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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
--------->
WOX13(1)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
>>>>>>>>>
MYB2
--------->
YAB1
--------->
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(1)
<---------
YAB1
<---------
ICU4
--------->
AHL20(2)
--------->
HSFB2a(2)
<<<<<<<<<
GATA-1
<---------
AHL20(2)
---------->
DOF2
<---------
ARR11(3)
--------->
AHL20(1)
<---------
AHL20(2)
<---------
ICU4
<---------
ARR11(3)
--------->
AHL20(1)
<---------
ATHB12
---------
GT1
<---------
ATHB12
--------->
GLK1(2)
--------->
AHL20(1)
<---------
HSFB2a(2)
--
ttacaatttatctatgataactaataaatattgcatagaaaatctaaaagaatcaaattttttaaaacaaatattttttttagaaaaccaattaattaag
22530400
<-
-----
-----
----------->
GT1
<----
---------->
DOF2
---------->
DOF2
<---------
SPL7
<-
----------->
GT1
--------->
TOE2(3)
<-----------
RAV1(1)
--------->
MYB52(1)
---------->
DOF2
<---------
YAB1
----------->
GT1
<----------
DOF2
-----
------->
DEAR3(2)
<----------
DOF2
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<----
aacagacggagtaatgtattctttaaagtgtttaaagagaatattatttcttaaagaatgttaaattgttagaaaacttatctttgtgggacgaagaaaa
22530500
<----------
DOF2
<---------
AHL20(2)
<-------
<---------
AHL20(2)
<---------
ARR11(3)
--------
YAB1
--------->
ARR11(3)
---->
AHL20(1)
--------->
ANAC58
<-------
---->
ARR11(3)
--------->
TOE2(3)
<-----------
ARR10
-----
ARR11(3)
----------->
GT1
<----------
DOF2
<---------
GLK1(2)
--------
AHL20(2)
<---------
ZAT6
--------->
TOE1(3)
---------->
DOF2
<-------
---->
ICU4
--------->
DAG2
--------->
TOE2(3)
--------->
ANAC58
<----------
DOF2
-----
AHL20(1)
---------->
DOF2
<-------
TEIL
---------->
DOF2
--------->
RVE1(1)
<--
tattattttcttttaaaaaaagttttgtattgttaaatctaaacatatacatcaaactttaaaaatcaaagcaaaaaaagaatatctctccttttgcatg
22530600
<--
----------->
GT1
xxxxxxxxxxxxx
--------------->
AGL15
<---------
ARR14(2)
<---------------
AGL15
--------->
ATHB12
--------->
ARR14(2)
--
AtLEC2
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ICU4
--------->
DAG2
<--
--
ANAC58
--------->
AHL20(2)
--------->
ARR11(3)
<---------
YAB1
---------->
DOF2
<--
--
ANAC58
<---------
AHL20(2)
--------->
TOE2(3)
--------->
YAB1
----------->
GT1
<---
--------
DOF2
<---------
AHL20(2)
<---------
TOE2(3)
<-------
TEIL
--------->
MYB52(1)
<---
cttttgacatattgaatttaatagctaattttcttaattaagatgttaaacttatggattcatgatttgaacaaaactgaaaaaaagtatatggaagcgt
22530700
--------->
YAB1
------->
GAMYB
------>
MYB46(1)
------>
MYB83
-------->
P
--------->
MYB52(1)
--------->
MYB55(1)
--------->
MYB52(1)
<---------
MYB55(2)
--------->
MYB46(3)
<-------
TEIL
<---------
MYB46(2)
-------
MYB46(3)
--------->
AtMYB61
--------->
TOE2(3)
xxxxxxxxx>
smallRNA(le3)
<---------
MYB111(2)
--------->
MYB46(3)
--------->
YAB1
----
MYB83
--------->
DEAR3(1)
<---------
MYB55(2)
<----------
DOF2
<
----
MYB46(1)
------>
MYB46(1)
<------
ZmHOX2a(2)
------>
MYB46(1)
<<<<<<<<<
TBF1
--
------
DEAR3(1)
--------->
YAB1
<------
ZmHOX2a(1)
------>
MYB83
<-----------
GT1
<--
------
AtMYB61
------>
MYB83
---------->
DOF2
----------->
GT1
<---------
AHL20(2)
<------
tggtgagattcatac
ctatcaaaatgaacaaaaggatcaccaaccgaatagtaaaaccaactactgtattttttcttcttctttcttaatttctctcttt
22530800
<---------
MYB52(2)
--------->
MYB46(3)
----------->
RAV1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC46
<---------
SPL7
--------->
ALFIN1
--------->
YAB1
--------->
TOE2(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
YAB1
<---------------
AtSPL8
------
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
*
TSS
--------->
