                                                   --------                         ----------->GT1                                                  <----------DOF2                --------->YAB1   --------->ANAC46                               --------->ANAC58               --------->ICU4  <-----------GT1         --------->MYB52(1)       --------->ANAC58 <---   aacgagaatgcagagcgatgatgaagtttgtaataacgccattgttcttcatgttacaaacgaagacaagacttcttctactaagcaaatgactttaaag  23494500            <------MYB46(1)            <------MYB83            <---------ANAC46            <---------ANAC55(2)                      <---------TOE1(1)            --------->ANAC55(2)                      <---------TOE2(1)     <----------DOF2                                --------->SPL7  ------->TEIL              --------->CCA1(2)     <-----------HVH21 ----TOE2(3)<---------ANAC55(1)                   <---------SPL7 -->DOF2   --------->MYB111(1)                   <---------ANAC58                <------------CBF   - ---ZmHOX2a(1)         ---------->DOF2           <---------ANAC58    <---------ATHB12      ----------   gatgaaactttattaggtgttaatggaaagagacggacttggaagtctagagcgtccgatgtgaagaacccatcaacgcttgagattgttcgagccaatt  23494600                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                              -                                                    --------->ARR11(3)                              -                                                   <---------GLK1(1)                                <                                                 <------ZmHOX2a(1)                                 --                                              ------>NtERF2                                        <-                                             --------->DEAR3(1)                                    <-                                            <------NtERF2                                         <--                                        <---------TGA2(2)                                        <---                                       ----------->TGA1<-------GAMYB                            <----                                  ------>ZmHOX2a(1)--------->GLK1(1)                            <----                                  ==========================HOX2a_HOX2a                         -----                    <------ZmHOX2a(2)--------->At4g35610                     --------->YAB1     <----                    ====================================HOX2a_HOX2a          -------->HAHB4     <----                    ------------>CBF <---------At4g35610                    --------->ICU4      <----      ----------->HVH21           ===========================HOX2a_HOX2a    <---------ATHB12  <------      ----------->TGA1 <------------CBF----------->HVH21           --------->ICU4            <------- ---------->HVH21   =====================HOX2a_HOX2a<---------ARR11(3)      <---------YAB1 --------->ALFIN1 -->CBF            <---------ARR11(3)*TSS  ------>NtERF2<---------MYB52(1) <---------TOE2(3) --------   ctctgaaggtgacgaagccgagatcaattggtactcctccgatgacgccgaggagatcgttgtctagtagtgattctaatgataagagtccgagtgtgtc  23494700     <---------ANAC46    <------NtERF2  <---------DEAR3(1)  <---------ANAC46                                                                        <---------AtLEC2  --------->ALFIN1                                                                   <---------ARR14(2) --------->ATERF1(1)                                                                 --------->ARR14(2) -------->MYB55(2)                                                                 <---------TOE1(2) -------->ABI4(2)       --------->ARR14(2)                                      ------>ZmHOX2a(2) ---------MYB46(3)      <---------ARR14(2)                                     <------ZmHOX2a(2) ------->ALFIN1         --------->GLK1(2)                                     --------->ARR14(2) --------DEAR3(1)       ------->TEIL                                          <---------ARR14(2) --------AtMYB61    ------>ZmHOX2a(2)                                      ------>ZmHOX2a(2) -----GAMYB        --------->CCA1(2)                                      --------->CCA1(2) ------DEAR3(2)    <------ZmHOX2a(2)                                      --------->ARR14(1) -----DEAR4(1)    <---------ARR14(2)                                      <------ZmHOX2a(2)         - -----ANAC46      <---------AGP1                                         <---------ARR14(2)         - ---->ETT(1)      --------->ARR14(3)                                     --------->ARR14(2)         < -----At1g77200   --------->ARR14(2)                                     --------->ARR11(1)        <- -----DEAR3(1)    --------->ARR11(3)                                     --------->ARR11(3)        -- -----DREB2C(2)   --------->AGP1<---------ANAC46                         <---------ARR11(3)       <-- -----HVH21       <---------ARR11(3)                                    <---------HSFB2a(1) --------- ----RAV1(1)      <---------ARR14(3)                     --------->LBD16<---------GLK1(1)--------->ZAT18 ->ALFIN1       ----------->ARR10                      <---------LBD16 ----------->ARR10 <---------ZAT14   ggtggtggcgaagaaggcaagatctgaatctgtagaggggattgagaagaagactactccgggtcgagttaagaagatccgatcggaggtctgcacgacg  23494800          --------->At5g28300         --------->LBD16         ----------->GT1            ---------->DOF2   <---------DOF5.7(2)             <------ZmHOX2a(1)   ---------->DOF2               <---------TOE2(3) --------->DOF5.7(2)         <-------GAMYB -------->TOE1(3)           <---------ANAC58 -------->TOE2(3)           <---------ANAC46 -------GAMYB            <---------MYB52(1) --------MYB46(3)       <---------At4g35610                           --------->GLK1(1) ---->ZmHOX2a(2)        --------->At4g35610<---------ARR14(2)         <---------GLK1(1) ----ZmHOX2a(2)         <-------GAMYB ----------->GT1         --------->GLK1(2)--------->ANAC58 >ANAC46<---------DEAR3(1)  <---------ANAC58                 <---------GLK1(2) --------->ANAC58   atcgttaaagccggtgaatttgattcagttgcgttgaggaaagtgaattcgttgccatctccaaattctgagaaatctgatacgaaaacagagcaagaag  23494900                         --------->LBD16                        <---------HSFB2a(2)             <------ZmHOX2a(1)                        --------->HSFB2a(2)            <---------At4g35610                     <------ZmHOX2a(2)                >>>>>>>GRF7  ------->TEIL                    <---------ARR11(3)      <---------ANAC46       <---------ARR11(1)                    --------->ARR14(2)      <---------ANAC58       --------->ARR14(2)                    <---------ARR14(2)      <------MYB83===============HOX2a_HOX2a            --------->ARR14(2)    <<<<<<<<<WRKY18  <-----------HVH21   --------->At4g35610      <----            <---------ARR14(2)   --------->WRKY18(1) <-----------RAV1(2)                       <-----        --------->YAB1------>ZmHOX2a(2)     <---------ANAC58       <---------ARR14(2)          ------    -------->ATHB1 <---------HSFB2a(1)      <------MYB46(1)       <---------CCA1(2)        <---------At4g35610    --------->ATHB12--------->ARR11(3)     --------->MYB46(2)     <---------ARR14(1)       --------->At4g35610    --------->YAB1 --------->HSFC1(2)      <---------AtMYB61<---------YAB1        --------->ANAC58   <---------YAB1  --------->HSFB2a(1)     --------->MYB111(2)  ------>ZmHOX2a(2) --------->ANAC58   tgactatcattgagaattcgaagatcccagaagaagtcaaggagtttggtgtttgtcaggagatgatcgtatctgctaaatcaaacgaaaatgagcagat  23495000                                                              ---------->DOF2          <-----------RAV1(2)                                <------ZmHOX2a(1)       ------>NtERF2             --------->ICU4           <------ZmHOX2a(1)      <---------ETT(2)        --------->ICU4            --------->ALFIN1                          --- -----WOX13(1)     <------MYB46(1)  <---------YAB1     <------ZmHOX2a(1)                         <--- ----ARR14(2)      <------MYB83  <---------YAB1   ------------------------>ANAC81   --------->ALFIN1 --->ARR14(2)<------ZmHOX2a(1)<---------YAB1     <---------At4g35610   --------->ALFIN1     ---------   tgacaatggcgaccaggagattggtgatcaagatgattatgaagaagatggagatgaggaggaggaaagagaagtggagaagaagagtgttgatgtgaag  23495100  Previous    Next  AGI:  At5g58000.1    Description:  CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4). similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT4G28430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45451.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 23494637    to: 23496824    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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