Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->ANAC58                                      --------->ANAC46     --------->ANAC58                                      --------->ANAC58     --------->ANAC46                           <---------GLK1(2)     <---------ALFIN1                         --------->LBD16   <---------ALFIN1                          --------->HSFB2a(2) -------GT1                                  <---------HSFB2a(2) --------->YAB1                 <---- -->YAB1                             <-----------GT1      XXXXXXXXXXXXXXXXXXXX>MIR2939       -------- -->AHL20(2)            <---------CCA1(2)   <---------LBD16--------->ANAC58          --------->YAB1 --YAB1          <------ZmHOX2a(1)   ------->TEIL--------->GLK1(2)                --------->WOX13(1)   acatcccacaccatcttcaggactccatctctccctatgtaacttctccagaatctaaaacacacaaaaataatccattagcatctatcaaaaatcaaag  22318500                       --------->ANAC46                     <---------ALFIN1          ---------->DOF2                                             --------->ANAC58       --------->CCA1(2)                                   --------->LBD16                      <----      <---------ARR11(3)       <-----------GT1           <---------LBD16         <-----------GT1----- -----At4g35610  <---------ALFIN1                    <---------DAG2   --------->ANAC58          >>>>> -->DOF2<-------TEIL --------->ANAC46                <----------DOF2---------->DOF2          --------   ctgatcaagatacaaagctacacacacagcaataaactctatcgaaaaatcgaaactttaccggaataacaaaagccagagttttgccagacccagttct  22318600                      --------->ANAC46                    <---------------AGL15                   ----------------->AGL3            <-----------ARR10            --------->ARR11(3)            <---------ARR11(3)           --------->RVE1(1)       <------ZmHOX2a(1) --------->At4g35610--------------->AGL15                 <-----------HVH21                    ------ -----HSFB2a(2)    ================================================================================== ---->HSFB2a(2)    ----------------->AGL2                --------->WOX13(1)                 <-------- >>ZML2  --------->YAB1  ---------->DOF2    <---------ALFIN1--------->YAB1       <----------DOF2 ->AGP1  <---------GLK1(2)--------->DAG2   --------->At4g35610         ------->TEIL       ------>ZmHOX2a(1)   agcagcaccaagaatatctcttccacataaagcatgaggaatagcagcactctgaacatcagtcatatcaacgtatttcgcatctttcaatcctcttttc  22318700                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                         ============                                                                       ------>NtERF2    =============                                                                     ---------->ID1     <------ZmHOX2a(2)               --------->MYB52(1)                                  <-----------GT1      =============     <---------------AGL15                                     <---------MYB52(1)      --------->ARR11(3)     --------------->AGL15                                    <---------RAP2.6(3)      <---------ARR11(3)    ----------------->AG <---------HSFC1(2)                  <---------ANAC58          --------->ARR14(2)    <-----------------AG --------->HSFC1(2)                  <---------ANAC58          <---------ARR14(2)    <-----------------AGL1          ----------->RAV1(2)      <---------ANAC46    <----------DOF2  <--    ----------------->AGL1          --------->At4g35610     <------NtERF2       <---------HSFB2a(1) ---->ID1   --------->ANAC55(2)   <---------ALFIN1         ------>NtERF2  --------------------->WRI1 ====================MADS_MADS  <---------ALFIN1           --------->ABI4(2)    --------->HSFB2a(1) --DOF2     --------->ANAC46   ------>ZmHOX2a(1)     --------->MYB52(1)<---------RAP2.6(3)    <------   gttttatccgatataggtaactgagcaaacttcctcacacctgcataccgagagaaaacggtgccgtttttgccgtcttcggactttccgatcttcgaat  22318800           --------->ANAC58           --------->ANAC58   <------ZmHOX2a(1) --->ARR14(2) ----ARR14(2)            >>>>>>>>>GATA-4 ----ARR11(1)            >>>>>>>>>GATA-2   --------->ARR14(2) --->GLK1(2)      ---------->DOF2          <---------ARR14(2)            <---------ARR11(3) ->TEIL  <------ZmHOX2a(1)             <---------LBD16                   --------->ARR11(3) ---CCA1(2)--------->ANAC46          <---------ARR14(2)              <---------At4g35610 ===============HOX2a_HOX2a          --------->ARR14(2)    <---------ALFIN1 =========HOX2a_HOX2a    >>>>>>>>>GATA-3  <---------MYB52(1)       <-----------RAV1(2) =========HOX2a_HOX2a    >>>>>>>>>GATA-1 --------->LBD16  --------->MYB46(3) ===============HOX2a_HOX2a   <---------ARR14(2)         <------ZmHOX2a(2) --------DOF2    --------->YAB1   ------>ZmHOX2a(1)     --------->ARR14(2)  <---------AHL20(2) ---ARR14(1)    <---------ATHB12  ==============================HOX2a_HOX2a--------->AHL20(2)   ctttaggaagaggacgcaatgaaagtggattgaatcctgaatccggtttctgtgattcgatccactgcttcagaagatttatttcttcgacttcgttgag  22318900                                                                                 --------->At4g35610                                                                                 <---------At4g35610                                                                              ---------->DOF2                                                                         --------->CCA1(2)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                      --------->LBD16                                                                     --------------->AGL15                                                                     <---------------AGL15                                                                    <-----------------AGL3                                                                    ----------------->AGL2            <---------ICU4                                          ----------------->AGL1           ------>ZmHOX2a(1)                                        <-----------------AG          --------->TOE2(3)                                         <-----------------AGL1     --------->At4g35610                                            ----------------->AGL3 <-----------ARR10                                     --------->ANAC46 <---------ARR11(3) <---------ARR14(2)                       <---------ICU4         <---------At4g35610 ------->TEIL                       <-----------GT1    --------->ANAC58 --------->ARR11(3) --------->GLK1(2)               <---------ICU4        --------->ANAC58 --------->ARR11(1) --------->ARR14(2)<---------MYB52(1)<---------At5g28300         --------->At4g35610   acgaatctgcttcctcattcccttagtcttcttaatttttaccatcttgacacaaacacgaagttagagctccagatatggaaagcttacgacttgagag  22319000                                                                           <------------CBF                                             <---------WOX13(1)         ------------>CBF        -----                                        --------->CCA1(2)           <---------At4g35610         -----               --------->At4g35610   <---------TOE1(3)      <---------ARR11(3)              <--------            ---------->DOF2  <---------TOE1(3)    <-------TEIL  <---------REM1(1)       <---------TOE2(3)          ---------->DOF2    <---------TOE2(3)   --------->CCA1(2)  --------->At4g35610 <---------TOE1(3)  <---------GLK1(2)   ---------->DOF2<---------TOE2(3)      --------->ARR11(3)    ----------->GT1  <-   gctagaatttgcaaaagagcagacaaaagttagggttttaagatttgatagatacacaagaagatgttgaagcagccaattgaagggtttaacgatgagt  22319100                                                    ---------->DOF2                                                <-------TEIL                                               --------->CCA1(2)                                              --------->ARR14(2)                                              <---------ARR14(2)                                             <------ZmHOX2a(1)                                           <---------TOE2(3)                  --------------->AGL15   --------->YAB1           --------->AHL20(2)        ------------>CBF---------->DOF2     <----------DOF2                ----------------->AGL1 ------>TGA1      ====================================MADS_MADS   ---------->DOF2 ------>HVH21  <-----------GT1      <-----------------AGL1     --------->YAB1    ---------->ID1 -YAB1     <---------AHL20(2)       <-----------------AG      <---------ATHB12  <-----------GT1 --------bZIP60(2)<---------------AGL15  <---------ATHB12 ------------>CBF<---------AHL20(2)   <-----   gacgatgctttttttaattaccaaaaaaactaatctaggcccaataaggatacacaaaggcccaataacaaagcattttttttttcgcttccctcgtcta  22319200                 <---------GLK1(2)               <---------YAB1         ------>ZmHOX2a(2)                                                                        ---        --------->GLK1(1)                                                                     <------        <---------GLK1(1)                                                                --------->ZAT14       <---------ARR14(2)                                                                --------->ZAT18       <---------ARR11(3)                                                                <---------ZAT14       --------->ARR11(3)  *TSS                                                     <---------ANAC58       <---------AGP1<---------HSFB2a(2)                                  --------->AHL20(2)  -------       --------->ARR14(2)<---------ARR14(2)                 --------->TOE1(2)       <---------ANAC46      <---------CCA1(2)  --------->ARR14(2)       <-----------RAV1(1)     <---------AHL20(2)<--------   <---------LBD16   --------->HSFB2a(2)       <----------DOF2     <-------TEIL     <---------ANAC58 ----CCA1(2) <---------At4g35610          ---------->ID1<---------ZAT18 --------->AHL20(2)  ---------   tcttctctggatctcttctgattctcgaatccctatttgtcttcgtcttcttttgttgtgaacttgcgatacatatatatatagatgcgagtacaccgga  22319300                                                                                              <------                                                                                             <-------                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                ------>ZmHOX2a(1)                                                                 ------>ZmHOX2a(2)        <---------YAB1                                                                 ======================HOX2a_HOX2a                                                                <------ZmHOX2a(2)       --------->YAB1 -------->GT1                                                   =======================HOX2a_HOX2a ---ZAT14                                                      --------->ARR11(3)       <---------ICU4 -->ZAT14                                           ----------->GT1  --------->ANAC58  --------->ICU4 -LBD16                                         --------->ARR11(3)   --------->ANAC58  <---------YAB1 >ANAC46           --------->ATHB12       <---------HSFB2a(2)  <---------ARR11(3)  <-----------TGA1   ctgtgaaattttggaacgaattgatttgatttgaatatggcaatcgcgaagaaattggaaaatgagatctcacgctcttctccttcgtcatcatcatcat  22319400  Previous    Next  AGI:  At5g54910.1    Description:  DEAD/DEAH box helicase, putative. Identical to Probable DEAD-box ATP-dependent RNA helicase 32 (RH32) [Arabidopsis Thaliana] (GB:Q9FFT9); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80934.1); similar to DEAD-box ATP-dependent RNA helicase 32 (GB:Q0D622); similar to unnamed protein product [Vitis vinifera] (GB:CAO38967.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like Range:  from: 22315783    to: 22318945    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g54920.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82076.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 22319227    to: 22323021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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