Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->HSFB2a(2)                    --------->LBD16--------->LBD16        --------->At4g35610       <---------HSFB2a(2)     ------>ZmHOX2a(1)         ------>MYB46(1)    --------->TOE2(3)          ------>MYB83 ---------GLK1(2) <---------HSFB2a(2)                                                    ---------->DOF2 ------->At4g35610--------->HSFB2a(2)        <---------GLK1(1)                      ----------->GT1 - ---GLK1(1) <---------ALFIN1 --------->AtMYB61         <---------ALFIN1       --------->AHL20(2)    <   cagattcctcagcatcacttcccgtagagtaccatcccagaatatagaaatcagggaacaccttcttatctaataaacaataaaaccagataaaagttca  22802400                                                                                     --------->WOX13(1)                                                                                    =================                                                                                    ------>ZmHOX2a(2)                                                                                   ==================                                                                                   <------ZmHOX2a(2)                                                                                  <---------AGP1                                                                                  --------->AGP1          --------->ATHB12                        <---------ANAC58            ---------->DOF2         <---------YAB1                           <---------ANAC58           =============HOX2a_HOX2a        <---------TOE2(3)                        --------->At4g35610         <------ZmHOX2a(1)       <-----------GT1                       <----------DOF2            <---------HSFB2a(2)  --------->AHL20(2)                       --------->At4g35610   <---------ANAC58 --------->ARR11(3)  <---------AHL20(2)                     <---------ZAT18         <---------ANAC58 <---------ARR11(3) -------->TOE2(3)                        --------->ZAT18   --------->ARR11(3)==============HOX2a_HOX2a ----------DOF2                   ---------->DOF2<---------At4g35610    --------->HSFB2a(2)   aactttaatttacgattgcatcaatagttgagaataaaaagagtgagctttagcttacagagctcttgcttcttctcgaggaaagatctatcaagggttt  22802500                     --------->ANAC58                     --------->ANAC58               ---------->DOF2        <------ZmHOX2a(2)                     --------->SPL7                                        -       --------->ARR11(3)                 --------------->AtSPL3            --------->LBD16         <       <---------ARR11(3)                 --------->ZAT6                   --------->TOE2(3)   ------      <------ZmHOX2a(1)            --------->ARR11(3)                      <---------ANAC55(2) <----- ============HOX2a_HOX2a           <-----------ARR10              <------ZmHOX2a(2) --------->STY1(1) ============HOX2a_HOX2a           <---------ARR11(3)            <-----------HVH21  <---------STY1(1)   gagtagaaggatcatataaaagctcgaaactgttgaatatctcaacagtacgacctctctggacaccgatcacacatccgtaaaccctagggttttgctg  22802600                                                                                         <---------ARR14(2)             <---------MYB52(1)                                                          --------->ARR14(2)            <-------GAMYB                                  --------->ZAT2                <---------MYB52(1)     <---------ANAC58               --------->LBD16        <---------ZAT2             ------>ZmHOX2a(2)     <---------ANAC58              <---------ANAC46        <---------At4g35610    <---------ZAT6 -------->HSFB2a(1)           <---------At4g35610          --------->At4g35610--------->ZAT14 ---------HSFB2a(1)           <------NtERF2          <------ZmHOX2a(1)        --------->ZAT18     <-- --->HSFB2a(2)                --------->At4g35610 <------ZmHOX2a(1)           <---------ZAT14    <--- ----HSFB2a(2)              <---------RAP2.6(2)<-----------RAV1(2)   <-----------GT1  ===============   gaacattgcttcgccgttgtttgagccatggccgcttgcgcagattgaagcaggaggattgagctgagttttgaccctagtgtagtgatccgatatgttg  22802700                       ----------->GT1                      <---------TOE1(3)                      <---------TOE2(3)                  <----------DOF2                 <---------ANAC58                           ------>ZmHOX2a(2)                 <---------ANAC58            <---------HSFC1(2)                 <---------ANAC46            <---------HSFB2a(1)          <------ZmHOX2a(1)                  --------->HSFB2a(1) -------YAB1<---------REM1(1)         ----------->TGA1  --------->ETT(2) ------TOE2(3) ------->TEIL       <----------DOF2<------NtERF2                    <----------DOF2 ================HOX2a_HOX2a<-----------GT1  --------->HSFC1(2)       <----------DOF2   acgattaccaaaggatgtagcttgaaggttaaaccgcttgatgacgaaggtgccattgtcgatctctctctcctttgatgaattctttggtttttgggtt  22802800                                                                     <---------WRKY38(1)                                                                <---------ANAC58                                                               <---------LBD16                               ------------>CBF        ------>ZmHOX2a(2)                               <---------ATHB12      <---------AGP1  <---------WRKY12                           <---------AHL20(2)        --------->ARR14(2)                           --------->AHL20(2)        <---------ARR14(2)                       <---------AHL20(2)         ------>ZmHOX2a(1)<-----------HVH21                      <---------AHL20(2)        ------>ZmHOX2a(2)--------->LBD16                  <---------AHL20(2)           <------ZmHOX2a(2)<---------ANAC58                <---------RVE1(1)             <---------ARR14(2)<---------ANAC46                <---------CCA1(1)             --------->ARR14(2)--------->HSFB2a(2)               <---------GLK1(2)        --------->ARR11(1)   <---------SPL7               --------->ARR11(3)       --------->ARR14(2)<---------ARR14(2)               <---------   *TSS        <---------ARR11(3)       <---------ARR14(2)--------->ARR14(2)  ----------->GT1   tttagtttttttatgaagattttttttatttaaatcaatgtggattcggatcctagatcgggtcttccgggtcaactatatggatattagttttttctgt  22802900                                                                                                -----                                                                                            <--------                                                                                            ---------                                                                                          <----------                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                                  <------NtERF2                                    --------->YAB1                             <------MYB46(1)                                      <---------YAB1-----                           <---------MYB52(1)                                    <---------AHL20(2)                           <--------P                                            --------->AHL20(1)                           --------->ALFIN1                                      <---------AHL20(1)                          <-------GAMYB <---------ANAC58                         --------->AHL20(2)                       <---------LBD16  <---------ANAC58                        --------->YAB1-------            <------ZmHOX2a(1)<------MYB83             --------->AHL20(2)        --------->AHL20(2)    <------NtERF2   --------->CCA1(2)   <---------ANAC46      <-----------GT1   <---------AHL20(2) --GT1  --------->TOE1(2)<---------MYB46(3)    <-----------GT1<-----------------AGL1<---------AHL20(2)   atgggccgagcgtaggacttatatatgcggttgggcctcatgacttgtttttccaattacattttttcattttggaaactaattatattaattaacaaac  22803000                                        --------->ARR11(3)                                        <---------ARR11(3)                                       <---------RVE1(1)    <---------TOE2(3)                  --------->RVE1(1) ---->ANAC58     --------->ATHB12      <---------GLK1(1) -MYB52(2)    ------>MYB83             --------->GLK1(1) >MYB46(3)    --------->MYB52(1)      --------->ARR11(3)        <---------HSFB2a(2) -GT1    <-----------GT1   --------->YAB1                       --------->HSFB2a(2)                <- ---->ANAC58  ------>MYB46(1)         <---------ARR11(3)  --------------->AtSPL8         --------->YAB1 -->MYB52(1)--------->AtMYB61 --------->AHL20(2)          <---------------AtSPL8        <-------TEIL   gaaaataagataaaccaaacgattgagactcataaaatcagatatctgaagttgacaaaaaatgtactagaaatttgaaaacagacaacattcatcaaat  22803100                                               <---------ICU4                                   --------->MYB52(1)                                   ---------->DOF2<-----------GT1                          --------->MYB55(2)   --------->AHL20(2)                          <---------MYB46(3)   <---------AHL20(2)        ---------->DOF2<---------ANAC46    <---------YAB1      <---------YAB1 --------->ZAT14  ----------->GT1  --------->ANAC46     ----------->GT1       --- ----------GT1       <---------ZAT14 <---------TOE2(3)--------->LBD16     <---------ANAC46     <-----   ttttcaatatgaaagttcaatagttcagtggttagactaaaggttataattttttccacaaaatgtttgatttctagtgtgtaaattcttgcaagttaat  22803200           <---------ARR11(3)           --------->ARR11(3)           --------->GLK1(2)                                                                       <-          --------->RVE1(1)             <---------YAB1                                             --        --------->AHL20(2)           <---------YAB1                                           <------ ----------->GT1                   <-----------GT1         <---------AHL20(2)                 ------- <----------ID1                 ----------->GT1<---------REM1(1)                            <-------- ------->DOF2              --------->YAB1     <---------TOE2(3)                             --------- ----TOE2(3)      <---------At4g35610--------->ICU4     ------->TEIL        --------->ATHB12<--------   gaaaggaaaaaaaaatctagagatgcctagcatattgtaactattgttgatgtagatgaattttttttttttttttagttattgatgaaattagtgaagt  22803300  Previous    Next  AGI:  At5g56280.1    Description:  CSN6A (COP9 SIGNALOSOME SUBUNIT 6A). Identical to COP9 signalosome complex subunit 6a (CSN6A) [Arabidopsis Thaliana] (GB:Q8W206;GB:Q84WB5;GB:Q941I1;GB:Q9FG76); similar to CSN6B (COP9 SIGNALOSOME SUBUNIT 6B) [Arabidopsis thaliana] (TAIR:AT4G26430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66861.1); contains InterPro domain Mov34-1 (InterPro:IPR003639); contains InterPro domain Mov34/MPN/PAD-1 (InterPro:IPR000555) Range:  from: 22800610    to: 22802803    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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