Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->ANAC58                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                        --------->ANAC46                                                                        --------->ANAC58                                                                      --------->AtMYB61                                                                      <---------ALFIN1                                                                      ----------->RAV1(1)                                                                     --------->ANAC46                                                                     --------->ANAC58                      <---------ICU4                                 --------->ANAC58          ------>ZmHOX2a(2)                                        --------->ANAC46        --------->ARR14(2)                                         --------->ANAC58 ------>MYB46(1)        <---------ARR14(2)                                         --------->ANAC58 ------>MYB83    <---------At4g35610                                          <---------ALFIN1 <---------MYB59    --------->At4g35610                  <---------ARR11(3) <---------ARR14(2)  --------->ANAC58 -------->RAV1(1)  --------->ZAT6 --------->At4g35610       --------->ARR14(2)--------->MYB46(3) >ZmHOX2a(2)       --------->YAB1 <---------At4g35610       ------->TEIL--------->ANAC58 --ARR14(2)  --------->ANAC46  <---------MYB52(1)          <---------CCA1(2)--------->ANAC58 ->ARR14(2)<---------ALFIN1   <----------DOF2------>ZmHOX2a(1)   --------->ANAC46 ------->GAMYB    <-   caacatagctgatccacactatcagtatgaccctttagctcaaggtccttagccttgctctgtatccacacaccacacaaacaaccaaattacaaaaact  22741900                               <---------ICU4                               -------->HAHB4                            --------->YAB1                      ---------->DOF2                   --------->YAB1                                               <---------ICU4                <---------ICU4--------->ICU4                                    --------->YAB1          ----------->GT1 --------->ARR11(3)                                   <---------YAB1     ---         --------->DAG2   <---------ARR11(3)                                 <---------ICU4       <--        ---------->DOF2  --------->YAB1   <-----------GT1                    --------->YAB1       --- --------MYB59 --------->ICU4 <---------YAB1                              --------->YAB1          <--   acataactcaaaaagtaacaatgacaaagataataatcgagttttaactcaatctacaatacttctccatatgtattcatcatcatcaaaaacacataga  22742000               --------->DAG2               <---------------AtSPL8              --------->DAG2             ---------->DOF2            <---------MYB46(3)         <---------------AGL15         <---------AtMYB61                                --------->ANAC58         --------------->AGL15         --------->ALFIN1                             --------->ANAC58        <-----------------AG         <---------MYB52(1)                           --------->LBD16     <---------CCA1(2)       --------->ANAC55(2)                                 --------->ANAC46 ------>HSFC1(2)             <---------ANAC55(2)                        ----------->RAV1(1)<--------- -------HSFC1(2)----------->GT1----------->HVH21                 <---------MYB52(1) --------->ANAC58 ------>HSFB2a(1)          <-----------GT1                <---------ANAC58   <---------ARR14(2)------ -------HSFB2a(1)  ---------->DOF2   --------->ALFIN1     <---------ANAC58 ------->GAMYB--------->ANAC58   agttcccatagctcaaaaaggtaaagaaattacatgaccgtgtggttcgatattccaaatgcgagccgtttgatcaacagaacccgaagcaagctttgtt  22742100                                                      --------->At4g35610                 -----------                          --------->TOE1(3)           <---------At4g35610               --------->ZAT14                        ------->TEIL               <-------TEIL                         <---------ZAT14                    --------------->AtSPL8       --------->ARR14(2)            <---------AHL20(2)           --------->ANAC58                      <---------ARR14(2)            <---------YAB1 -DOF2     --------->ANAC58                      <---------GLK1(2)        <---------TOE1(2) ---->ID1  --------->ANAC46                  --------->LBD16     <---------TOE2(3)  <---------------AtSPL8   ccattcgaattccaagctactgaatgtaccttcaatccaaaaattcccccagattcagcaaaaaactagggtttcgcaagttttattgagtacagaaaat  22742200                                                                        <---------HSFB2a(1)                                                                 ---------->DOF2                                                           --------->ARR11(3)               <--------                   <-----------GT1      <---------ARR11(3) <---------ARR11(3)      ------>ZmHOX2a(1) >GT1    ----------->GT1          --------->ARR11(3)      <---------At4g35610<---------ATERF1(1)   tagactggagatagaaaaaaaaaaccttcttcttatgaccttgatattctctgctatgtaagctcttgaaaggaatcgtcgtctcctccattttttaatt  22742300                            ------>NtERF2                         <---------ANAC46                            <------NtERF2                        <------NtERF2                            <---------ATERF1(1)              --------->ANAC58                           --------->DEAR3(1)                --------->ANAC46          >>>>>>>>>GATA-1                     *TSS <---------RAP2.6(2)           ------>ZmHOX2a(1)            ----------->GT1                   ------>MYB46(1)                      --------->LBD16         --------->LBD16         <<<<<<<<<TBF1   <---------LBD16              ----------->RAV1(2) <---------ICU4 -AHL20(2)         ------>MYB83             <-----------ARR10--------->ANAC58 <---------LBD16   ctcaactcttcttcttcaaccttccttcgcggcctactgaatatcagagcttcgcttcctgaaacgcagcgtttagtcattccggtatagataaaccgaa  22742400                                     <-------GAMYB                                    <---------MYB46(3)                               --------->HSFB2a(2)                               <---------HSFC1(1)                         --------->At5g28300                        <-----------GT1                                  ----------->GT1                 ----------->GT1    ----------->GT1                 ---------->DOF2<---------ANAC46              --------->LBD16  <---------HSFB2a(2)           --------->MYB52(1)    ----------->GT1  -            <---------LBD16    --------->HSFC1(1)          <---------MYB52(2)     --------->MYB59 ---   tcgaattttagtaaaccggatgtaaaaaaccttctagatggttaagagtcttcagagagaaactaacaagaagagcggtaaaattgggtaaaatatgaaa  22742500                                             --------->YAB1                                             --------->ATHB12                                             <--------HAHB4                                       <---------ANAC55(2)                                       --------->ANAC58                                       --------->ANAC46                                       --------->ANAC55(2)                                     *TSS                                       --------->ANAC55(1)                         ------->GAMYB                                       --------->ANAC58                            --------->DEAR3(1)          ----------->GT1       --------->ANAC58                                   ----------->HVH21        ----------->GT1         --------->ANAC58  <-----------GT1                  --------->DEAR4(1)       --------->DAG2       --------->ANAC58 <---------ICU4                        --------->At1g77200     ---------->DOF2        --------->ANAC58<---------ATHB12   <---------AHL20(2)  --------->DREB2C(2) ---------->GT1         --------->At4g35610 <---------YAB1    --------->AHL20(2)  --------->DEAR3(2) ------->DOF2           <---------At4g35610 --------->ICU4   ----------->TBP      --------->MYB46(3)   caaagaaaaaaggtgaaaaaaaaaacagctaagcaaacaacaagtaatcatttcacagtctctataaaatgacctcttaaatccaccgacgttatagaga  22742600                           <---------At4g35610                           ------>NtERF2                          --------->DEAR3(1)                          --------->RAP2.3(2)                                                    <---                         --------->RAP2.3(1)                                                     <---                        ------>NtERF2                                                            ----                        --------->LBD16                                                          <---                       <---------ALFIN1                                                          <---                       --------->DEAR3(1)                                                     <------                       --------->ANAC46                                                  --------->YAB1                     ------>NtERF2     <<<<<<<<<TBF1                                    <---------YAB1              <---------ARR14(2)    <<<<<<<<<TBF1        --------->ARR14(2)      <---------HSFB2a(2)              --------->ARR14(2) <<<<<<<<<TBF1      ----------->RAV1(1)  <---------MYB52(1)   -------           <---------AtMYB61 <----------DOF2        ------>NtERF2<---------YAB1  --------->HSFB2a(2)         <----------DOF2<---------ATERF1(1)        ----------->HVH21    <-------GAMYB   --------->ICU4   ----------->RAV1(1)--------->ATERF1(1)          --------->ANAC46    <-----------RAV1(1) <---------YAB1  --------->MYB46(3) <---------ATERF1(1)           <---------ETT(1)<---------GLK1(2) --------->ICU4<-   gacaacaacagctttggttctgcctccgccgcttcttcttcttcttctaatctccgacagatttactctgattctgttgtcttcgagatgatgatgatgt  22742700                                                            <------NtERF2                                                           <---------SPL7                                                          --------->ALFIN1                                                          <---------DEAR3(1)                                                          <---------ANAC46                                                         <---------At4g35610                                                         <---------LBD16                                                         --------->At4g35610                                                         --------->ATERF1(1)                                                         <---------ABI4(1)                                                        <---------RAP2.6(1)                                                        <---------ATERF1(1)                                                        ------>NtERF2                                                        <---------RRTF1(1)                                                        <---------ERF1                                                        <---------RAP2.3(1)           <---------MYB46(3)                          <---------RRTF1(2)          <---------AtMYB61                            <---------ANAC46          <---------DEAR3(1)                           <---------DREB2C(2)          --------->ALFIN1                             --------->ATERF1(2)         xxxxxxxxxxxxxxxxxx>smallRNA(se3)              <---------RRTF1(3)         xxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------RAP2.6(2)        <---------MYB46(3)                             <---------RAP2.3(2)       <---------AtMYB61                               <---------RAP2.3(3)       --------->ALFIN1                                <---------DEAR3(1)     <------MYB46(1)                                   <---------ATERF1(2)     <------MYB83<---------MYB46(3)                    <---------ANAC58    <---------MYB46(3)                                <---------ABI4(1)    --------->MYB55(2)                                <------NtERF2                   <---------CCA1(2)   <----------DOF2         <------ZmHOX2a(1)         <---------ERF1           --------->ARR14(2)  <---------ANAC46       --------->ALFIN1           <---------DEAR3(1)     <---------ANAC55(1)  <---------ANAC58      <------ZmHOX2a(1)           --------->ALFIN1       --------->ANAC55(2)  <---------ANAC58 --------->ALFIN1              --------->ALFIN1          <---------ANAC46 <---------DEAR3(2)<---------ANAC46     <---------AtMYB61<------NtERF2     <---------ANAC58 ------ANAC58  <XXXXXXXXXXXXXXXXXXXXXMIR472   <---------AtMYB61   <------MYB46(1)  ---------->ID1   - ------bZIP60(2)<---------DEAR3(1)    <---------MYB46(3)<---------ORA47(2) <---------ANAC55(2)    --- ----->bZIP60(1)--------->ALFIN1     <---------AtMYB61--------->ATERF1(1)  >>>>>>>>>>HY5         ---- ------bZIP60(1)<---------AtMYB61    --------->ALFIN1<---------ATERF1(1)   <---------ANAC58      <--- ------ANAC58 <---------MYB46(3)     <---------DEAR3(1)<---------ANAC58   ----------->STF1    <------ ---bZIP60(1)<---------AtMYB61    --------->ALFIN1<---------MYB46(3)     <---------TGA2(2)    <------ -->bZIP60(1)<---------DEAR3(1)   <---------AtMYB61--------->ATERF1(1)  ----------->TGA1  <----------DOF2 -----NtERF2 --------->ALFIN1 <------ZmHOX2a(1)  <---------AtMYB61<------MYB83<---------ARR14(2) ----   cgtcgcttggtggtggtggtggtggaggaggaggaagtggtggtggtattggtggtggcggcggagggaggtttatgacgtattcgtcgtctctttcggt  22742800  Previous    Next  AGI:  At5g56130.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62349.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 22739708    to: 22742321    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g56140.1    Description:  KH domain-containing protein. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26480.1); similar to hypothetical protein OsI_008574 [Oryza sativa (indica cultivar-group)] (GB:EAY87341.1); contains InterPro domain K Homology; (InterPro:IPR004087) Range:  from: 22742595    to: 22745569    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version