Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->At4g35610                                               <---------At4g35610                                             --------->ZAT14                <---------LBD16            <---------O2           <-----------GT1                 --------->O2        --------->ARR14(2)      --------->ICU4                <------ZmHOX2a(2)          --------->GLK1(2)      <---------YAB1      --------->MYB52(1) <---------ZAT14   <---------ARR14(2) --------->LBD16<---------At4g35610<---------ARR11(3)         <---------GLK1(2)   <------ZmHOX2a(1) --------LBD16  --------->At4g35610--------->ARR11(3)   --------->DAG2 ----------->GT1--------->CCA1(2)   ctccggtgatgattcaccagcggaacacaaacggcgagatcactcacttcgctgagaaaaattggaatctggattgagaaataaggagagacaagagaag  21660700                <---------YAB1                                          <----------DOF2         <---------TOE2(3)                                           <-----------GT1     ------>MYB46(1)      <---------MYB52(1)                                          <---------ICU4         ------>MYB83     <-------GAMYB                                          ------>ZmHOX2a(2)           *TSS    <---------ANAC46                                      --------->ARR11(3)           <---------MYB59  <---------ZAT18                                         <---------ARR11(3)     --------->WOX13(1)  --------->ZAT18     <---------YAB1                <---------ANAC46 <---------AHL20(2)<---------MYB46(2)   agagtgccgttgagatttatgatttttatcggattagtttttgggatgtcaattttgtgtgatcttcttaattactttctgatcaattaccaaacctagt  21660800                                                                                                -----                                                                                             ------>MYB83                                              <---------AHL20(2)                            <--------                                              --------->AHL20(2)                            ---------                                   <---------AHL20(2)                                       ---------                                   --------->AHL20(2)                                      <---------MYB55(2)                                  --------->AHL20(2)                                       --------->MYB46(3)              <---------YAB1      <---------AHL20(1)                           <-----------HVH21-----           <---------YAB1         <---------AHL20(2)               <----------DOF2      <-----------GT1        <----------DOF2      ------------>CBF--------->AHL20(2)    <---------DAG2    <---------ICU4    <---------GLK1(2)    --------->ZAT6  <---------YAB1 --------->ATHB12      ----------->GT1------>MYB46(1)   ctctctgattcttttgattataggttaactctacaatttaattctcatttatttctactgatttgtaaactttttcgaaactgtcaaatattacccaccg  21660900                                                              ---------->DOF2                                                         <-------GAMYB                                                        --------->MYB55(2)                                                        <---------MYB46(3)    --------->DAG2                                      <---------DEAR3(2)   ---------->DOF2                                     <---------DEAR3(1) ---->At5g28300     <----------DOF2                   <------NtERF2         --------->WRKY18(1) -ALFIN1   ===============================RAV        --------->LBD16    <------ZmHOX2a(1) >ANAC46 <-----------HVH21                      <-----------GT1       --------->ALFIN1  <---------ANAC46 >MYB55(1)<------ZmHOX2a(2)           ---------->ID1--------->ANAC46 <------ZmHOX2a(1)------>NtERF2 ---->LBD16<-----------RAV1(2)----------->RAV1(1)  <---------LBD16 --------->ALFIN1  --------->DEAR3(1)   tgaaaaaaagggatcaggtgttctttactaaacaacatttgttttttttgttacccggcggttgaaaaggaggaggaggtcaagacgacgacgtttaaaa  21661000             <---------ARR14(2)                     <---------ARR11(3)             --------->ARR14(2)                   ----------->ARR10         <----------DOF2         <------NtERF2                        --------->ATHB12             <---------DAG2        <---------RAP2.6(3)                <------------CBF             <-----------GT1        <-----------HVH21                --------->ICU4                 XXXXXXXXXXXXXXXXXXXXX>MIR4221       --------->RAP2.3(3)               <---------YAB1                <-----------GT1       --------->RAP2.6(2)            <---------YAB1--------->ARR11(3) ---------->ID1    <---------AtLEC2       ----------->GT1          -------->P--------->ATHB12            <-----------GT1  <-----------GT1   aaccatgggccgtcaaatactctcgtcaaactcttaccagatgattattgattagatattctctcttccatttttcccctttcgaatttttgcatttcat  21661100                                                                       ---------->DOF2                                                                    --------->ANAC58                                                --------->TGA2(2)   --------->ANAC58         <---------ZAT18                       <-----------TGA1     --------->ANAC46      <---------ANAC58                   --------->GLK1(2)      <----------DOF2      <---------ANAC46                   <---------ARR14(2) --------->ARR14(2)                     <-      <---------ANAC58   <---------CCA1(2)    <---------ANAC58  ------>ZmHOX2a(1)           <--------  <----------DOF2        <---------At4g35610  <---------ANAC58 --------->TOE2(3)         <-----------GT1  ------>ZmHOX2a(1)     *TSS             --------->ARR14(2) <---------ARR14(2)      <---------YAB1 --   catccttttcgtgtgcttcacaacttcatctctctctcgagagaatttgcgtcatcaattcaaatcctttacgcaaagtttcagtttttattcactttct  21661200                                                                                           <---------At4g35610                                                                                           --------->ZAT2                                                                                           --------->At4g35610                                                                                         <------NtERF2                                                                                        <------NtERF2                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                               --------->LBD16                                  --------->YAB1                               ------>NtERF2                 --------->ARR14(2)                                           --------->ANAC58                 <---------ARR14(2)  --------->WOX13(1)                       --------->ANAC58                ------>MYB46(1)   --------->TOE2(3)   <----------DOF2         --------->ANAC46   <---                ------>MYB83     ----------->GT1      <---------DAG2       --------->ARR14(2)    <--- --------ANAC55(2)        ------>ZmHOX2a(2)        --------->ARR11(3)      <---------ARR14(2)<------- --DOF2     >>>>>>>>>>MYB80      <---------YAB1    <---------ARR11(3)  --------->ANAC46--------->RAP2.6(2) ------->ANAC55(2)   ------>ZmHOX2a(1) <---------ATHB12   XXXXXXXXXXXXXXXXXXXX>MIR838 <---------RAP2.6(2)   tacataacccatcaaaccaaatcctcgatcggattatgttaatcaattgctaagagctttttcttctacttcttcgcaatccgccatggccgcagcttta  21661300                                                                                   --------->ANAC46                                                                                   --------->ANAC58                                                                                   --------->DEAR3(1)                                                                                   ------->GAMYB                                                                                   --------->ANAC58                                                                                  --------->MYB46(3)                                                                                 --------->SPL7       <---------ANAC55(2)                                             <---------ALFIN1       --------->ANAC58                                                --------->ANAC46       --------->ANAC58                               <---------ARR11(3)  --------->DEAR3(1)       --------->ANAC46                            <----------DOF2--------->ARR14(2)           ------    <---------ARR14(2)                         <---------GLK1(2)  <---------ARR11(1)    <---------ALFIN1    --------->ARR14(2) <----------DOF2--------------->AGL15       <---------ARR14(2)  ----------->RAV1(1) ------TOE1(3)   <---------ARR14(2)   <---------------AGL15      <---------ARR14(1)--------->RAP2.6(2) ------TOE2(3)   --------->ARR14(2)  <-----------------AGL3    ------->GAMYB    --------->ARR14(2)--- ---DOF2<-----------HVH21         <----------DOF2  <---------DAG2<---------CCA1(2)--------->DEAR3(2)-   aggtcgaatacgtcaagagaaaccgcttctcttacactttctcattttagatactttatcttcaaccgtatccacaccgctcgaaccgccacaagtcctc  21661400                                                                                               ------                                                                                               <-----                                                                                               ------         <---------At5g28300                      ------>ZmHOX2a(1)<---------ANAC58            ------        <-----------GT1                         ----------------->AGL1                         ------       --------->MYB46(3)                       <-----------------AGL1                         ------   --------->ZAT14     --------->At4g35610      <-----------------AG             <------ZmHOX2a(1) >ZmHOX2a(1)       <---------ARR14(2)         <-----------GT1      <---------ANAC46    <------ZmHOX2a(1) --->ZmHOX2a(1)    --------->ARR14(2)     <---------AHL20(2)       <---------ANAC58 <------ZmHOX2a(1) -------------------->WRI1               --------->AHL20(2)      --------->GLK1(2)--------->ALFIN1   ctcactgtaatcaccgttctaaatccgatgagaaattcccctataaaatttcctctcttggaacgagtttcttggataatcgaggaggaggagagagacg  21661500                                                                                        ------>ZmHOX2a(2)                                                                                        =============                                                                                       ==============                                                                                       <------ZmHOX2a(2)                                                                                      <---------ARR11(3)                                                                                      <---------AGP1                                                                                      <-----------ARR10                                                                                      <---------ARR11(1)                                                                                      --------->ARR14(2)                                                                                      --------->AGP1                                                                                      <---------ARR14(2)                                                                                     <---------ARR14(1)                                                                                 -------->P                                                                                 ------>MYB46(1)                                           <------MYB46(1)                       ------>MYB83                                           <------MYB83                          --------->MYB52(1)                                          <---------AtMYB61                     --------->MYB55(1)                                         <--------P                             <---------ALFIN1<----                                    <---------DEAR3(1)             --------->ZAT18<---------LBD16                                 ---------->CDC5    <-------GAMYB<---------ZAT2<---------MYB55(2) --->ANAC55(1)                --------->At4g35610  <-----------RAV1(1)         --------->MYB46(3)---- ----ANAC55(2)     --------->At4g35610  xxxxxxxxxxxxxxxx>smallRNA(se3)       --------->PCF2     <---- --->ANAC58        <---------At4g35610 --------->ALFIN1          <---------At4g35610 <---------CCA1(2) ----->GT1<---------ZAT6--------->At4g35610<---------MYB46(3)    --------->At4g35610--------->LBD16 - --->ANAC55(2)  <---------At4g35610--------->At4g35610           --------->ZAT2<---------ABI4(2)----- --->ANAC58    <-----------RAV1(1) <---------At4g35610  <---------YAB1      --------->GLK1(1)   <----   taattcgactaagtgttatgctgctcagaagaagctcagcggtgttggttcttctgttgttattctgagctcacaaggagacccaccggatctatggcag  21661600  Previous    Next  AGI:  At5g53340.1    Description:  galactosyltransferase family protein. similar to transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT2G25300.1); similar to beta 1,3-glycosyltransferase-like protein I [Solanum lycopersicum] (GB:CAD30015.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) Range:  from: 21658035    to: 21660788    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g53350.1    Description:  CLPX (Clp protease regulatory subunit X); ATPase. similar to ATP-dependent Clp protease ATP-binding subunit ClpX, putative [Arabidopsis thaliana] (TAIR:AT1G33360.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75136.1); contains InterPro domain ATPase AAA-2 (InterPro:IPR013093); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain ClpX, ATPase regulatory subunit; (InterPro:IPR004487) Range:  from: 21661124    to: 21664933    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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