TOE1(3)
<---------------
AtSPL3
<---------
AHL20(2)
----------->
GT1
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
---------
AHL20(2)
--------->
YAB1
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
CCA1(2)
------------>
CBF
-------
YAB1
--------->
AHL20(2)
<-----------
TBP
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
AHL20(2)
----
DOF2
--------->
YAB1
<-----------
RAV1(1)
--------->
TOE2(3)
--------->
ZAT18
<---------
ATHB12
attaaaaatttgtt
aattatatcataatcttaactgttgtatataaagtatttcttcctaaaatatacaaggtgtacgcaacaaatgccaataaaaatgg
22530900
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
TOE1(3)
--------->
AHL20(2)
--------->
TOE2(3)
----------->
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<----------
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
DAG2
--------->
AtMYB61
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------------->
AGL15
---------->
DOF2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(2)
------->
TEIL
<---------------
AGL15
<-------
----->
GT1
---------->
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-----------
GT1
<---------
ARR11(3)
tttcaaattaaaaagaaagaccaaaactcatatgaacctcaaaaacatagtatgctacttttagttaaaataaactttctcatttcaagttctatttttt
22531000
<------
ZmHOX2a(2)
<-----------
GT1
<---------
ARR11(3)
--------->
ANAC58
<---------
AHL20(2)
--------->
ANAC58
--------->
ANAC58
<---------
YAB1
<-----------
HVH21
<xxxxxxxxxxx
--------->
DAG2
----------->
GT1
--------->
YAB1
---------->
DOF2
<---------
MYB52(1)
---------->
DOF2
<------
ZmHOX2a(1)
<-----------------------
TaNAC69(2)
<xxx
--
AHL20(2)
<---------
YAB1
<---------
TOE2(3)
----------->
HVH21
--------->
ANAC58
----
ttgtcattcgcttagttattaatgctcaaaaagccatttctgaggattgttatttacataagtgacatgaagcatcacacgatctaaaagctgttagaac
22531100
----------->
GT1
--------->
bZIP60(2)
--------->
ANAC58
<---------
bZIP60(2)
------->
GAMYB
----------->
HVH21
--------->
YAB1
--------->
ANAC46
--------->
YAB1
--------->
YAB1
--------->
MYB46(3)
<---------
ICU4
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
At5g28300
-------->
P
<-----------
HVH21
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------->
GAMYB
--------->
ZAT6
xxxxxxxxxxxx
smallRNA(l2)
-------->
P
--------->
MYB46(3)
<---------
At4g35610
xxxxxxxxxxxxxxxxx
smallRNA(s2)
--------->
MYB52(1)
<---------
MYB111(2)
<---------
REM1(1)
----
------->
RAV1(1)
<---------
ATHB12
--------->
ANAC58
<---------
MYB55(2)
<---------------
AtSPL3
cacatacgaaggcaaacacaatcactatgtactaaccgcaaggtataacaacaacaacaacaaccatgacatgtcagactagttgtaccgctaacacaat
22531200
--------->
LBD16
<xxxxxxxxxxxxxxxx
<---------
ARR14(2)
--------->
LBD16
--------->
ANAC46
--------->
ARR14(2)
<---------
WRKY18(1)
<---------
ARR14(2)
--------->
WRKY38(1)
--------->
At4g35610
--------->
WRKY12
<---------
At4g35610
----------->
HVH21
--------->
ARR14(2)
<---------
ALFIN1
<---------
ARR14(2)
<xxxxxxxxxxxx
----------->
HVH21
XXXXXXXXXXXXXXXXXXXX>
MIR2112-3P
--------->
At4g35610
<---------
ALFIN1
<---------
LBD16
--------->
TOE2(3)
<---------
At4g35610
--------->
TOE2(3)
<---------
ALFIN1
<---------
LBD16
----->
YAB1
--------->
ALFIN1
--------->
SPL7
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
ARR14(2)
cagcctcaacttaggtgttgaaatcgcatcggacacccttgaccatacatcaaacgagcatccacatccacatctgcatccgcatccgcattcacatcgt
22531300
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AGI:
At5g55565.1
Description:
Encodes a defensin-like (DEFL) family protein.
Range:
from: 22527243
to: 22530814
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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