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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                    --------->GLK1(1)
         --------->DOF5.7(2)
       <---------ANAC58                                                             <---------DAG2
       <---------ANAC58             --------->DAG2                  --------->GLK1(2)
       <---------ANAC46            ---------->DOF2                 <---------GLK1(2)<----------DOF2
      <---------TOE2(2)     ----------->GT1                        --------->ARR14(2)
      <---------TOE1(2)   ---------->DOF2                          <---------ARR14(2)            <--
----------DOF2      <---------GLK1(1)             ---------->DOF2 <---------At4g35610   <-----------GT1
 
ttcttttcttacgtttactacagatttcagaaagaaaaaaaagtgtttgaagcaaaagagattaatggcagattcttgagtcattaacttttttctaatt  21772900
         ------>ZmHOX2a(2)
        <<<<<<<<<GATA-2
        <------ZmHOX2a(2)
        <<<<<<<<<GATA-3
        <---------GLK1(1)                     ----------->GT1
        <<<<<<<<<GATA-4               <---------ICU4
        <<<<<<<<<GATA-1              <---------YAB1
       <---------AGP1            <-----------TGA1
       --------->ARR11(3)       <---------ANAC46             <---------ZAT18
       <---------ARR11(3)       <---------ANAC58        <---------GLK1(2)--------->YAB1
      <---------CCA1(2)         <---------ANAC58        --------->ARR11(3)
--------->AHL20(2)          <---------ANAC58 <---------TOE2(3)         <---------AHL20(2)
<---------AHL20(2)          <---------ANAC58 <---------TOE1(3) ------->TEIL                <--------
--------DOF2     --------->TOE1(2)   --------->ICU4   --------->ICU4   --------->AHL20(2)  <--------
 
cttttaattagatctctgaacataagagataacttgcgtcattattctatggttataaagattatgcacttgattaaaataatctctagttttccttttt  21773000
                                                              --------->ALFIN1
                                                      <---------ANAC58
                                                      <---------ANAC58
                                      <<<<<<<<<TBF1 <---------YAB1     ----------->GT1
                   <----------DOF2 <<<<<<<<<TBF1  --------->YAB1       --------->ANAC58
                  <------------------------ANAC81 -------->HAHB4       --------->ANAC58       <-----
       --------->ANAC58         <<<<<<<<<TBF1     <---------ICU4   --------->ANAC58          -------
-DAG2  --------->ANAC46      <<<<<<<<<TBF1       --------->ICU4    --------->ANAC58     --------->AHL20(2)
--DOF2 --------->ANAC58   <<<<<<<<<TBF1     <---------At4g35610  ---------->DOF2      <----------DOF2
 
ctcatttgctaagcaactgtttctttttcttcttcttcttcttcttcagataattatgcttgggagtggaaagcaagaaaaattctaaactttatataaa  21773100
                                                                                              <-----
                                                                                              ------
                                                                                              ------
                                                                                         ---------->DOF2
                                                                                    <---------ICU4
                                                                                    --------->YAB1
                                                                                    <--------HAHB4
                                                                                    --------->ATHB51
                                                                                    <---------AHL20(2)
                                                                                    -------->HAHB4
                                                                                    -------->ATHB1
                       --------------->AtSPL8                          <------------CBF <---------AHL20(2)
               ======================================================MADS_MADS     <---------YAB1
     --------->GLK1(2) <---------------AtSPL8        --------->TOE2(3)--------->ATHB12<---------YAB1
  --------->LBD16  ---------->DOF2          <-----------TGA1         <---------YAB1--------->ICU4
 <---------HSFB2a(2)   --------------->AtSPL3        --------------->AGL15      --------->AHL20(2)
 --------->HSFB2a(2)--------->DAG2  <-----------GT1 ----------------->AG        <---------AHL20(2)
<---------LBD16------>ZmHOX2a(2) <---------AHL20(2) ----------------->AGL1     --------->AHL20(2)
----AHL20(2)   ----------------->AGL3   ------>ZmHOX2a(1)---------->DOF2<---------WOX13(1)   <------
-->AHL20(2)    ================================HOX2a_HOX2a        <----------DOF2  <---------ATHB51
 
attcccagaatcaattgatccaaaaagaggtaccatttttttcctctcgtcattttccataaaagtaagcttttgattgatatttaattattaaaagaat  21773200
                                                     <---------ARR11(3)
 <----------DOF2                                     --------->ARR11(3)
----ARR14(2)                              ----------->GT1
--->ARR14(2)                            <------------CBF
--->GLK1(2)                             --------->ZAT14        *TSS         <---------MYB52(1)     -
---GLK1(2)                        <-----------GT1---------->DOF2 >>>>>>>>>TBF1         <------------
 
