Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------HSFC1(2)         --------->HSFC1(2)                                                                        <-        ------->TEIL                                                                       <--------- ----->TGA2(1)                                                          <---------------AtSPL8 ------ ------TGA2(1)                                                          --------------->AtSPL8 <----- ----->bZIP60(1)                                                        <---------ICU4    <---------ANAC46 ------bZIP60(1)       <---------MYB52(1) ---------->DOF2              --------->ICU4   <---------ZAT14 ---->HVH21 <-------TEIL           <---------ZAT18                ----------->GT1     <---------GLK1(1)   catcacaacgaagcttcatttttctgttattttctagcgacctctcaagcggaacaacttctgaagaagagaaattagtactaacaagagttctgtgaga  22055100                                                 --------->ANAC55(2)                                                 <---------ANAC58               --------->TOE2(3)                                           <---------TOE1(3)                    <-----------TGA1                                     --------------->AGL15                     --------->ANAC46                                     <----------DOF2                          <---------TOE2(3) --------------AtSPL8         <---------ANAC58   <---------ANAC46            --------->MYB52(1) --HVH21  --------->GLK1(2)   <---------ANAC58   <---------ANAC58            <-----------GT1 --->At4g35610              <-----------GT1<---------TOE2(3)                 <---------DOF5.7(2) ----At4g35610     <---------ZAT6   <-----------------AGL3<---------YAB1<---------YAB1   tgatgtacagagaattttgtagtgtttttttttcttgctctttttaaggttacgttgttgatgaatgaggcaatatgattaacgtcagtaagaagtctaa  22055200                                 <---------AHL20(2)                             <--------ATHB1              --------->ANAC58  --------->AHL20(2)              --------->ANAC58  <---------AHL20(2)              ----------->GT1<---------ICU4           ------>MYB83      --------->AHL20(2)                            --------->GLK1(2)           ------>MYB46(1)   <---------AHL20(2)                 --------->AHL20(2)           -------->P        --------->ATHB51                   --------->AHL20(1)          <--------         ------->GAMYB      --------->ICU4                      <---------AHL20(2)  <---------TOE2(3)        <---------MYB52(2)  <---------ATHB51                   --------->AHL20(2)   <---------YAB1        --------->MYB46(3)  <---------ATHB12                   <---------AHL20(2) <---------AHL20(2) <---------ZAT14   <---------ANAC58           <-----------GT1  <---------ATHB12   --------->AHL20(2) --------->ZAT14   <---------ANAC58   --------->TOE2(3)        <---------ATHB51  --------->AHL20(2)   aactgtagtaaccaacaagttacttagccaataatttaatccctaattttacatttgaaattcaaataatttgggacaatctaattaatattggaaattc  22055300      <-----------GT1     --------->AHL20(2)                                      <---------YAB1         --------------->AGL15    <---------AHL20(2)                                      --------->TOE2(3)       <---------------AGL15 --------->ATHB51                                      --------->AHL20(2) ----------->GT1 --------->AHL20(2)   <-----------GT1        <------ZmHOX2a(1)   --------->AHL20(2)--------->TOE2(3) -GLK1(1)      <-----------GT1   --------->YAB1   --------->AHL20(2)  ---------->DOF2          ------   gaataatttaactaatattacattttacatctaaatcatagtttataggaaaaaaaataaaacattataaaataaagagtaaaaaacttaaatgggcaac  22055400                                                               <------------CBF                                                              --------->ATHB12                                                             <---------YAB1     --------->At4g35610   ----------->GT1     --------->CCA1(2)         ---------->DOF2<---------WOX13(1) ---------->DOF2  ---------->DOF2   --------->ARR11(3)       ------>ZmHOX2a(1) <---------ARR11(3)  *TSS -->P      ----------->GT1          <---------ARR11(3)     ----------------->AGL1               <----   cagaaaagaaatatggataaaaaagagatggaattagagatacttcaaatccaaagctgtttcctgattggctaatcccaacatctcactctctatctat  22055500                                                                                    ---------->DOF2                                                                                   ------>MYB46(1)                                                                                   ------>MYB83                                                                                   --------->MYB52(1)                  --------->O2                   ---------->DOF2     --------->AtMYB61         <---------GLK1(2)                    --------->TOE2(3)--------->LBD16   --------->MYB46(3)   <---------CCA1(2)                         --------->YAB1  ----------->RAV1(2) <---------MYB46(2) -----CCA1(2)   <---------ALFIN1  --------->ANAC46     ---------->DOF2          --------->ANAC46   atcccatctctgattctcccacctctcttctcatccacaaaatactaacataaaagtcaaagtccctgagaccaatactttcaccaaacagcaaaacaag  22055600                   ---------->DOF2                                                -------->P             --------->ANAC58                                               <---------ZAT14             --------->ANAC58                                               --------->ZAT14      <---        --------->ZAT6                                                --------->ANAC58           <---      ----------->RAV1(1)                                             --------->ANAC58   --------->MYB46(3)     --------->MYB46(3) ---------->DOF2                          --------->At4g35610   ----------->RAV1(1)   aagaacaacaacactaagcaaaaaagaaaagctcaagccgagagagacaatggcatcaacattcacgagctcaagcagtgttcttaccccaacaacattc  22055700                                                                <---------ZAT18                                                                --------->ZAT18                                                                <---------ZAT14                                                                --------->ZAT14                                                       ------>ZmHOX2a(2)                                                      <---------GLK1(1)                                                      --------->GLK1(1)                                                      <------ZmHOX2a(2)                                                     --------->ARR14(2)                                                     <---------ARR11(3)                                                     --------->ARR11(3)                                                     <---------ARR14(2)         ---------->DOF2   ------->GAMYB             <-----------ARR10 ------ANAC58           <-----------GT1             <---------CCA1(2) ------ANAC58        <----------DOF2             <---------LBD16<-------TEIL      <----------DOF2  <-   cttggccagactaaagcctcaagctttaacccccttcgtgatgttgtctctctcggatctcccaagtacactatggtctgttttctttttggtcttaatc  22055800                                                                                              -------                                                                                             --------                                                  ----------->GT1                          <---------At4g35610                                                  --------->ANAC55(2)                      --------->At4g35610                                                  --------->ANAC58              <----------DOF2                                                  --------->ANAC58             ------>ZmHOX2a(2)                                                  --------->ANAC46            <---------YAB1<--------            --------->ALFIN1                      <---------ANAC55(2)        --------->ARR11(3)<<<<<<       ---------->DOF2                            --------->ANAC55(1)        <---------ARR11(3)xxxxxx ----------TGA1      <----------DOF2         <----------DOF2     ----------->HVH21        ------->TEIL   tcgtcatattaaaggtgtttcatctttcttcttgagtttgtgtctgactttcacgtaaaatgtctatgtgaagggaaatgatctttggtatggacctgac  22055900                                                                     --------->ATHB12                                                                     <---------MYB46(3)                                                                    <---------YAB1                                                                    <---------TOE1(3)                                                           xxxxxxxxxxxxxxxx>smallRNA(s)      <-------                                                          <---------LBD16       --------->DEAR3(1)                                                     --------->ARR14(2)       <---------ATERF1(1)----                                                     <---------GLK1(1)   <------MYB46(1)     --------  --------->ZAT14                                    --------->GLK1(1)   <------MYB83       ---------  --------->ZAT18                                    <---------ARR14(2)<--------P------>NtERF2 ------  <---------ZAT14      <---------ANAC58         --------->LBD16     <---------TOE2(3)      <---------LBD16 -->MYB52(1)           <---------ANAC58       <---------LBD16    <---------ATHB51--------->ABI4(1) -- --->HVH21        <---------DAG2             --------->MYB52(1)  --------->ICU4--------->DEAR3(2)<--- -MYB59           <----------DOF2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------DEAR3(2) <GRF7       <------ZmHOX2a(1)             ----------->HVH21   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(s2)       <-----------GT1   ----------->RAV1(2) <---------ALFIN1--------   agagtgaagtacttaggacccttttccgttcaaactccgtcttacctcaccggagaattccctggcgattatggttgggacaccgccggtttatccgcag  22056000  Previous    Next  AGI:  At5g54260.1    Description:  MRE11 (MEIOTIC RECOMBINATION 11); protein serine/threonine phosphatase. Identical to Double-strand break repair protein MRE11 (MRE11) [Arabidopsis Thaliana] (GB:Q9XGM2); similar to Mre11A [Zea mays] (GB:ABQ59303.1); similar to meiotic recombination 11 [Triticum monococcum] (GB:CAJ15648.1); similar to putative MRE11 [Oryza sativa] (GB:AAX24126.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843); contains InterPro domain Mre11, DNA-binding; (InterPro:IPR007281); contains InterPro domain DNA repair exonuclease; (InterPro:IPR003701) Range:  from: 22049295    to: 22055217    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g54270.1    Description:  LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3). similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05100.1); similar to LHCII type III chlorophyll a/b binding protein [Vigna radiata] (GB:AAD27877.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 22055499    to: 22056794    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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