Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>ZmHOX2a(1)           --------->TOE2(3)           --------->TOE1(3)                      --------->At4g35610      <---------HSFC1(2)                       <---------At4g35610      --------->HSFC1(2)                       <---------ZAT2     --------->ANAC58                     --------->ANAC58     --------->ANAC58                     --------->ANAC58 ---------ZAT18         <---------ALFIN1 --------->WOX13(1) -------->ZAT18       <---------ALFIN1 <---------ATHB12   <---------MYB55(2) ------>At4g35610    <---------ZAT18 --------->ANAC46     --------->MYB46(3)        <----------DOF2   agctcacaagcttccttaaactgcccacacttagaatacaaatcactcaagctgcttccaacaactgagtttccctcaaacccagtctttataacagagc  21434400                                                    --------->DEAR3(1)                                                --------->MYB46(3)                                              <-----------GT1                                            ===================HOX2a_HOX2a                                            ------>ZmHOX2a(2)                                           ====================HOX2a_HOX2a                    <------                                           <------ZmHOX2a(2)                                  <------                                          <---------ARR14(2)                            --------->ANAC58                                          --------->ARR11(3)                            --------->ANAC58                                          --------->ARR14(3)                          --------->LBD16                      <---------ARR11(3)  <---------ARR14(3)                         --------->ANAC46                      --------->ARR11(3)  <-----------ARR10            <---------MYB52(1)    <-------             --------->LBD16              --------->AGP1          <---------ARR14(2) --------->LBD16            --------->ANAC46              --------->ARR14(2) ----------->GT1        <---------HSFB2a(2)            --------->ANAC55(2)           <---------ARR11(3)--------->DAG2          --------->HSFB2a(2)         --------->AtMYB61         --------->At4g35610     ---------->DOF2     --------->ALFIN1     -  ------->TEIL       <---------CCA1(2)    <---------AGP1<------ZmHOX2a(1)    --------->ALFIN1--------   catgaactcgacctccgtaactaatatctcttaaaccagcacaagatcttaccaccgaggaaaaagtgaattcgttcgggtgtgttcccgaagccatcat  21434500                                                                  --------->AtLEC2                                                            ------->GAMYB                                                        <---------YAB1 ------>ZmHOX2a(1)                                    --------->YAB1 --HAHB4                                             <------ZmHOX2a(2)        --------->ZAT14 ---ICU4   ---------->DOF2                          --------->ARR11(3)        <---------ZAT14 --ATHB12 ------->GAMYB                             <---------ARR11(3)       --------->ARR14(2) -------->TOE2(3)  --------->At4g35610             --------->GLK1(1)         <---------ARR14(2) ->ICU4--------->MYB52(1)                  ---------->DOF2 <------------AtMYB77 <---------ANAC46   ttcctcaaacaacgaaagcgctgatgcaaactcttggctcttggtaaaagcagagatcataactgtccatgcgaaaacagttctgtgagacatttcatcg  21434600                                                                                    ------>MYB83                                                                                  <---------MYB59         <-------TEIL                                                --------->GLK1(2)      <---------ANAC58                                              <---------ARR14(2)      <---------ANAC55(1)                                           --------->ARR14(2)      <--------      --------->ANAC55(2)                           <---------MYB46(3)            --------->AtMYB61      <---------ANAC58                            <---------GLK1(2) <---------GLK1(2)  <----------DOF2      <---------ANAC55(2)                     ---------->DOF2     ----------->ARR10 ------>MYB46(1)<X      <---------ANAC46               ---------->DOF2<-----------RAV1(1)     ---------->DOF2<---------YAB1   aacagtttacgtgcattccatataccatcggtttttaagtaaagactcaaaagattgttgcataagtcgagattctctaaaagaccaaactttattactg  21434700                                                                <---------YAB1              <--------                    <---------ANAC55(1)                    --------->ANAC55(2)              <--------                    --------->ANAC55(2)                    <---------ANAC55(2)          --------->MYB52(2)   <---------MYB46(3)            <---------GLK1(2)--------->ARR14(2)                  <---------MYB52(1)  --------->ALFIN1  <---------ANAC58              --------->GLK1(2)           <---------MYB59 <---------At4g35610<---------ANAC55(2)           <---------ARR14(2)         ----------------->AG ---GT1             <---------ANAC58        <------ZmHOX2a(1)  <---------ARR11(3)    --------->TOE2(3) XXXXXXXXXXXXXXXXXXXMIR416    <---------------------WRI1--------->ARR14(2)   ----------------->AGL1   ggcagtggatgtgtaaaccaatacgtgatgaattcgattcgcagaaggagagaatccgaatacatgatttttgaagattacccaattcgttagtgcgaga  21434800                    ----------------------->TaNAC69(2)                   <---------At4g35610                --------->At4g35610                <---------ZAT2                <---------At4g35610             --------->At4g35610             <---------At4g35610            <-----------RAV1(1)          <---------At4g35610          --------->HSFC1(2)                                              <------ZmHOX2a(2)          --------->At4g35610     <-----------HVH21                      --------->ARR11(3)       <---------At4g35610     <---------ANAC58                          <---------ARR11(3)        <- -ANAC58  <---------HSFC1(2)   <---------ANAC58<---------AtLEC2      ---------->DOF2         <------- -ANAC58 --------->GLK1(2) <----------DOF2<----------DOF2       ----------->GT1      <---------TOE2(3)   gagaaatgcagaagctgctgctgctactactttgctcgtcatttcttttgcatcaaacttttgaagacgataaaagatcgaaagtttaatgttcacattg  21434900                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                   --------->ICU4            --------                                                                <---------AHL20(2)           --------      --------->CCA1(2)                                         --------->AHL20(2)       <-----------GT1   <---------TOE2(3)                                   --------->ZAT14                --------->YAB1   ----------->ARR10                    ---------->DOF2<---------ZAT18                ----------->GT1 ------GAMYB                         --------->ANAC58  <---------ZAT14              <------------CBF- -----CBF   ------>ZmHOX2a(2)        --------->ANAC58--------------->AtSPL8       <---------YAB1<----   ctgttgagatttgatctcaaacacgatttagttggagggaagcaaagccctaagtactgtactcaaataaatatgaaacatgttgtaattgtaacaagtc  21435000                <------------CBF              <---------AHL20(1)              --------->AHL20(1)           <---------AHL20(2) --------->MYB52(1) --------MYB52(2) ------->MYB46(3) ------>At4g35610      --------->ZAT6         --------->ANAC58 -------At4g35610    ----------->RAV1(1)      --------->ANAC46 ->ANAC58  --------->AHL20(1)                 --------->ANAC58    ----------->GT1                 --- ->ANAC58  --------->AHL20(2)            <---------ICU4         <------------CBF   <-----------RAV1(1) ------>GAMYB --------->ARR11(3)         --------->YAB1       <---------YAB1<---------DAG2        <-- -----WRKY12  <---------AHL20(2)  ----------->RAV1(1)   <---------TOE1(2)   <----------DOF2      ----   aactaacaacaaataaaatattgcaacactattagccaacaaattatcacacaacttctacgttctaattgttaaaaacttttttttgttgtgcgactga  21435100               <----------DOF2          --------->YAB1         <---------YAB1                                   --------->AHL20(2)       --------->YAB1                                     <---------AHL20(2)                <--------       <-----------GT1                                  --------->AHL20(2)        --------->ZAT18 <----------DOF2                                     --------->AHL20(2)           <---------ZAT18 ------>ARR11(3)                           ----------->RAV1(1)  <---------AHL20(2)<---------ZAT14 -------ARR11(3)             <---------ARR11(3)   ----------->GT1      --------->ANAC55(2)  <-------- ----->GLK1(1) <---------DAG2--------->ARR11(3)---------->DOF2<---------AHL20(2)  --------->ZAT14<---   aatctttatttatcatacttttttgttacaagaacttaaaacatacaacaaaagataaatttatattttttttatgtaatatggtgtactattggctagc  21435200                <---------AHL20(2)      <---------MYB46(3)      <------MYB46(1)      ----------->GT1      <------MYB83     --------->MYB59        <---------AHL20(2)                              --------->ANAC58     <---------AtMYB61<-----------GT1                      --------->YAB1   --------->ANAC55(2) -ANAC58       <---------AHL20(2)                         <-------TEIL      <---------ANAC55(2) -ANAC58       --------->AHL20(2)                 --------->GLK1(1)   ---------->DOF2  ----------->GT1 -------DOF2   <---------AHL20(1)             --------->ANAC46<---------ICU4--------->ANAC58    <----   ttttggtttggttacaattttttttcacattttatgtccagagtaaacacagaattcatattcataattttcaaaagtaagtaatagagaagaaaatttt  21435300  Previous    Next  AGI:  At5g52850.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49518.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 21432161    to: 21434842    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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