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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                       <---------ANAC55(2)
                                                   <---------ARR11(3)
                                                   --------->ARR11(3)
                                                  --------->YAB1
                                                 --------->ICU4      --------->At4g35610
                                                 <---------YAB1      <---------At4g35610
                                               --------->YAB1        <---------ANAC46
                               ------->TEIL    <---------ICU4     ----------->HVH21
                <---------ANAC58            --------->YAB1      <---------bZIP60(2)
                <---------ANAC58         --------->HSFB2a(2)    --------->bZIP60(1)         --------
              <---------ARR11(3)         <---------HSFB2a(2)    <---------bZIP60(1)     --------->ETT(2)
<------ZmHOX2a(1)    <-----------GT1    ------>ZmHOX2a(2)       <---------O2            <---------ETT(2)
-------->ZAT18--------->ARR11(3)      --------->ARR11(3)      <---------ZAT14         --------->ZAT14
 
agaggactggtgaagaagagcttgttactctatgaatctttgatctagaatcatgatcatgtgagtgatgtgacctgaacaaatccaactgtagaccaaa  22312200
                                                                      --------->ATHB12
                             <-----------GT1                        <--------P
                       <---------TOE2(3)                            <---------WOX13(1)
                      ---------->DOF2                             <---------MYB46(3)
                 <---------GLK1(2)                             --------->YAB1
                 --------->ARR14(2)                    <-------TEIL<-------GAMYB           ------->TEIL
                 <---------ARR14(2)                   --------->CCA1(2)                 --------->ANAC55(2)
->AtMYB61   ----------->RAV1(1)                <---------ZAT6--------->GLK1(2)          <---------ANAC55(2)
 
acttcttcatcgatacaacagatactaaagtttcacatgtctcagaagtagtcatagatacaacaatcttggttgatttgtatattcgattatgtacttc  22312300
                                                                         <---------YAB1
                                                                     <---------AHL20(2)
                                                                --------->AHL20(2)
                                                                <---------AHL20(1)
                                                           --------->AHL20(2)
                                                           <---------AHL20(2)
            <-----------------AGL3                         <---------AHL20(1)
            ========================================================================================
     --------->ATHB12                                      --------->AHL20(1)                <------
    --------->AHL20(2)                                    <---------AHL20(2)          --------->ATHB51
    <---------AHL20(2)                        <---------AHL20(2)<---------AHL20(2)    <---------ICU4
   <---------WOX13(1)  <------ZmHOX2a(2)<----------DOF2   --------->AHL20(2)      <-------TEIL
 
ggtttgatttattgaactaaaattggatcagtccaaaattgttctttatgaaattgactaattttattttatttttttgattaagttcataatttgattt  22312400
                                      --------->TOE1(3)
                             <---------ICU4                                                        <
                            --------->ICU4                                                         <
                          --------->YAB1                                                          --
                     <-------GAMYB    --------->TOE2(3)                                     ------>MYB46(1)
                --------->ZAT14    <-----------GT1                             <------NtERF2------>MYB83
             <---------At5g28300<---------ICU4    -------->P                  <---------LBD16    <--
            <-----------GT1 <---------YAB1  --------->ZAT18            <---------YAB1       --------
=========MADS_MADS  <-----------RAV1(1)     <---------ZAT18           <---------ARR11(3)  <---------MYB59
---------AGL15  <---------ZAT14<---------YAB1--------->ZAT6           --------->ARR11(3)  --------->AtMYB61
 
ttagagtaatccaatttactgttctgttgtcatcattcttaccttagaacactaaccatgttcaattactcaatatcatggcccggttcaaaaccaaacc  22312500
                                                                           <---------AHL20(2)
---------WRKY12                               ---------->DOF2             --------->YAB1
---------WRKY38(1)                         --------->YAB1        --------->YAB1
------->WRKY18(1)            <---------AHL20(2)                 <---------YAB1
---------HVH21 --------->MYB52(1)         ----------->TBP     <---------CCA1(2)   <----------DOF2
->MYB52(1)   <---------MYB52(2) <------------CBF      --------->REM1(1)  ----------->TBP
 
