Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------ALFIN1                                              <---------AHL25(1)     --------->ANAC58                                              <---------AHL12(1)     --------->ANAC58                                              --------->AHL12(1)     --------->ANAC46                                             <---------AHL20(3)   <---------ALFIN1                                        --------->ANAC46 ------>KAN1                                               --------->ANAC58 -------GT1                                      --------->GLK1(2)--------->AHL20(3) -->AHL20(2)                                     --------->RVE1(2)--------->AHL12(2) -->YAB1                                        <---------GLK1(2) --------->AHL25(2) --YAB1                                       --------->LBD16     <---------AHL25(2) --YAB5                                      --------->HSFB2a(2)  <---------AHL12(2)         -------- -AHL20(3)                                   <---------HSFB2a(2) --------->YAB1   --------->WOX13(1) >AHL20(3)                           ------->TEIL<---------GATA12--------->AHL12(2)  --------->YAB1 >WOX13(2)              <---------CCA1(2)   <---------LBD16--------->ANAC58     <---------KAN1  <---- -WOX13(2)       <------ZmHOX2a(1)   <-----------GT1      XXXXXXXXXXXXXXXXXXXX>MIR2939    --------->RVE1(2)   acatcccacaccatcttcaggactccatctctccctatgtaacttctccagaatctaaaacacacaaaaataatccattagcatctatcaaaaatcaaag  22318500                       --------->ANAC46                     <---------ALFIN1                      --------->LBD16          ---------->DOF2                                <---------LBD16       --------->CCA1(2)                             <----------DOF2  --------->ANAC58          <----      <---------ARR11(3)       <-----------GT1       <---------DAG2   --------->ANAC58          >>>>> -->DOF2<-------TEIL --------->ANAC46        --------->RVE1(2)      ---------->DOF2          -------- -----At4g35610  <---------ALFIN1          --------->DOF5.7(1) <---------KAN1    <-----------GT1-----   ctgatcaagatacaaagctacacacacagcaataaactctatcgaaaaatcgaaactttaccggaataacaaaagccagagttttgccagacccagttct  22318600                      --------->ANAC46                    <---------------AGL15                   ----------------->AGL2            --------->ARR11(3)            <-----------ARR10            <---------ARR11(3)            --------->RVE1(2)                                                               <--------           --------->RVE1(1)                                                                <--------           <---------KAN1          <------ZmHOX2a(1)                   ------->TEIL        <---------DOF5.7(1) --------->At4g35610--------------->AGL15                 <-----------HVH21               ------>ZmHOX2a(1) -----HSFB2a(2)    ================================================================================== >>ZML2  --------->YAB1  ---------->DOF2                 --------->WOX13(1)      <----------DOF2 ->AGP1  <---------GLK1(2)--------->DAG2    <---------ALFIN1--------->YAB1     <---------KAN1  ------ ---->HSFB2a(2)    ----------------->AGL3  --------->At4g35610 --------->RVE1(2)<---------DOF5.7(1)   agcagcaccaagaatatctcttccacataaagcatgaggaatagcagcactctgaacatcagtcatatcaacgtatttcgcatctttcaatcctcttttc  22318700                                                                                                  <--                                                                                                 ----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              <------                                                                                         ============                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                        --------->KAN1                                                                                        <------ZmHOX2a(2)                                                                                        =============                                                                                        =============                                                                       ------>NtERF2   <---------GATA12                                                                     ---------->ID1    --------->ARR11(3)                                                                   <-----------GT1     <---------RVE1(2)     --------------->AGL15                                      <---------DOF5.7(1)    <---------ARR11(3)     <---------------AGL15                                     <---------DOF5.7(1)     --------->GATA12    <-----------------AGL1                                     <---------MYB52(1)      <---------ARR14(2)    ----------------->AGL1                                    <---------RAP2.6(3)      <---------ARR11(2)    ----------------->AG --------->HSFC1(2)                  <---------ANAC58          --------->ARR14(2)    <-----------------AG <---------HSFC1(2)                  <---------ANAC58          --------->ARR11(2) --------->KAN1 <---------WOX13(2)  ----------->RAV1(2)      <---------ANAC46    <----------DOF2<---- -DOF5.7(1)    --------->MYB52(1)   --------->At4g35610     <------NtERF2       <---------HSFB2a(1) --DOF2     --------->ANAC46      <---------ALFIN1         ------>NtERF2  --------------------->WRI1 ====================MADS_MADS  <---------ALFIN1           --------->ABI4(2)    --------->HSFB2a(1) ---->ID1   --------->ANAC55(2)------>ZmHOX2a(1)     --------->MYB52(1)<---------RAP2.6(3)    <------   gttttatccgatataggtaactgagcaaacttcctcacacctgcataccgagagaaaacggtgccgtttttgccgtcttcggactttccgatcttcgaat  22318800     --------->DOF5.7(1)   <------ZmHOX2a(1) --------DOF2                          <---------LBD16                      <---------AHL25(3) ----->YAB5              >>>>>>>>>GATA-2                                    <---------AHL25(1) ----ARR11(1)            <---------GATA12  --------->ARR14(2)               --------->AHL25(1) ----ARR14(2)            >>>>>>>>>GATA-3   <---------ARR14(2)            --------->ARR11(3) --->GATA12--------->ANAC58          --------->GATA12      <---------ALFIN1 <---------AHL12(3) ->TEIL  <------ZmHOX2a(1)           --------->ARR11(2)   --------->MYB46(3)<---------AHL20(2) --->GLK1(2)      ---------->DOF2    <---------GATA12    <------ZmHOX2a(2)  --------->AHL12(3) --->ARR14(2)    --------->YAB1      <---------ARR14(2) <---------ARR11(2) <---------AHL12(1) ---CCA1(2)--------->ANAC58          <---------ARR11(2) <---------GATA12 <---------ARR11(3) =========HOX2a_HOX2a    >>>>>>>>>GATA-1  <---------MYB52(1)         <---------At4g35610 ===============HOX2a_HOX2a          --------->ARR14(2) --------->GATA12 --------->GATA12 ===============HOX2a_HOX2a       ------>ZmHOX2a(1)     --------->ARR11(2) --------->AHL25(3) =========HOX2a_HOX2a    >>>>>>>>>GATA-4 --------->LBD16--------->ARR14(2) --------->AHL20(2) -----KAN1 --------->ANAC46   <---------ARR14(2)  --------->KAN1   <-----------RAV1(2) ---ARR14(1)    <---------ATHB12  ==============================HOX2a_HOX2a--------->AHL12(1)   ctttaggaagaggacgcaatgaaagtggattgaatcctgaatccggtttctgtgattcgatccactgcttcagaagatttatttcttcgacttcgttgag  22318900                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                              ---------->DOF2                                                                         --------->CCA1(2)                                                                        <---------ARR14(2)                                                                        <---------RVE1(2)                                                                        <---------ARR11(2)                                                                        --------->ARR11(2)            <---------ICU4                                              <---------ARR11(3)            --------->KAN1                                            --------->LBD16           ------>ZmHOX2a(1)                                         <---------------AGL15          --------->TOE2(3)                                          --------------->AGL15     --------->At4g35610                                            <-----------------AG  <---------KAN1                                                    ----------------->AGL1 <---------GATA12                                                   <-----------------AGL1 ------->TEIL                                                       <-----------------AGL3 --------->GLK1(2)                        <---------ICU4            ----------------->AGL3 <-----------ARR10                  <-----------GT1                 ----------------->AGL2 --------->ARR14(2)              <---------ICU4                  --------->At4g35610 <---------ARR14(2)            --------->AHL12(2)      --------->ANAC58 --------->ARR11(3) <---------ARR11(2)            --------->WOX13(2)      --------->ANAC46 --------->ARR11(1) --------->ARR11(2)            <---------WOX13(2)      --------->ANAC58 --------->ARR14(2) --------->GATA12  <---------MYB52(1)<---------At5g28300         <---------At4g35610   acgaatctgcttcctcattcccttagtcttcttaatttttaccatcttgacacaaacacgaagttagagctccagatatggaaagcttacgacttgagag  22319000                                                  <-------TEIL                                                 --------->CCA1(2)                                                --------->ARR11(2)                                             <---------WOX13(1)            --------->WOX13(2)                                        --------->CCA1(2)                  <---------WOX13(2)                                       --------->GATA12                    <------------CBF     -----               --------->At4g35610     <---------RVE1(2)                ------------>CBF        -----            --------->DOF5.7(1)        <---------GATA12         <---------REM1(1)           <--------            ---------->DOF2          <---------TOE1(3)      --------->ARR11(3)            --------->YAB5          ---------->DOF2    <---------TOE1(3)  <---------ARR11(2)  --------->At4g35610 <---------TOE1(3)    <---------KAN1           <---------TOE2(3)  <---------RVE1(2)   <---------At4g35610 <---------TOE2(3)  <---------GLK1(2)   ---------->DOF2<---------TOE2(3)      <---------ARR11(3)    ----------->GT1  <-   gctagaatttgcaaaagagcagacaaaagttagggttttaagatttgatagatacacaagaagatgttgaagcagccaattgaagggtttaacgatgagt  22319100                                                      --------->DOF5.7(1)                                                    ---------->DOF2                                                <-------TEIL                                               --------->CCA1(2)                                              <---------ARR14(2)                                              <---------ARR11(2)                                              --------->ARR11(2)                  <---------------AGL15       --------->ARR14(2)                  --------------->AGL15      <------ZmHOX2a(1)            <---------AHL25(2)               <-----------GT1             <---------TOE2(3)              <---------AHL20(2)           --------->AHL20(2)             --------->YAB1                  --------->AHL25(1)           <---------AHL20(2)            <---------ATHB12                 --------->AHL25(2)     <----------DOF2                 ------------>CBF---------->DOF2     <---------DOF5.7(1) ------>TGA1 --------->WOX13(2)     ----------------->AGL1        ---------->DOF2 ------>HVH21<---------WOX13(2)     <-----------------AG      <---------ATHB12   ---------->ID1 -YAB1<---------DOF5.7(1)           <-----------------AGL1------------>CBF--------->AHL12(3) --------bZIP60(2)====================================MADS_MADS--------->YAB1   <-----------GT1<-----   gacgatgctttttttaattaccaaaaaaactaatctaggcccaataaggatacacaaaggcccaataacaaagcattttttttttcgcttccctcgtcta  22319200                 <---------GLK1(2)                 <---------RVE1(2)               <---------YAB1         ------>ZmHOX2a(2)                                                               <---------ZAT14        <---------GLK1(1)                                                                --------->ZAT14        --------->GLK1(1)                                                                --------->ZAT18       <---------ARR14(2)                                                               <---------KAN1       --------->ARR14(2)                                                           <---------ANAC46       <---------ARR11(3)                                                           <---------ANAC58       <---------AGP1--------->HSFB2a(2)                                            <---------ANAC58       <---------GATA12                                                   <---------AHL20(2)       --------->GATA12    *TSS                                           <---------AHL12(3)       --------->ARR11(3)--------->ARR11(2)                               --------->AHL20(2)       --------->ARR11(2)--------->ARR14(2)                 --------->TOE1(2)    <---------GATA12 ---       <---------ARR11(2)<---------ARR11(2)       <-----------RAV1(1)     --------->AHL12(3)  -------      <---------CCA1(2)  <---------ARR14(2)    <----------DOF2          --------->AHL20(2)  <--------   <---------LBD16   <---------HSFB2a(2)      <---------DOF5.7(1)  <-------TEIL --------->KAN1<------ ----CCA1(2) <---------At4g35610          ---------->ID1<---------ZAT18 --------->AHL12(3)  ---------   tcttctctggatctcttctgattctcgaatccctatttgtcttcgtcttcttttgttgtgaacttgcgatacatatatatatagatgcgagtacaccgga  22319300                                                                                              <------                                                                                             <-------                                                                                           --------->YAB1                                                                                           <---------ICU4                                                                                          <---------YAB1                                                                                          <---------YAB5                                                                         <---------DOF5.7(1) <-------                                                                 ------>ZmHOX2a(2)      --------->YAB1                                                                 ======================HOX2a_HOX2a                                                                <------ZmHOX2a(2)       <---------ICU4                                                                =======================HOX2a_HOX2a                                                               --------->GATA12        <---------YAB1 -------->GT1                                                  <---------GATA12 ------>ZmHOX2a(1) -->ZAT14                       <---------KAN1                 --------->ARR11(3)   <---------YAB5 -LBD16                  <---------RVE1(2)          ----------->GT1  --------->ANAC58  <---------YAB5 ---ZAT14           <---------RVE1(2)           --------->ARR11(3)   --------->ANAC58  --------->ICU4 >ANAC46           --------->ATHB12       <---------HSFB2a(2)  <---------ARR11(3)  <-----------TGA1   ctgtgaaattttggaacgaattgatttgatttgaatatggcaatcgcgaagaaattggaaaatgagatctcacgctcttctccttcgtcatcatcatcat  22319400  Previous    Next  AGI:  At5g54910.1    Description:  DEAD/DEAH box helicase, putative. Identical to Probable DEAD-box ATP-dependent RNA helicase 32 (RH32) [Arabidopsis Thaliana] (GB:Q9FFT9); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80934.1); similar to DEAD-box ATP-dependent RNA helicase 32 (GB:Q0D622); similar to unnamed protein product [Vitis vinifera] (GB:CAO38967.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like Range:  from: 22315783    to: 22318945    Orientation: Reverse Links:  TAIR  MIPS  AIP    AGI:  At5g54920.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82076.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 22319227    to: 22323021    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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