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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                     <-------TEIL
                                 ------>ZmHOX2a(2)                  --------->CCA1(2)       --------
                                 --------->ANAC58                  <---------ARR14(2)    ------>ZmHOX2a(2)
                           --------->YAB1                          --------->ARR14(2)   --------->CCA1(2)
            --------->STY1(2)<---------YAB1                  --------->ZAT6             <------ZmHOX2a(2)
    --------->YAB1         <---------ICU4                 --------->YAB1               <---------ARR11(3)
------->GLK1(2)           --------->ICU4                --------->ANAC58               --------->ARR11(3)
------>ARR14(2)           <---------ATHB51    --------->ANAC55(2)  --------->ARR11(1)  <---------ARR14(2)
-------GLK1(2)  <---------At4g35610           <---------ANAC55(2)  <---------GLK1(2)   --------->AGP1
-------ARR14(2) --------->At4g35610 ----------->RAV1(1) --------->ANAC58               <---------AGP1
-------ARR11(3)--------->MYB59   --------->ANAC58       --------->ANAC46               --------->ARR14(2)
 
gattctatcacaactagttagctaaacaaattatgatcgcaacaaaattaagtgatcacaagcatcactagattcgagctaaatctataagatctagcta  23224800
                                                                               <------ZmHOX2a(1)
                                                                              <------MYB83
                                                                              <------MYB46(1)
                                                                            <--------P
                                                                         <---------AtMYB61
                                                                        <------NtERF2
                             --------->LBD16                          <---------ANAC46
                         <---------ARR14(2)                           <---------DEAR3(1)
                         --------->ARR14(2)                          <------NtERF2 --------->CCA1(2)
                     --------->YAB1                                  <---------LBD16
                     <-----------GT1                                 --------->ATERF1(1)
                <---------DAG2           --------->CCA1(2)          <---------RAP2.3(1)
                <----------DOF2     ---------->DOF2                 <---------ORA47(2)
          --------->ANAC58  <---------HSFB2a(2)                    <---------DEAR3(1)
          --------->ANAC46  --------->HSFB2a(2)                    <---------RAP2.3(3)
->STY1(2) --------->ANAC58<------ZmHOX2a(2)                        <---------RAP2.3(2)       -------
 
tctacgagtaaacacacaactttatcacgatccagaaatgaaagagatgagactgagagataccacgaagacggcggaggtaggagagacaagagagaaa  23224900
                     <---------DEAR3(1)
                   ------->TEIL
                   --------->ARR14(2)
              --------->At4g35610
              <---------At4g35610
            <-----------RAV1(2)
           <------NtERF2
          <-----------HVH21
          ----------->RAV1(1)
          ------>NtERF2
         --------->ATERF1(2)                                                                      <-
         --------->DEAR3(1)                                                                     <---
         --------->RAP2.6(2)                                                                    <---
         <---------ATERF1(2)                                                             --------->GLK1(1)
         --------->RRTF1(2)                                               --------->At4g35610   <---
         --------->ANAC46                                                --------->GLK1(2)------>ZmHOX2a(2)
         --------->RAP2.3(3)                                      --------->ALFIN1       <---------GLK1(1)
         --------->RAP2.3(2)                                    <------MYB46(1)          <------ZmHOX2a(2)
         --------->RRTF1(3)     <---------At4g35610             <------MYB83            --------->ARR14(2)
        --------->ORA47(2)      --------->At4g35610            <---------TOE2(2)        <---------ARR14(2)
        --------->RRTF1(1)      --------->ZAT14             ------>ZmHOX2a(2)           <-----------ARR10
        --------->ERF1  <---------DEAR3(1)                --------->ARR11(3)            --------->ARR14(3)
       <---------ATERF1(1)<------NtERF2                   <---------ARR11(3)            <---------ARR14(3)
      --------->ANAC58  <---------ANAC46      <---------ANAC58 <---------TOE1(2)        <---------ARR11(3)
      --------->ANAC46 <---------LBD16        <---------ANAC58 <---------AtMYB61        --------->ARR11(3)
      --------->ANAC58 --------->At4g35610   --------->ZAT2<------ZmHOX2a(2)            <---------AGP1
--->DOF2--------->RAP2.3(1)     <---------ZAT14          <---------GLK1(1)<---------At4g35610 ------
 
gaagactgaacgccgccagatgaatcggcggagagagcagtctgaacaagcttgcgctggagatcgtaggtggaagaagctgaagcttcaagatctcctt  23225000
                                                                                       <---------GLK1(1)
                                                                                       --------->GLK1(1)
                                                                                      <---------ARR11(3)
                                                                                 <------NtERF2
                                                                                <---------RAP2.3(1)
                                                                                <---------ERF1
                                                                                <---------DEAR4(2)
                                                                                <---------ATERF1(1)
        <---------ANAC58                                                        ------>NtERF2
        <---------ANAC58     <----------DOF2                                   <---------RAP2.3(3)
    <----------DOF2         <---------ANAC58                                   --------->DEAR3(1)
   <---------ANAC58         <---------ANAC58                                   <---------ANAC46
   <---------ANAC58    <---------DAG2                                          <---------RRTF1(3)
----------RAV1(1)    --------->LBD16                                           <---------RAP2.3(2)
------ANAC46         ------>NtERF2    --------->ANAC58                         <---------DEAR3(1)
------ANAC58        --------->ANAC46  --------->ANAC58                        <---------ABI4(1)
------ANAC58       <---------LBD16    --------->ANAC46            <----------DOF2--------->ATERF1(1)
>ZmHOX2a(1) <-------TEIL<----------DOF2                 <---------CCA1(2) --------->MYB52(1)    ----
 