ggtcaatggtagaacaactaatgggctgatataaaaattgggcctataaaaaagcctacaactgtatatcataactataaaaatgctttattttcgaagc  22312600
                                                               <---------ZAT2
                                                               --------->At4g35610
                                                               --------->ZAT2
                                                          --------->ATERF1(1)
                                                          --------->RAP2.3(1)
                                                          <---------LBD16
                                                          <------NtERF2
                                                        <---------ATERF1(2)
                                                        --------->RAP2.3(2)
                                                        --------->DEAR3(1)
                                                        <---------DEAR3(1)
                                                       --------->DEAR4(2)
                                                       --------->RRTF1(1)
                                                       --------->ORA47(2)
                                                       --------->ATERF1(1)
                                                       --------->ERF1
                                                       --------->RAP2.3(1)
                                                     --------->ANAC46
                                                     --------->ANAC58
                                               <-----------HVH21
                                              --------->DEAR3(1)
                                           ------->GAMYB--------->RAP2.3(3)
                                           --------->AtMYB61   <---------At4g35610
                                           <---------ALFIN1   --------->ARR14(2)
                                          <---------ABI4(2)--------->DEAR3(1)
                                          <---------MYB52(2)  <---------ARR14(2)
                                          --------->MYB46(3) <------NtERF2
                                          <---------MYB55(2)--------->LBD16
                                         -------->P  --------->ANAC58                   ------->GAMYB
          <---------AtMYB61            --------->MYB46(3)------>NtERF2               ----------->RAV1(1)
        *TSS                          --------->At4g35610--------->ABI4(1)        <------ZmHOX2a(1)
    <---------TOE2(3)                 <---------At4g35610<---------ATERF1(1)   <---------ICU4
    <---------TOE1(3)             <---------REM1(1)  ------->GAMYB      <---------ARR14(2)
    --------->MYB59            <---------ZAT6 --------->DREB2C(2)       --------->ARR14(2)
 
gaaagtttaggttttggtttttttgtccgtcgtagtgatgcagcaaccaccgtcaaacgccgccggagctggacagataccatcaggacaacagcatttg  22312700
                                                 ----------->RAV1(1)
                                                 <---------ATERF1(1)
                                                 ------>NtERF2
                                                 <---------RAP2.3(1)
                                                <---------DEAR3(1)
                                                --------->PCF2
                                                <---------TCP16(1)
                                                --------->RAP2.3(2)
                                                --------->DEAR3(1)
                                                --------->RAP2.3(3)
                                                --------->RRTF1(3)
                                               --------->ERF1
                                               --------->RRTF1(1)
                                               --------->RAP2.3(1)
                                               --------->ORA47(2)
                               <---------At4g35610
                             ==========================RAV
                             <-----------RAV1(2)--------->RRTF1(2)
                            <---------At4g35610--------->RAP2.6(1)
                           ----------->RAV1(1) --------->ATERF1(1)
                         --------->ZAT2        <------NtERF2
                         <---------At4g35610  ------>NtERF2
                        =================RAV  <---------RRTF1(1)
                        ----------->RAV1(1)   <---------ATERF1(1)
                      <---------At4g35610     <---------DEAR4(2)
                      --------->At4g35610     <---------ERF1
                      --------->ZAT2          <---------ORA47(2)
                     ----------->RAV1(1)      <---------RAP2.3(1)
                     ====================RAV <---------DEAR3(1)                                 ----
                   <---------At4g35610       <---------RAP2.3(2)                               <----
                   --------->At4g35610       <---------RAP2.3(3)                              ------
                   --------->ZAT2            --------->ANAC46                                 <-----
                  =======================RAV <---------RRTF1(2)                               <-----
                --------->ZAT2 --------->At4g35610         <---------WRKY38(1)             ---------
                --------->At4g35610          <---------RRTF1(3)                           <---------LBD16
                <---------At4g35610        <-----------RAV1(1)                   ------>ZmHOX2a(2)
               ----------->RAV1(1)   --------->At4g35610  --------->WRKY18(1)    ===================HOX2a_HOX2a
             --------->At4g35610     <---------At4g35610 <--------ZAP1         <---------AGP1<------ZmHOX2a(1)
             <---------At4g35610  <-------TEIL<---------RAP2.6(1)              --------->ARR11(3)
            ------->GAMYB--------->At4g35610--------->At4g35610      --------->SPL7    --------->GLK1(2)
           --------->MYB46(3)================================RAV     --------->ZAT14   --------->ARR14(2)
         ================================RAV<---------LBD16<---------WRKY12   <---------CCA1(2)-----
         ----------->RAV1(1)--------->At4g35610------>NtERF2         <---------ZAT14   <---------ARR14(2)
   <---------YAB1 ----------->RAV1(1)<-------GAMYB<------NtERF2  <---------ICU4<---------ARR11(3)  <
 --------->YAB1==========================RAV<---------At4g35610--------->TOE2(3)<---------GLK1(1) --
 
