Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                  ------>ZmHOX2a(1)                           ------>ZmHOX2a(1)                                              <-----------GT1                              ------>ZmHOX2a(1)                                        <---------MYB52(1)                                <---------ALFIN1                                      <---------MYB46(3)                                ------>ZmHOX2a(1)                ------>ZmHOX2a(1) ----------->HVH21        <---------ANAC58            <---------ALFIN1    ------>ZmHOX2a(1) ------>ZmHOX2a(1)<-------GAMYB       <---------ANAC58          ------>ZmHOX2a(1)   gtaatccttctcttcttcctcttcctcttcttcgtcttgacggttaagtttcctcttcttgacttgcctcttctcacttacttcttcctcctcctcctct  22348600                                                 ------->MYC3                                                 ------->MYC2                                                --------->ANAC58                                                --------->ANAC58                                                --------->ANAC46                       <---------ARR14(2)                                     <---------ANAC46                                  --------->ARR14(2)                                     <---------ANAC58                               --------->ANAC58                                     --------->O2<-------MYC2                       --------->ANAC58                                     --------->ANAC55(2)                    --------->AGP1                                     <---------TGA1a                       <---------At4g35610                                     <---------ANAC55(2)                   <---------ZAT2                                     <---------ANAC58                      --------->At4g35610                                     --------->TGA1a                     <---------WRKY38(1)                            <---------ICU4    <---------ALFIN1           <---------WRKY12        ----               ---------->ID1        <---------O2<-------MYC3          ----------------------->TaNAC69(2) --------->REM1(1)       --------->YAB1<---------CCA1(2)               <-----------HVH21         <--- ----->At4g35610     <<<<<<<<<TBF1 <---------TGA1a                 <------ZmHOX2a(1)--------->ANAC46   gcttcatcatcttcttcgtcttcttcttcataatcagacgcgtgtctcacacgcgctcgactcttaacaggagggtcagctctagcacggctctggttca  22348700               <---------At4g35610               --------->At4g35610                            ------>ZmHOX2a(1)    --------->ARR11(3)                                       <---------ALFIN1    <---------ARR11(3)                               ------>ZmHOX2a(1) ----->At4g35610                              --------->TOE2(3)                               ------- ------At4g35610<---------GLK1(2)     ------>ZmHOX2a(1)    ------>ZmHOX2a(1)                <--------   gcttaagaacttgtttcagcttcttctgtctcttcttctcctcttcaacctcatcctcttcctcctcgtcgaagtaatcgtcgaaatcgaagttatacct  22348800                                                                            --------->CCA1(2)                                                                            =========================                                                                            <------ZmHOX2a(2)                                                                           <-----------ARR10                                                                           --------->ARR14(2)                                                                           --------->ARR11(3)                                                                           <---------ARR14(3)                                                                           <---------ARR14(2)                                                                           --------->ARR14(3)                                                                           <---------ARR11(3)                                                                           <---------AGP1                                                                          <---------CCA1(2)                                                                         ----------->ARR10                                                                       <------NtERF2                                                                      <-----------HVH21                                                                      ------>NtERF2                                                                      ----------->RAV1(1)                                                                     --------->RRTF1(2)                                                                     --------->RAP2.3(3)                                                                     --------->DREB2C(2)                                                                     --------->DEAR3(1)                                                                     <---------ATERF1(2)                                                                     --------->ATERF1(2)                                                                     --------->RAP2.3(2)                                                                     --------->RRTF1(3)                                                                    --------->ATERF1(1)                                                                    <------NtERF2                                                                    --------->ORA47(2)                                                                    --------->RAP2.6(1)                                                                    --------->RRTF1(1)                                                                    --------->RAP2.3(1)                                                                    --------->ERF1                                                                   ------>NtERF2                                                                   <---------RAP2.3(1)                                                                   <---------ATERF1(1)                                                                  <---------ALFIN1                                                                  --------->DEAR3(1)                                                                  <---------DEAR3(1)                                                                  --------->ANAC46                          <---------At4g35610                    --------->ABI4(1)                          --------->At4g35610  <------NtERF2     <---------ABI4(2)                       --------->LBD16<---------ARR14(2)         ------>NtERF2                  <----                      --------->DEAR3(1)      --------->LBD16    <------NtERF2                 ------             --------->WRKY38(1)--------->ARR14(2)              --------->DEAR3(1)         <---------ETT(2)             ----------->HVH21  <---------ARR14(2)              <---------ATERF1(1)  <xxxxxxxxxxxxxxx             --------->WRKY12  <---------CCA1(2) --------->At4g35610--------->DEAR4(2)  <---------SPL7     --------->At4g35610  <---------ZAT2    <---------LBD16   ------>NtERF2--------->AGP1 --------->SPL7     <---------At4g35610<------NtERF2 --------->ARR14(2)     --------->ANAC58       ----------->HVH21 -->ANAC46 <----------DOF2--------->GLK1(1)--------->ANAC46  --------->ANAC58------>ZmHOX2a(2) <----- ---GT1 ------>NtERF2<---------LBD16--------->LBD16          --------->ANAC46========================   cacatttcgctgcctttgacctcgccggagctcatatcccgattcacgcggagatgaactactacgccgcgccgccagatctgccttcgacggacgacct  22348900                 ------>ZmHOX2a(2)                --------->At4g35610                <------ZmHOX2a(2)     <---------MYB52(1)                                                       --------->MYB46(3)    <-----------HVH21                                                        --------->ANAC46 ------>ZmHOX2a(1)----------->HVH21                                          --------->ANAC58 ======================HOX2a_HOX2a         <<<<<<<<<TBF1                     --------->ANAC58 =======================HOX2a_HOX2a     <<<<<<<<<TBF1                       ------->GAMYB =======HOX2a_HOX2a             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ALFIN1 ------DOF2     <---------At4g35610  <<<<<<<<<TBF1                   <---------ZAT18 --->AtMYB61   --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46 xxxxxxxxsmallRNA(se3)         <<<<<<<<<TBF1  <<<<<<<<<TBF1          --------->ZAT14             ---- ----DAG2      <---------ARR14(2) <<<<<<<<<TBF1  <<<<<<<<<TBF1       <---------ZAT14             <--- =======HOX2a_HOX2a          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ZAT18  <----------DOF2   ttcctccgtcgtctcgcgatctgactcatcttcttcttcttcttcttcttcttcttctctatcgaactcagtgcacaacacccaatccctttctctctct  22349000                                                    <------ZmHOX2a(1)                                                   <------MYB46(1)        --------->ARR11(3)                         <------MYB83        <---------ARR11(3)                       <--------P                                ------->GAMYB      <---------TOE2(3)                      <---------ANAC46                             --------->MYB46(3)      <---------TOE1(3)                      <---------LBD16                           <---------WRKY12  --------->At4g35610                     <-----------GT1                              <---------WRKY45  <---------At4g35610                  *TSS <---------LBD16                            <---------WRKY38(1) ----->ZAT14                           <---------AHL20(2)  ---------->DOF2            --------->WRKY18(1) ------ZAT14                   <----------DOF2--------->LBD16                   <----------DOF2   atacagctaaggtctctctctctctctctgcaactttctatttttttccgggtaggagagagaaaggaagaaaatgaagaaacttttggtcaaccgaagc  22349100                                                                    --------->WOX13(1)                                                                  <------NtERF2                                                                  <---------MYB52(1)                                                                 ------>NtERF2                                                                 <-----------HVH21                                                                 <---------RAP2.6(3)              ---                                                                --------->DEAR3(1)               <---                                                             --------->ANAC46                   <----                                                           <---------DOF5.7(2)  <---------MYB52(1)---                      <---------AHL20(2)                  <---------WRKY38(1)   --------->DOF5.7(2)                   <---------ARR14(2)                     <---------WRKY12 --------->ANAC46    ------               <-------TEIL                     <---------LBD16 --------->RAP2.6(2)         -------->P        --------->TOE2(3)                     --------->TOE2(2) --------->RAP2.3(2)<---------At4g35610        --------->TOE1(3)    <---------TOE2(3)--------->TOE1(2)--------->RAP2.3(1)--------->MYB52(2)      ------->TEIL --------->ARR14(2)        ----------->RAV1(2)--------->RAP2.3(3)--------->At4g35610   taagtctgaaccttaggttcggatataatttgatgtattcaaaaaaaacctgcgcgatggtaaacgccgtcaattagacgacgttagctactactacccg  22349200                                                                                    --------->ANAC58                                               --------->TGA2(2)                    --------->ANAC58                                              <-----------TGA1             --------->O2  <---------DAG2          --------------->AGL15               <-----------HVH21            --------->bZIP60(2)          <---------------AGL15              --------->O2                  <---------TGA1a         <---------ANAC55(2)                 --------->ANAC46              <---------ANAC55(2)         --------->ANAC55(2)                 <---------O2                  --------->ANAC55(2)   --------->LBD16                           --------->TGA1a               --------->ANAC55(1) <---------LBD16               <---------AHL20(2)         <---------YAB1   --------->ANAC58 ------>WRKY38(1)          <---------YAB1    --------->bZIP60(2)           --------->ANAC46 ------MYB52(1)            <---------AHL20(2)--------->ANAC58              --------->ANAC58 -------HVH21           --------->AHL20(2)   --------->ANAC58              --------->TGA1a   -------- ------>WRKY12          <---------AHL20(2)  <-----------STF1               =========================bZIP_DOF --->ANAC46<---------AHL20(2)  --------->AHL20(2)      <---------ARR11(3)  <---------O2  <----------DOF2   ttgcccggcttacttaattttgttatttttttattaattgtatttccacgtcatcaatttcttattgaagcttagacacgttactcacgcgctttacact  22349300                                   <-----------GT1   <---------AHL20(2)                                --------->YAB1      --------->AHL20(2)     ------->TEIL                                <---------ICU4      <---------AHL20(2)  --------->ANAC55(2)                          <---------ZAT6    <---------At5g28300         <---------ANAC55(2)         -            <---------TOE1(3)  --------->ICU4  --------->At5g28300   <------ZmHOX2a(2)       --------      <---------ANAC46    ----------->GT1  <-----------GT1          --------->ARR11(3)      -------->P ->ZAT6     <---------TOE2(3)  <---------YAB1 ----------->GT1       <---------ARR11(3)<-----------GT1   aggcacttgtgtttaaggtatttcacaagtgttataattacaaaattactgtaattaaatgcacgagtaagatcatgtatttgtgttttaaacttaccca  22349400                                                                                            <--------                                                                                            ---------                                                                                     <---------WOX13(1)                                                                                   --------->ATHB12                                              --------->At4g35610                 --------->AHL20(2)           <-------MYC3             <---------------AtSPL8                        <---------AHL20(2)           ------->MYC3             --------------->AtSPL3                    ------>ZmHOX2a(2) ---------->GT1                     --------------->AtSPL8<---------YAB1   --------->YAB1   --------- --------->AG                  <---------YAB1<---------ARR11(3)           <---------YAB1   <------NtERF2   aaatgtataaacacgttttaaaaatgaaacattatgttgaagtacaacatctgaattttcatcaatgtttctgactatgatcgtttaattggtgtcggaa  22349500  Previous    Next  AGI:  At5g55040.1    Description:  DNA binding. similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38940.1); contains InterPro domain Bromodomain (InterPro:IPR001487) Range:  from: 22344466    to: 22349039    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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