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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                     --------->ARR14(2)
                     <---------ARR14(2)
                     <---------ZAT14
                     --------->ZAT14
               <------ZmHOX2a(2)                                                   --------->ATHB12
               --------->CCA1(2)                                                  --------->ICU4
              <---------ARR11(3)                                                <---------ICU4
              --------->ARR11(3)                                               --------->ICU4
              --------->ARR14(2)              ----------->RAV1(2)            --------->YAB1
              <---------ARR14(2)         --------------->AtSPL8    ------->GAMYB--------->YAB1
              --------->AGP1    <---------ETT(2)       <---------At4g35610 <---------At5g28300
    <---------ANAC46 <---------ZAT18   <-----------HVH21     ------>ZmHOX2a(2) <---------YAB1
-->ANAC46    --------->GLK1(1)  --------->ETT(2)    <-------TEIL <---------REM1(2)<---------YAB1
 
catcgtttcgcatacgagatccagtatactctcgatcgacattgtcagtacctgatacatctgatctcaacacacatttaccatgatgattcgaagtcaa  22013900
                                                                              --------->LBD16
                                                                            <---------LBD16
                                                                            ------>ZmHOX2a(2)
                                                                           --------->CCA1(2)
                                                                           --------->ARR14(1)
                                                                           <------ZmHOX2a(2)
                                                                          --------->ARR11(3)
                                                                          --------->ARR11(1)
                                                                          --------->ARR14(2)
                                                         ------->GAMYB    <---------ARR14(2)
                                                   --------->ANAC58       --------->AGP1
                      --------->CCA1(2)            <---------ANAC55(2)    <---------AGP1
              <------ZmHOX2a(2)                    --------->ANAC55(2)  ----------->ARR10
             <---------ARR14(2)                    --------->ANAC58    <--------P
             --------->AGP1                      <<<<<<<ZML2        <---------AtMYB61
             --------->ARR14(2)               <---------HSFB2a(2)  <------NtERF2
          --------->MYB46(3)                  <---------HSFC1(1)  --------->LBD16
          --------->DEAR3(2)                  --------->HSFB2a(2)--------->DEAR3(1)
        <---------ARR14(2)                    --------->HSFC1(1)<---------LBD16
        --------->ARR14(2)              ------>NtERF2 --------->MYB52(1)<-------TEIL             ---
 
aacatcagaaggaaccgatctagagaaatgagaactgtttctccgacttctagaacgtaactgactcgccggaggtagatccggctcattactaagtccc  22014000
                                                                                                  <-
                                                                                      --------->MYB52(1)
                                                                                     --------->ARR14(2)
                                                                                     <---------ARR14(2)
                                   <-------TEIL                                     ================
                                  --------->GLK1(2)                                 <------ZmHOX2a(1)
                                 --------->ARR14(2)                                 ================
                          ------>NtERF2                                             ================
                          ----------->RAV1(1)         <---------ZAT2               --------->ANAC58
                          <-----------HVH21           --------->At4g35610          --------->ANAC46<
          ============================RAV             <---------At4g35610     ======================
          ----------->RAV1(2)    <---------GLK1(2)    --------->ZAT2          ======================
  --------->ANAC55(1)    --------->ANAC46     <---------GLK1(1)               ======================
  --------->ANAC58       <---------ETT(1)     --------->GLK1(1)               <------ZmHOX2a(1)  ---
  --------->ANAC46       ----------->HVH21   <---------GLK1(2)            --------->TOE2(2)      <--
  --------->ANAC58 <---------CCA1(2)         --------->ARR14(2)    ----------->GT1 --------->ANAC58-
------>ANAC46 <---------GLK1(2)  <---------ARR14(2) --------->ANAC46      --------->TOE1(2)    <----
 
aaaccacgcaataacctgattcgtctctccgacacagattcaggctcagatttccacagctcgaacccagaggtaaacataggaacaggaaacggagtcg  22014100
         <---------ARR14(2)
         --------->ARR14(2)
      ------>ZmHOX2a(2)
    <---------ARR14(2)
-----ZmHOX2a(2)
=============HOX2a_HOX2a
======HOX2a_HOX2a
=====HOX2a_HOX2a
---------ANAC46
=====HOX2a_HOX2a                                                               <------ZmHOX2a(2)
======HOX2a_HOX2a                                                             --------->ARR11(3)
=============HOX2a_HOX2a                                                      <---------ARR11(3)
------>ARR14(2)                                                          --------->ZAT18
-------ARR14(2)                                                          --------->ZAT14
----->ZmHOX2a(2)        <-----------HVH21                                <---------ZAT14
-----DEAR3(2)    <---------HSFB2a(1)  --------->YAB1                     <---------ZAT18
 
gatcgtggatcgaatcggaaacattcgggtcagagtcgtaatcagagtttgaagttgaacaagagcaagacgatagtacacgatctagagactcatagaa  22014200
                                                                                   --------->YAB1
                                                                                   <---------ICU4
      --------->ICU4                                           <---------ANAC58   <---------YAB1
     --------------------->WRI1                           <---------bZIP60(2)   <---------ICU4   <--
   <---------YAB1             ---------->ID1     <-----------ARR10           --------->YAB1    <----
  <-----------TGA1        <----------DOF2 --------->At4g35610  <---------ANAC58 --------->YAB1 -----
 --------->YAB1   <<<<<<<<<TBF1    <----------DOF2   --------->MYB52(1)     <-------TEIL      ------
 