tggatgatgatgcaacagcagcagcagcagcagcagatgcagttgtctgcggcgccactaggtcaacatcagtacggtattggatctcagaatccaggat  22312800
-->ZmHOX2a(2)                                                                                    ---
--ZmHOX2a(2)                                                                                     <--
--->ARR14(2)                                                                                     <--
----ARR11(3)                                                                                   <----
----ARR14(2)                                                                        <---------ANAC46
>LBD16                                                                <----------DOF2  ----------->GT1
---->ARR14(1)           ------>ZmHOX2a(2)                     <---------YAB1        <---------ANAC58
---------MYB52(1)     --------->ARR14(2)                    <---------ICU4          <---------ANAC58
------->At4g35610     <---------ARR14(2)                 --------->REM1(1)xxxxxxxxxxxxxxxx>smallRNA(s)
 
ccgctagcgatgttaagtcgttgtggatcggagacttgcagcaatggatggacgagaactacatcatgagcgtctttgctcagtctggcgaggtaatttt  22312900
                                                                                                <---
                                                                                                <---
<---------WRKY18(1)                                                   <----------DOF2           <---
------>ANAC55(2)                                            <---------ANAC55(2)   --------->ARR11(3)
-------ANAC58                        <---------ANAC58       --------->ANAC55(2)   <---------ARR11(3)
-------ANAC58                   <----------DOF2        --------->ATHB12        --------->AHL20(2)
-------GT1--------->YAB1------->TEIL <---------ANAC58<---------WOX13(1)        <---------AHL20(2)  <
 
acttgactgtttatcaaaatcgagatgaacatagtcttttgcttatcatgtagaagattgattaagtattgttctttgcaatataaatcttcatttttta  22313000
                                                                      --------->O2
                                   --------->ANAC46                   --------->TGA1a
                                 <-----------RAV1(2)                  <---------TGA1a
                            <---------MYB46(3)                        <---------O2
                         <------MYB83                               --------->MYB52(1)
                         <------MYB46(1)--------->REM1(1)          ----------->TGA1
                         <---------ANAC46                          ----------->HVH21
 ----------->GT1        --------->MYB111(2)              --------->YAB1
 --------->MYB52(2)     <---------AtMYB61                ----------->GT1     --------->GLK1(2)
------TOE2(3)           --------->MYB46(2)      ---------->DOF2  <---------At4g35610           -----
------YAB1              <---------MYB46(3)      ================================bZIP_DOF      <-----
------TOE1(3)           --------->MYB111(1)  --------->At4g35610 --------->At4g35610     <---------TOE2(3)
--------P               --------->MYB55(2)   <---------At4g35610 --------->ZAT2    <---------TOE1(3)
 
tggttagtgaatacttggtgtttttgtttggtggtttcaggctacatcagctaaagtcattcgtaataagctgacgggacaatctgaaggttatggattc  22313100
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AGI:  At5g54890.1   
Description:  Identical to CRS2-associated factor 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9FFU1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38974.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890)
Range:  from: 22310551    to: 22312370    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At5g54900.1   
Description:  ATRBP45A (RNA-BINDING PROTEIN 45A); RNA binding. similar to ATRBP45C, RNA binding [Arabidopsis thaliana] (TAIR:AT4G27000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38968.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 22312609    to: 22315572    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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