cgtgttgctttgcggtccattctccgcctttgcttttgcacacgaatgagaaaactcccatctcttcttctttcttcaaacggcggcgagatttctcaac  23225100
                                         --------->AHL20(2)                              --------->LBD16
                             <---------ANAC55(2)            --------->ANAC46            <---------LBD16
                             ----------->GT1          <XXXXXXXXXXXXXXXXXXXXMIR859      <---------LBD16
                             <---------ANAC58      *TSS   <-----------GT1       --------->YAB1
         ---------->DOF2     --------->ANAC55(2)--------->ATHB12           --------->TOE2(3)    ----
------->GT1                  <---------ANAC58  <---------YAB1              --------->TOE1(3)    <---
 
tgtgaaaaaaactaaagtctcatggcaaaaatgcgtaattttgtttatatatgatttgatttcacgacgcagtgagaaccctaaaataagtccgggctta  23225200
                                                                                      --------->ANAC46
                                                                                    <---------ALFIN1
                                                                                  ----------->RAV1(1)
                                                                               --------->ANAC46
                                             --------->AHL20(2)                --------->ANAC58
           <<<<<<<GRF7                       <---------AHL20(2)                --------->ANAC58
         ----------->HVH21             ----------->GT1--------->YAB1         <---------ANAC58
----->HSFB2a(2)          --------->AHL20(2) --------->ICU4                   <---------AtLEC2
------HSFB2a(2)---------->DOF2 <------------CBF      <---------------AGL15   <---------ANAC58      <
 
tagaagatgggcctgacacaaagcccattttaaaaattggaagcgtaattaatagactcatagtagtaactcaaaaatatgcatgccacacttcatttct  23225300
                                       --------->YAB1
                 <---------DOF5.7(2)   <--------HAHB4
               --------->DOF5.7(2)     <---------ICU4                       <---------YAB1        <-
              --------->TOE2(3)       <---------YAB1               <---------ANAC58               --
       <---------ZAT6                <-----------GT1               <---------ANAC58          <------
---------At4g35610              <---------ANAC46        ------->TEIL <---------MYB52(1)   <---------ATHB51
 
acagctattagtcttatcgttatcgacaaaaacttgtgtttatcattactcgtgctatgtattttagtttgcgttatttatgcttaaaatcaaattatgc  23225400
                                                                                                 ---
                                                                                                 <--
                                                                                                 <--
                                                                                               -----
                                                                                              ------
                                                                                             <------
                                                                                          --------->MYB46(3)
                                                                --------->HSFB2a(1)  ----------->GT1
                                                                <---------HSFB2a(1)  --------->YAB1
                                                               <---------TOE2(3) <---------AHL20(2)
               <--------ZAP1        <---------ALFIN1           <---------TOE1(2)--------->AHL20(2)--
 <-----------GT1                  ----------->RAV1(1)          <---------TOE2(2)<---------ATHB12 <--
--------ARR14(2)               --------->ANAC58             --------->ANAC46  <---------------AGL15
------->ARR14(2)               --------->ANAC46          --------->ARR14(2)   --------------->AGL15
---YAB1    <---------LBD16     --------->ANAC58          <---------ARR14(2)  <-----------------AGL3-
 
atattttctgtttttctgggtcaaaaaatcaaacatgccacacttgtttaacttaagaagtatacgaaggtttctgtttctcaataaatggtaacaacta  23225500
 ------->GAMYB           ------>ZmHOX2a(2)
--------->MYB46(3)      <------ZmHOX2a(2)
------>MYB46(3)        --------->AGP1
-------MYB55(2)        --------->ARR14(3)
-------MYB111(2)       <---------ARR14(3)
---->MYB52(1)          <---------ARR11(3)
->GAMYB                --------->ARR11(3)
---MYB52(2)            <---------ARR14(2)                                <----------DOF2
----->GAMYB            <---------GLK1(2)                    <---------AHL20(2) <---------YAB1
-------MYB111(1)       --------->ARR14(2)           --------->ANAC58  --------->ANAC58
------->P             <---------CCA1(2)             --------->ANAC58  --------->ANAC58
 
acaaccatcgaagagtacgagtttcagatcttctagttctctctgcatttacatcaagaaaatttacttaaacaagcttttcatgagaggtatatgtctt  23225600
                    <---------ZAT18
                    --------->ZAT18                                                             <---
               ---------->DOF2 <----------DOF2                                      ------>ZmHOX2a(1)
          <---------AHL20(2)  <---------ANAC58                                      <----------DOF2
      --------->AHL20(2)      <---------ANAC58                           ---------->DOF2--------->HSFB2a(2)
      --------->ATHB51--------->RAP2.3(3) <---------ARR11(3)       ------->TEIL --------->ARR14(2)
      <---------AHL20(2)   <---------CCA1(2)                   ------->TEIL     <---------ARR14(2)
 
acatttgaattatttacataaagagccctcatagcttttctccatgatatatgatgaaatgaaacgtatgtacttggaaagcaggtcctttctagtattg  23225700
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AGI:  At5g57290.1   
Description:  60S acidic ribosomal protein P3 (RPP3B). Identical to 60S acidic ribosomal protein P3-2 (RPP3B) [Arabidopsis Thaliana] (GB:Q9LVC9); similar to 60S acidic ribosomal protein P3 (RPP3A) [Arabidopsis thaliana] (TAIR:AT4G25890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65458.1); similar to acidic ribosomal protein P3 [Corchorus olitorius] (GB:ABS72187.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813)
Range:  from: 23224028    to: 23225152    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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