Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------------->AGL15    <---------------AGL15   <-----------------AGL3   <-----------------AGL2                                  <---------TOE1(3)   ===================================================================MADS_MADS --------->ARR11(3)                                 -------->P <---------ARR11(3)         ------->GAMYB           <-----------------AGL1 -------->RVE1(1)         <---------At4g35610       <-----------------AG -------->CCA1(1)         --------->At4g35610      --------->MYB52(1) ------YAB1     <---------ATHB12                   <-----------GT1 --->YAB1     <---------GLK1(1)                  <---------MYB52(2)      <----------DOF2       ------ ---YAB1      --------->GLK1(1)          --------->ZAT6    <---------TOE2(3)                   ------ -->ICU4---------->DOF2 <--------P    <---------CCA1(2)    --------->MYB59              <---------YAB1   taatatctgtaaaaggaaatcatctggtaactgactaagcctatctctataactaaccatttaggttacacaattctttcacaaatggttctgattcctg  22869600                                  ------>ZmHOX2a(2)                                  =============HOX2a_HOX2a                                <---------AGP1                    --------->ANAC58                --------->YAB1  <---------ARR14(2)                --------->TOE1(3)<---------At4g35610       --------->YAB1           --------->ARR11(3)   <---------AHL20(2)     --------->ATHB12  <---------AHL20(2)--------->ANAC58        >>>>>>>>>TBF1                       --------->ARR14(2)  --------->AHL20(2)--------->ANAC46    <------ZmHOX2a(1)            ----------->HVH21 --->AtLEC2     --------->TOE2(3)--------->At4g35610               --------->O2 <---------ARR14(2) >ZmHOX2a(1) <-----------GT1    --------->ARR14(2)  ----------->RAV1(1)      <---------ANAC46       -   caaaataaatgaaaataaccataagcaaacattggatctgcaggaagaagaaacccacaaaaattagccatgtgatacagcgtatacaagttcaagaaca  22869700                                                           <----------DOF2                                                           <---------DAG2                                                      <---------MYB52(1)                                                    <---------ANAC58                --------->STY1(2)                                                    <---------ANAC58                <---------STY1(2)                                                    <---------ANAC46               ------>MYB83                                                 --------->ARR14(2)                ------>MYB46(1)                                           --------->GLK1(2)                     <---------MYB59                                      ---------->DOF2<---------SPL7           <-----------GT1 --------->DOF2                    --------->YAB1<---------ARR14(2)     <---------ATHB12       <-----   gagaaaggaacgattttagaacagattagacttagaatcacaaagaaactggttccgttcgcttttgggttttaatcaatttacctagctagacgttaag  22869800                                                                                <---------YAB1                                                                               --------->AHL20(2)                                                                          <---------YAB1                                      --------->ATHB12                  --------->MYB52(1)       <---           ----------->GT1          <---------WOX13(1)                 --------->TOE1(2)         <--- ----TOE2(3)            <---------ANAC46<---------WOX13(1)             --------->TOE2(2)    <--------   aattcatagaataggggaaatttttggcgaataaaaagattgattgaaaaacccatgaagaaattagaagaaacttacgatttttatagccaaattgttg  22869900      --------->ANAC58      --------->ANAC58   ----------->TGA1   ----------->HVH21                                                                   --------->ALFIN1  --------->LBD16                                                           <---------MYB52(1) <---------ANAC58                                                           <---------ARR14(2) <---------ANAC55(1)                                                        --------->ARR14(2)   <--- <---------ANAC55(2)                                                     --------->MYB59       ------ --------->ANAC55(2)         <---------ARR11(3)                        ------------>MYB.PH3(1) <----- <---------ANAC58           <---------CCA1(2)                         --------->ARR14(2)      ------- <---------ANAC46         <----------DOF2                             <---------ARR14(2)   <---------AHL20(2) ------ANAC58    <------MYB83--------->ARR11(3)                   *TSS--------->GLK1(2)----------->GT1 ------ANAC58    <------MYB46(1)                               ---------->DOF2      <---------AtMYB61 ---RAV1(1)     <---------TOE1(2)                           ----------->GT1<-------GAMYB   --------->AHL20(2)   cttccgtgacgaaatttgtaggttttcgctatatctctctctctgtgaagttgtgagcgaagaagtaaagagaattcggttatgcagaggtgtttaatta  22870000                                                       --------->ANAC58                                                   --------->ANAC58  <------MYB46(1)                                  --------->ANAC58  <------MYB83                              <---------YAB1 ------YAB1                                <---------ARR11(3) --->YAB1                                  --------->AHL20(1) ----ICU4               <---------DEAR3(2) <---------AHL20(1)   >>>>>>>>>>MYB80      ---------->DOF2 -->ICU4          ---------->DOF2     ------------>CBF --------->ANAC58       ----------->RAV1(1)   tgtttggtttcggttcaactaaaagccggtttgattttggaacaatatttttgaagcaagaaatcaaaccaaaatttatccaacaaaaaaagagagagag  22870100                                                            <---------YAB1--------->YAB1                                                          --------->YAB1  --------->AHL20(2)                                                         --------->AHL20(2)<---------AHL20(2)                                                         <---------AHL20(2)--------->AHL20(2)                                                  <---------AHL20(2)      <---------AHL20(2)                                              <------ZmHOX2a(1)     ----------->GT1               <---------ARR11(3)           <---------TOE2(3)    >>>>>>>>>EIN3               <---------GLK1(2) <---------MYB46(3)  <---------ATHB12 <---------YAB1            <----   agagagcaagattactagattttaaaaatgtagagttgttagaatttaggaataaatcatttattatacattgtaattaaaattttggtatttttggttt  22870200                                                                         --------->YAB1                                                                     --------->AHL20(2)         <----                                                                     <---------AHL20(2)        ------  <------MYB83    --------->WOX13(1)                            <---------MYB52(1)             ------  <------MYB46(1)--------->AHL20(2)                         <---------At5g28300             <-------- --------->MYB59 <---------AHL20(2)            <---------WOX13(1)   --------->AHL20(2)     <--------- -----AHL20(2)--------->YAB1          <---------YAB1        <-----------GT1      --------->ANAC46   aatttggttattgaaataataaatcagtttgatttttgttatgaaatagattgattcacatttacccttatttaataacaaaaacaccactatttaccct  22870300                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                      <---------AHL20(1)                                                                                  --------->AHL20(2) <------ZmHOX2a(2)                                           <---------AHL20(2)   <---------YAB1 -----MYB52(1)                                              <---------AHL20(2)    <---------AHL20(2) --->TOE2(3)                                                <---------AHL20(1)   --------->AHL20(2) --->TOE1(3)                                        <---------WOX13(1)    --------->MYB52(1) -At5g28300            <----------DOF2       --------->YAB1 --------->AHL20(1)   --------->AHL20(1) - --GT1     ----------->GT1                  <---------YAB1  --------->AHL20(2)   <---------AHL20(1)--   tagatcacatccaatgtaaaaaaaactttaagagagaagagaagttatcataagattggcaatttaatatgagaagaaacgaatataatttttttatcaa  22870400                                                ----------->GT1                                          <--------ATHB1                                          <---------ICU4                     <-----------ARR10    <---------AHL20(2)                     --------->ARR11(3)   --------->ATHB51           <---------YAB1                 --------->AHL20(2)             --------->MYB52(1) -------->At5g28300  <---------ARR14(2)  <---------ATHB12          <----------ID1                   - --------->GT1      <---------CCA1(2)    <---------ATHB51      <----------DOF2             ----------   acagtaactacttatgctactcaaatcttggctctcaatgtcaataatttgggtaaaactataagctttgagacaaaacagaagaaacaagactggaaac  22870500  Previous    Next  AGI:  At5g56420.1    Description:  F-box family protein. Identical to F-box/FBD/LRR-repeat protein At5g56420 [Arabidopsis Thaliana] (GB:Q9FM89;GB:Q93ZF9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G32375.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 22867810    to: 22869966    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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