ctgtcttttgggtttttgttttgacaaatttttgttttttcagtattgtcaaaaaagataatcaagaagaagaaactctgtttttttgttctgttcttgg  21773300
                                                                           --------->ANAC58
                                                                           --------->ANAC46
               --------->ICU4                                              --------->ANAC58
               <---------YAB1                                            --------->CCA1(2)
             --------->YAB1                                     <---------bZIP60(2)         --------
       <------ZmHOX2a(1)                     ---------->DOF2    <---------ANAC46       <------------
-------->AHL20(2)               --------->ANAC58                <---------ANAC58       <------ZmHOX2a(1)
---AGL15    <---------YAB1      --------->ANAC58                <---------ANAC58   --------->TOE1(2)
 
aaaaaaatgaggagtatgatgatggagagagagggaaggaatgagatagaaagagaagtaatagatgacttggaagagacgcaaaacgaaggagatgatt  21773400
                                                         <---------ICU4
                                                         -------->ATHB1
                                      <------ZmHOX2a(1)  --------->YAB1
                                   <---------At4g35610   --------->ATHB12                          -
                               <-----------HVH21        --------->ICU4 --------->ZAT14             -
                          <---------ATHB12<-----------RAV1(1)----------->GT1                     <--
->ATHB12           <----------ID1  --------->At4g35610  <---------ATHB12         ------>ZmHOX2a(2) -
---------WRI1--------->AtLEC2 <----------DOF2           <---------YAB1 <---------ZAT14   ------->TEIL
 
tcaagtcaatacctccatggaaggaacaaatcactttcagaggaattgttgcaagtttaatcattggtataatctacagtgtgatcgtgatgaaactaaa  21773500
                                                                                           <------NtERF2
                                                                                    ---------->DOF2
                                                                               --------->WRKY38(1)
                                                                               --------->WRKY45
           <------MYB46(1)           <---------ALFIN1                          --------->WRKY12
          --------->MYB59        <---------ZAT14                         ------>MYB83     --------->LBD16
          <---------AtMYB61      --------->At4g35610            --------->ZAT2 <---------ETT(2)-----
 --------->MYB46(3)              --------->ZAT14<----------DOF2 --------->At4g35610--------->AtMYB61
-------->MYB52(1)    <---------MYB59<---------At4g35610        --------->GLK1(2)<---------WRKY18(1)
----->MYB46(1)       --------->TOE1(3)  <---------DAG2    ------>ZmHOX2a(1)  --------->At4g35610
-------MYB59         --------->TOE2(3)  <----------DOF2  --------->TOE2(3)<---------ZAT2 <---------LBD16
----->MYB83<------MYB83          <---------At4g35610---------->ID1       ------>MYB46(1)<---------LBD16
 
cctaacaacaggtttggtcccaaacctaaatgtctctgcagcacttttagcctttgtcttccttagaagctggaccaagctgttgaccaaagccgggatt  21773600
                                                    --------------->AGL15
                                                   <---------ANAC58
                                                   <---------ANAC46
                                                   <---------ANAC58
                                                <---------MYB52(1)
                                              <-----------RAV1(1)
                                          ------->MYC4
                        <---------ZAT14   ------->MYC2
         --------->ZAT14--------->ZAT14   <-------MYC2                         ----------->GT1
         <---------ZAT14--------->ZAT18   ------->MYC3                         <---------ANAC46
         --------->WRKY38(1)              <-------MYC3              <-------GAMYB
        <---------MYB52(1)            <---------ATHB12  <-----------GT1      <-------TEIL
        --------->DOF5.7(2)  --------->ZAT14  <---------MYB46(3) <---------ZAT14
------>GT1  --------->ANAC46<-----------RAV1(1)<-------GAMYB     --------->ZAT14         <----------
 
gtgactaaaccgttcactaaacaagagaacactgttgtccaaacatgtgctgttgcttgttacagcattgcagttggaggttcagtgaattttgaccagt  21773700
                                                                                 --------------->AtSPL8
                                                                              <------MYB83
                                                                              <------MYB46(1)
                                                                             --------->MYB59
                                                                             <---------AtMYB61
                                                                         <------MYB83
                                                                         <------MYB46(1)
                                                                       <--------P<-------TEIL
                                                                       --------->ALFIN1
                                   --------->ATHB12                   <---------MYB52(1)
                                  <---------YAB1                      ------->PIF5
                                  <------ZmHOX2a(2)                   <-------PIF5
                               <------MYB46(1)                       <---------ZAT2
                               <------MYB83                          <---------At4g35610
  <-----------GT1            <--------P                              --------->ZAT2 <---------CCA1(2)
-GT1                        <-------GAMYB                          <-----------RAV1(2)
 
tgttttgactgtttgatcagtttttgtttggggttggatcattgttttgagctatgtgtttgtgtgatttgcaggtgggtttggttcataccttcttggt  21773800
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AGI:  At5g53550.1   
Description:  YSL3 (YELLOW STRIPE LIKE 3); oligopeptide transporter. Identical to Metal-nicotianamine transporter YSL3 (YSL3) [Arabidopsis Thaliana] (GB:Q2EF88;GB:Q0WVQ4;GB:Q9FJC8); similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G24120.1); similar to YSL7 (YELLOW STRIPE LIKE 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G65730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77891.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABD04075.1); similar to YSL transpo
Range:  from: 21773264    to: 21776143    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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