Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <------MYB46(1)      ----------->TGA1                                       <------MYB83                         ---      ----------->HVH21                                     --------->MYB59                  --------    --------->YAB1                                          <---------TOE2(3)                <------- -------->GLK1(2)                                      <---------YAB1                   <---------ZAT14 ------->ARR14(2)                                     =============================================== --------GLK1(2)      --------->ANAC58                <---------------AGL15            <----------DOF2 --------ARR14(2)     --------->ANAC58                <----------DOF2                  --------->TOE2(3) ------->ARR10        --------->AtLEC2              <---------YAB1              <---------YAB1    --- -DEAR3(2)    --------->CCA1(2) <-----------GT1   <---------CCA1(2)  ---------->DOF2<-----------GT1   agattctcatgacgagagatgggcatgcaagttgttacctctctcgattgtcttatctttattaggtttttaaaagtgttttcttattactttagtgaac  21430500      --------------->AtSPL8      <---------------AtSPL8      <---------TOE2(3)    <---------AHL20(2)                                                      --------->TOE2(3)   --------->AHL20(2)                                                       --------->TOE1(2) ------>ANAC58                                                      --------->CCA1(1) ->ZAT18    --------------->AGL15                 <----------DOF2   --------->RVE1(1) --ZAT18  ------->TEIL                   --------->DAG2         --------->AHL20(2) ===========================MADS_MADS   ---------->DOF2--------->HSFB2a(2) --------->ANAC58 ------>ANAC58                     <------ZmHOX2a(1)   <---------HSFB2a(2) --------->ANAC58--------->ARR14(2)   aagcatttaatgtaccaaaaatatcaaaacaaatcgaggaaaaaaagtgtttcttttttagaaaaaaaaaatatccaacgtaagagttggccatattttc  21430600                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                 ----                                         <---------AHL20(2)                                      ----                                         --------->AHL20(2)<---------YAB1                        <---                              <---------YAB1              --------->AHL20(2)                     <---                             <---------AHL20(2)           <---------AHL20(2)                     ----                             --------->AHL20(2)          --------->AHL20(2)                      <---                         <---------CCA1(1)      <---------YAB1                                  -----                         <---------RVE1(1)    <-----------GT1                 ---------->DOF2   <----                        <---------AHL20(1)<---------AHL20(2)       --------->YAB1               <----                        --------->AHL20(1)--------->AHL20(1)   <---------AHL20(2)             -------                        --------->ARR11(3)--------->AHL20(2)   --------->AHL20(2)          ----------       ------>NtERF2    <---------ARR11(3)<---------AHL20(1)  --------->AHL20(2)           --------->ANAC55(2)   --------->PCF5   ---------->DOF2 >>>>>>>>>GATA-1      --------->YAB1----------->GT1     <---------ANAC55(2)   taatggtcccgactcacaaaaaaaaagatattttaatagataaataaattacaattgaattaaaattaataagaagtaaaaaaagatagaattaagtaat  21430700  <---------YAB1 ------->HAHB4 ---------ICU4 -------->YAB1 ------->ICU4 ----->ATHB51                                        ------->GAMYB ---->HAHB4                       --------->YAB1    <---------MYB52(2) ------ICU4            --------->YAB1               --------->MYB46(3) -----ATHB1         --------->WOX13(1)              <------------MYB.PH3(2)                    ------ ----->YAB1        <-------TEIL  <---------ATHB12 ----------->RAV1(1)                      <---------ICU4 -----HAHB4       <------ZmHOX2a(2)            --------->ANAC58                            --------->YAB1 ---->ICU4       <---------ARR14(2)            --------->ANAC58           <---------ICU4  <---------YAB1 -----YAB1       --------->AGP1--------->WOX13(1)<----------ID1        --------->YAB1     <---------AHL20(2) -----ATHB51     --------->ARR11(3)            --------->ANAC46 --------->WOX13(1)     <---------AHL20(2) -->YAB1         --------->ARR14(2)      <---------TOE2(3)    <---------ATHB12     --------->ATHB51 ->GT1           <---------ARR11(3)  --------->TOE2(3)      ------>ZmHOX2a(1)      --------->AHL20(2)   aattatgcttaaaaatcaagatccatcatatgtcaatcacattaatgctaagcaacaaactcctatcaattactaataaggcccattattttataattag  21430800                                           --------->At4g35610                                           <---------At4g35610                 ------>NtERF2             ----------->RAV1(2)               <---------RAP2.6(2) <----------DOF2                                                  -        ------------>CBF     <----------DOF2                                                        <    --------->AHL20(2)      <---------ANAC58                                                        <    <---------AHL20(2)      <---------ANAC58 ----------->HVH21                                     <-   --------->AHL20(2)--------------------->WRI1                   --------->At5g28300              -- --->MYB59    --------->RAP2.6(3)  <---------DAG2     ---------->DOF2   *TSS   --------->ANAC46  ----   gcccattaaattcaatttcggcccatagtttctttcgctttctccatctgacaagtgaaagttgacactgtaaacaactacaaacaacatttctgagatt  21430900                                                                    --------->ATHB12                                                                    <---------ICU4                                                                    -------->ATHB1      --------->WRKY18(1)                                           --------->ATHB51   <------NtERF2                                                   --------->ICU4  --------->LBD16                                                  <---------YAB1   --------->At4g35610 --------->DEAR3(1)                                                <---------ATHB51 <---------At4g35610 -------->ATERF1(1)                     <---------ARR11(3)       <---------------AGL15             -- ---------LBD16                         --------->ARR11(3)      ----------------->AGL2   ----------->HVH21 ------NtERF2                    <---------MYB46(3)         --------->SPL7   --------->DAG2      ---- --------RAP2.3(1)            --------->MYB52(1)            --------->RAP2.6(3)  ---------->DOF2 <--- ---->NtERF2                --------->MYB46(3)            <---------SPL7    ---------->DOF2 <-------- ----->ZAT18               <------ZmHOX2a(2)    <---------LBD16 <-----------------AGL2 --------->At4g35610   gcgccggagtcaaggagagggagagagcgatccaacggttgagatgtttctacgggcaatcggacggccattattggctaaagtgaagcagacgacgggg  21431000                                                                                    <------NtERF2                                                                           --------->ZAT2                                                                           <---------ZAT2                                                                      ========================HOX2a_HOX2a                                                                      <------ZmHOX2a(2)                                                                      --------->CCA1(2)                                                                     --------->ARR14(2)                                                                     <---------ARR11(3)                                                                     <---------ARR14(2)          <---------TOE2(3)                                          --------->ARR11(3)      <-------       <----------DOF2                   ------>ZmHOX2a(2)           --------->AGP1--------->LBD16      <---------ANAC58             <---------At4g35610              --------->GLK1(1)        <-------      <---------ANAC58             --------->At4g35610              <---------GLK1(1)  <------ZmHOX2a(1) ---->ZmHOX2a(2)                  --------->ALFIN1            ---------->DOF2     <---------ANAC46 ----->ARR14(2)                <---------DEAR3(1)          --------->TOE2(3)   ----------->HVH21 ------ARR14(2)                --------->ALFIN1            --------->TOE1(3)   --------->ALFIN1    <- -ANAC46----------->HVH21     <---------ZAT14------>ZmHOX2a(2)--------->MYB52(1) <---------LBD16 ----   atcgtcgggcttgacgttgttcccaacgcgagagcggtgctgatcgatctctacagcaaaaccctaaaggagatccaagctgtgccggaggatgaagggt  21431100                             --------->TGA1a                                                <--------                           ------>NtERF2                                                   --------->WRKY18(1)                          --------->DEAR3(1)                                              <----------                         <------NtERF2                                                <---------MYB46(3)                        ------>NtERF2                                               <---------ANAC58                       --------->ANAC58                                             <---------ANAC58                       --------->ANAC46                              <---------WOX13(1) <---------AtMYB61              <---------ATHB12                                     --------->ATHB12 <-------GAMYB   --------->DAG2      --------->ANAC58                  <---------ARR14(2)        <---------MYB46(3)  =====================================bZIP_DOF          --------->ARR14(2)     <---------ANAC58  ---------->DOF2    --------->ANAC46                   --------->ATHB12     <---------RAP2.6(2) --------AtSPL3      --------->ANAC58              >>>>>>>>>TBF1  <---------YAB1<---------ANAC46 --------AtSPL8      --------->ANAC58        --------->ANAC58     --------->ICU4<---------ANAC58 --------ANAC46 --------->WOX13(1)           --------->ANAC58   <---------At4g35610<------MYB83 ----->SPL7   --------->ICU4 --------->O2  <---------AtLEC2     --------->At4g35610<------MYB46(1)   accgtaaagcggtggaatcattcacgcgccaacgtctcaatgtgtgcaaggaagaagaagattgggagatgattgagaagcggcttggttgtggtcaagt  21431200                                                        <---------ANAC58                                                        <---------ANAC58                                                       <-------TEIL                                                       --------------->AtSPL8                                --------->ZAT6      <---------MYB46(3)                             <---------ZAT18        <------MYB83                   --------->ANAC58               <---------WOX13(1)        --------->HSFB2a(2)  --------->ZAT18    --------->ATHB12  <---------ARR11(3)       --------->At4g35610  -------->HAHB4  --------->ARR11(3)   <----------CDC5         <---------YAB1        <---------ANAC46 -WRKY38(1)        --------->ANAC58 --------->ATHB12<------MYB46(1)  <---------ANAC58 -HVH21 <---------HSFB2a(2)<---------At4g35610 --------->ICU4        <---------ANAC58  --------->ATHB12   cgaagagcttatcgaagaggctcgcgatgagctcacactcattgggaaaatgattggttcgtactctcgttgcctatatagattgagaacaattggaata  21431300                                                                                   <------MYB46(1)                                                               ------>ZmHOX2a(1)   <------MYB83                                                             ----------->RAV1(2)  --------->MYB111(1)                <---------ICU4                             <---------ARR14(2)     --------->MYB46(2)                --------->YAB1                        XXXXXXXXXXXXXXXXXXXX>MIR2111A/B       ---------               --------->ICU4                        <---------ARR14(2)           --------->MYB59  --       <---------MYB46(3)                            --------->ARR14(2)         <---------MYB52(1)<--       <-----------RAV1(1)                           --------->GLK1(2) <---------ANAC46     <--------   --------->ATHB12              --------->CCA1(2)  <---------GLK1(2)<----------DOF2        --------- <---------WOX13(1) --------->WOX13(1)      <---------YAB1 --------->ARR14(2) <---------MYB46(3)  ---   tagattgatttgttgcgataatcactcaaattgagaaatgggttttgtaattgagaatctgaatcctgaggctttgtggattgttaggttgcaaaatctg  21431400  Previous    Next  AGI:  At5g52840.1    Description:  NADH-ubiquinone oxidoreductase-related. Identical to Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9FLX7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28005.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49517.1); contains InterPro domain ETC complex I subunit; (InterPro:IPR006806) Range:  from: 21430872    to: 21432232    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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