acaatcgtcattgttatcttcttcttctactttgtcttctttcttagcttcaaatctaacgacgttgcttcgtcttcgattcatcatcatcatcttcatc  22014300
                                                             ----------->GT1
                                                             <------MYB83
                                                             <------MYB46(1)
                                                           <--------P
                                                          <-------GAMYB
    --------->ANAC58<---------At4g35610                  <---------MYB46(3)             <---------HSFC1(1)
    --------->ANAC58--------->At4g35610                  --------->MYB55(2)             --------->HSFC1(1)
-------YAB1      <---------YAB1              --------->At4g35610                        <---------HSFB2a(2)
-----ICU4      --------->YAB1                <---------At4g35610                        --------->HSFB2a(2)
---->YAB1     <---------YAB1        ---------->ID1    <----------DOF2                 <-------TEIL
--->ICU4---------->DOF2         <----------DOF2 --------->ZAT14              <-----------HVH21  <---
 
atgactgaagcaaaagtattatcatctgaaaatgactttgtctctctctgctacagtctttggttggagaaatttttgactgtgagaggttcgagaagag  22014400
                                                               ==========================HOX2a_HOX2a
                                                               ------>ZmHOX2a(2)
                                                              <------ZmHOX2a(2)
                                                              ===========================HOX2a_HOX2a
                                                             --------->ARR14(2)                -----
                                        <-------GAMYB ===============HOX2a_HOX2a       <----------ID1
                --------->YAB1         <---------MYB46(3)    <---------ARR14(2)        ----------->GT1
         <---------ANAC55(2)          <---------TOE2(3) <-----------HVH21            ----------->GT1
  <---------TOE2(3)                <---------ATHB12   ================HOX2a_HOX2a  ---------->DOF2
---ZmHOX2a(1) --------->GLK1(2)------------>CBF       <------ZmHOX2a(1)           <------ZmHOX2a(1)
 
gaattagggattacgagaatcaaaaacgaagttcgccaatggaggttgagtaagagaggagtcagatcggagattaatggagagaggaaagagaaaaata  22014500
                                                              --------->ANAC58
                                                              --------->ANAC58
                                                           --------->ZAT2<---------YAB1
                                                           <---------ZAT2<---------AHL20(2)
                                                           <---------At4g35610         <---------ARR11(3)
                                                --------->ALFIN1        --------->AHL20(2)
                                            <------ZmHOX2a(1) --------->ANAC46    --------->AHL20(2)
                                --------->LBD16<------ZmHOX2a(1)        <---------AHL20(2)
  <-----------GT1<---------AHL20(2)     <------ZmHOX2a(1)  --------->At4g35610    ------------>CBF
------>GT1   <---------ZAT6   <---------ZAT14--------->ALFIN1--------->ZAT18 ------------>CBF
 
gaaataaactgttttagtgtttaatgtccagactccagagagaggaaggaggagggagagagagctcgcaacgattttaattcaattcaatatgtttttt  22014600
                                                --------->TOE2(3)
                                           <---------YAB1
                                         <--------HAHB4
                                         <---------ICU4               --------->AHL20(1)
                                         -------->ATHB1               --------->AHL20(2)
                                         <---------AHL20(2)           <---------AHL20(2)
                      --------->GLK1(2)  -------->HAHB4               <---------AHL20(1)
                     --------->YAB1      --------->YAB1              <---------AHL20(2)
                    <---------ATHB12    --------->ICU4           --------->AHL20(2)   --------->AHL20(2)
                <---------ATHB12        <---------ATHB51         <---------AHL20(2)--------->WOX13(1)
            --------->AHL20(2)          <---------YAB1 <-----------TGA1    <---------YAB1  ---------
            <---------AHL20(2)      <---------MYB52(1)--------->YAB1 --------->AHL20(2)---------->DOF2
      <---------AHL20(2)   <---------YAB1--------->ATHB51     ----------->GT1    <---------YAB1
 
tttgttcatttttttttaaatcaataatctattatttctgttaattattaatctaaatcgtcatttagttaaataaatttgattatcaattaaagcgaaa  22014700
                                                      ----------->GT1                              <
                         <---------AHL20(2)          --------->DAG2                             ----
                        --------->AHL20(2)          <---------ZAT14                          <------
                <-----------GT1                     ---------->DOF2                         <-------
-->GT1       ----------->GT1              <---------YAB1--------->AHL20(2)             <----------DOF2
 
atttagaatcgaaatgtagttacaaaattttatgtaagtaatagtataatttgagtaaagtaaatgaaattgatatatatgtagttagggcttttaatga  22014800
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AGI:  At5g54200.1   
Description:  WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15470.1); similar to OSJNBa0074L08.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE02139.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO39239.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:  from: 22010575    to: 22014302    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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