Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------PCF2           ------->TEIL           <------------CBF        <---------ANAC55(2)     --------->ARR11(3)        <---------ANAC55(1)     <---------AHL20(1)        --------->ANAC55(1)     <---------AHL20(2)        --------->ANAC55(2)     --------->AHL20(2)                      <------------CBF       <-------TEIL   --------->ARR14(2)        --------->PCF2        <---------YAB1   <---------YAB1     <---------ARR14(2) <----------DOF2            <-----------GT1         <-------- -------->ICU4<---------AHL20(2)--------->AHL20(1)              --------->AHL20(2)          --------- -----HSFB2a(2)     --------->ANAC46     <---------DAG2         <---------AHL20(2)    --------->At4g35610 ---->HSFB2a(2) <-----------GT1 <---------ARR11(3)         <---------MYB111(1) <----------DOF2     <-   agatgatgatacgtatttaaacccgataccgaaatatattgggctttatgggcccatactaactacttaattactattgggctttattagctcgaatatg  22953400                        ----------->RAV1(1)            --------->AHL20(2)             <----------DOF2   ----------->GT1   --------->ANAC58                  <---------AHL20(2)             <-------------- --------->At4g35610 --------->ANAC58                  <---------ATHB51               --------->TOE2(3) -ARR14(2)           --------->ANAC46                 <---------AHL20(1)              --------------- >ARR14(2)    ------->TEIL                            --------->AHL20(2)        --------->ZAT6 --------GLK1(1)   ---------->DOF2           <------ZmHOX2a(1)                <-----------GT1   gacatctgtaaaactggacctataagcaacacaagtttgacaatataggaatacaaaataattcgaattcagagaaaaattatctctactttaataggtc  22953500                           <---------RVE1(1)                           <---------CCA1(1)                          <---------AHL20(1)                          --------->ARR11(3)          <-----------GT1                  <---------MYB46(3)                          <---------ARR11(3)      --------->AHL20(2)             --------->MYB52(1) <---------TOE2(3)   --------->TOE1(2)            <---------AHL20(2)     <----------DOF2 -AGL15       --------->TOE2(3)                  --------->YAB1     --------->YAB1 --------->ZAT6 >AGL15     --------->GLK1(2)              <-----------GT1      --------->ZAT6   --------->YAB1 -----   tataacgtttgcataatctaaaacccaagatattttggaaacatatttctattttaataccattttccactaatacttttcaataacagtagttgtttcc  22953600                                                                  --------->ANAC55(2)                                                                  --------->ANAC58                                                                  --------->ANAC58                                                         <--------HAHB4                                                --------->ATHB12--------->CCA1(2)                                                <---------ICU4  --------->ARR14(1)                                               <---------AHL20(2) <---------ANAC55(2)                                            <---------ICU4     --------->ARR14(2)                                            --------->ATHB51   --------->ARR11(1)                                            <--------HAHB4     <---------ARR14(2)                                --------->AHL20(2)      <---------YAB1                                --------->ICU4 --------->AHL20(2)<-------TEIL                            --------->AHL20(2)<---------YAB1 --------->MYB59      <-----------TGA1 --------->AHL20(2)   -------->ATHB1   ----------->ARR10   <-----------GT1--------->AHL20(2)  <---------TOE2(3) --------->ICU4               --------->DEAR3(1)   --------->MYB52(1)  <---------AHL20(2)  --------->ICU4<---------ICU4--------->YAB1--------->DREB2C(2) ---->TOE2(3)    <---------WOX13(1)  <-----------GT1    <---------ATHB51  ---------->DOF2   ataaataacgtctccactaattgaataaaatgaaatatttaacgaattattaattgcgataattagatacgaatcaaaaagattccaccggcttcgttgg  22953700                                                   <---------YAB1                                                  --------->KAN4(2)                                                <---------MYB52(1)                                           --------->MYB52(1)                                        <------ZmHOX2a(2)            <-----------GT1             --------->CCA1(2)                     --------->ARR14(2)        <---------RVE1(1)              --------->ARR11(3)            --------->ANAC58        <---------CCA1(1)              <---------ARR14(2)            *TSS------>NtERF2       --------->ARR11(3)              <---------ARR11(3)            --------->ANAC46       <---------AHL20(1)      --------->DAG2  --------->At5g28300   --------->ANAC58       <---------ARR11(3)     ---------->DOF2 ----------->GT1  ------------>CBF     <---------TOE2(3)--------->ANAC46 --------->ARR14(2)--------->REM1(1)    <---------ARR14(2) <----------DOF2    <-----------GT1  ----------->ARR10 <-----------GT1  --------->RAP2.3(3)   aaactttaagatatttccgattttaccccatataaagggaagatccaacggttattcttacatctctcaatacgcagccaaatacactctctctgaaacc  22953800                                                                                             ------>NtERF2                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                                                                                           --------->RAP2.3(1)                                                                                          ------>NtERF2                                                                                          <---------ATERF1(1)                                                                                          <---------RAP2.3(1)                                                                                          --------->LBD16                                                                                         --------->DEAR3(1)                                                                                         <---------DEAR3(1)                                                                                         --------->ATERF1(2)                                                                                         <---------ATERF1(2)                                                                                         --------->RAP2.3(2)                                                                                        <---------LBD16                                                                                        --------->ORA47(2)                                                                                        <------NtERF2                                                                                        --------->ATERF1(1)                                                                                        --------->RAP2.3(1)                                                                                        --------->DEAR4(2)                                                                                        --------->RAP2.6(1)                                                                                        --------->ERF1                                                                                       <---------ATERF1(1)                                                                                       <---------RAP2.3(1)                                                                                      <---------ATERF1(2)                                                                                      --------->ATERF1(2)                                                                                      --------->RAP2.3(3)                                                                                      --------->RAP2.3(2)                                                                                      --------->DEAR3(1)                                      <---------ANAC58                   <---------At4g35610 <-------                                      <---------ANAC46         <<<<<<<<<<<<<<<<<LFY  --------->ATERF1(1)                       --------->ANAC46                       ------->GAMYB          --------->ORA47(2)          ----------->GT1             --------->ANAC55(2)    <---------MYB52(2)      --------->RAP2.3(1)         <---------TOE2(3)            <---------ANAC58     <---------DOF5.7(2)       <---------RAP2.6(2)         <---------TOE1(3) ------>NtERF2            <---------ANAC46   <---------ANAC46------>NtERF2    <----------DOF2    --------->ANAC58    <----------DOF2 --------->MYB52(1)        --------->DEAR3(2)  ------>ZmHOX2a(1)    --------->ANAC58--------->LBD16 <---------TOE2(2) --------->At4g35610---------   tctcctcttttagggtttaatatcaacgcctccaaaatttccgtgcttttgttttcgtagataacgaacaatggctgatgagattgtgccgccggcgact  22953900                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                  <--                                                                                                  ---               ------>ZmHOX2a(1)                                                                 <---               =======================HOX2a_HOX2a                                                ----              --------->TOE2(3)                                                                  <---           <---------ARR11(1)                                                                   <----           <---------ARR14(2)                                                                   <----           --------->ARR14(2)                                                                   <----          <---------ARR14(1)                                                                    -----         <---------SPL7                                                                        <-----       <------NtERF2                                                                           <-----       --------->RAP2.3(1)                                                                     <-----      ------>NtERF2                     ---------->DOF2                                        ------     --------->RAP2.3(2)          --------->ANAC46                                             <-----     --------->RAP2.6(2)         xxxxxxxxxxxxxxxxx>smallRNA(le3)                               <-----     --------->DEAR3(1)       <---------GLK1(1)                                               -------     --------->ANAC46        <---------ARR14(2)                                               -------    --------->ATERF1(1)      <---------AGP1                                                  --------    --------->ERF1           --------->ARR14(2)                                             ---------    --------->MYB46(3)       --------->ARR11(3)              --------->LBD16              -----------   --------->At4g35610       <---------ARR11(3)            <---------LBD16             ------>ZmHOX2a(2) --ATERF1(1)  --------->TOE1(3)------>ZmHOX2a(2)        ----------->HVH21  <---------TOE1(2)--------- >DEAR3(1)<---------CCA1(2)  ------->TEIL    --------->At4g35610   <---------YAB1    --------->ARR14(2)   caattagccgccgtatccttagaaaacgatggatctacggtgcaaagagctcaattctctaaccgggttttgattcgaacgattttggatcgacctgacg  22954000  <---------ZAT2  --------->ZAT2  --------->At4g35610  <---------At4g35610 <---------ARR14(2) --------->ARR14(2) -------->ATERF1(1) ------NtERF2                                 --------->ARR14(2) ------->LBD16                                <---------ARR14(2) -------DEAR3(1)                            ----------->ARR10 ------>ALFIN1                          <---------ANAC46 ---NtERF2                              ----------->GT1 ----->ATERF1(1)                        <------MYB46(1) ------LBD16                            <------MYB83 -----RRTF1(1)                         <------MYB46(1) -----ERF1                             <------MYB83                                                 < -----RAP2.3(1)                        ----------->GT1                                              - ->NtERF2                              --------->MYB59                                              - ----ATERF1(2)                         <---------MYB46(3)                                    <------- ----TGA1a                         --------->MYB52(2)                                        <------- ----RAP2.3(2)                     --------->MYB55(2)                                       <-------- --->ATERF1(2)                     --------->MYB111(2)                                      --------- ----DEAR3(1)                     <---------AtMYB61                                       --------->DOF5.7(2) ----RAP2.3(3)               --------->ARR14(2)                                          --------->At5g28300 -->SPL7                     <---------ARR14(2)  <---------HSFB2a(2)                     <-------GAMYB -->RAP2.6(3)      --------->MYB52(1)<--------P <---------LBD16                         <---------MYB46(3) ->MYB52(1)      <---------WRKY38(1)<-------GAMYB--------->HSFB2a(2)                   <---------ANAC46 -->TGA1         <---------WRKY12 --------->ALFIN1--------->LBD16 ---------->DOF2  <---------ANAC58 - >RAV1(2)       --------->WRKY18(1)<---------MYB46(3)     <------ZmHOX2a(2)        <---------ANAC58 < -->HVH21      <-----------HVH21 <---------MYB52(1)      --------->ARR11(3)    <----------DOF2      <   gcggagctggactcgccggtcaaacggttcgaatcggtggttgggtaaaatccggaagagatcaagggaaaagaacgttttctttccttgcggttaacga  22954100              <---------ARR11(1)              <-----------ARR10  ------>ZmHOX2a(2)               ------>ZmHOX2a(2) ---------ARR14(2)        <---------YAB1                             <---------HSFB2a(2) -------->ARR14(2)    ----------------------->TaNAC69(2)             --------->HSFB2a(2) ------>TEIL  --------->GLK1(2)  <------ZmHOX2a(2)                   --------->LBD16 --TOE2(3)    <---------ARR14(2)--------->TCP20                     <---------ANAC46 --TOE1(3)    ------->TEIL<---------AtMYB61                        <---------LBD16 -DOF5.7(2)  <---------CCA1(2)<---------MYB46(3)              <--------P             <-------GAMYB >MYB52(1)   <---------ARR14(1) <---------ARR14(2)           <-------GAMYB          <---------MYB46(3) -------->ARR11(3)  <---------TOE1(3)<---------CCA1(2)       <---------ANAC58   ----------->HVH21 ---------AGP1--------->ARR14(2)--------->ARR14(2)           <---------ANAC58 <---------ANAC58 ---------ARR11(3) <-----------RAV1(2)        --------->YAB1<---------MYB46(3)<---------ANAC58   tggatcttgtccagcgaatcttcaggttatggtggatccgtctctctatgatgtctctaacttggttgctacgggaacttgtgtgactgttgatggagtt  22954200                                --------->At4g35610                                <---------At4g35610                               ----------->RAV1(1)                             --------->ZAT2                             <---------ZAT2              --------->DAG2 <---------At4g35610            ---------->DOF2  --------->At4g35610         --------->ANAC46   ----------->RAV1(1)    <---------ARR14(2)   --------->ANAC58                                                  <---------ARR14(2)    --------->ARR14(2)   --------->ANAC58                                         <---------ANAC58  --------->HSFC1(2)     --------->ANAC46     <---------TOE2(3)                   <---------ANAC58  <---------HSFC1(2)<---------TOE2(3)         <---------TOE1(3)              <---------MYB46(3)  --------->HSFB2a(1)   <-------TEIL         --------->MYB52(1)  <-----------RAV1(1)       --------->ARR14(2)  <---------HSFB2a(1)  --------->CCA1(2) --------->At4g35610    <---------TOE2(3) <---------ANAC46 <---------TOE2(3)  <---------------AtSPL8 <----------DOF2 --------->ATHB12 --------->ALFIN1 <---------TOE1(3)---------->DOF2        <---------At4g35610 <---------WOX13(1)  <-------TEIL   ttgaaggttccaccgaaaggtaaaggtacgcagcagcagattgagcttaacgttgtgaaggtgattgatgttggaacggtggatgcgtctaagtatccac  22954300  Previous    Next  AGI:  At5g56680.1    Description:  SYNC1 (EMBRYO DEFECTIVE 2755); ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding. Identical to Asparaginyl-tRNA synthetase, cytoplasmic 1 (SYNC1) [Arabidopsis Thaliana] (GB:Q9SW96); similar to SYNC3, ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G70980.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72488.1); similar to hypothetical protein OsI_001933 [Oryza sativa (indica cultivar-group)] (GB:EAY74086.1); similar to hypothetic Range:  from: 22953769    to: 22956262    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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