Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ---------->DOF2                                                                     <---------TOE2(3)                                                                    ---------->DOF2                                                                  <---------YAB1     ------>NtERF2                                              --------->YAB1    >>>>>>>>>AtERF-3                                            <---------ICU4    >>>>>>>>>AtERF-4                                            --------->ATHB12  <---------At4g35610                                           <--------ATHB1  --------->At4g35610                                          --------->ICU4               <--------  --------->ZAT2                              --------->TOE1(3)<---------ATHB12   --------->MYB46(3) <---------ARR11(3)                           --------->TOE2(3)<---------YAB1  <----------ID1       <   caagagctgccaaaaccctactaaatctaaaactaaattgaactaaaaccctaatcccaaaaccaatgattaaagaagaaaagaacaaaccttgtttctc  21280000                   ---------->DOF2                                                <------ZmHOX2a(1)           <-----------GT1                                                      --------->ANAC46   <-       <---------GLK1(2)                                                       <---------LBD16     <- ---GT1--------->ARR11(3)                                           --------->LBD16                <- ---------ALFIN1<------ZmHOX2a(1)            ----------->HVH21     <-----------RAV1(2)        <------ZmHOX2a(1)   tcccactcagatttttcaggacaaagcttagcaatatgggttttggaatgacatataaaacagccttctccaggtttcataccaggaactcgaagaggat  21280100                                           --------->LBD16                                          <-----------RAV1(2)                                        --------->CCA1(2)                                        <------ZmHOX2a(2)   --------->HSFB2a(2)                 --------->AGP1                         <<<<<<<<<TBF1         <   <---------HSFB2a(2)                 <---------ARR14(2)                  <<<<<<<<<TBF1            - <---------ANAC46                      --------->ARR11(3)               <<<<<<<<<TBF1            <--- --------ANAC58                        --------->ARR14(2)      --------->ANAC58                <----- --------ANAC46                        <---------ARR11(3)      --------->ANAC58                ------ --------ANAC58            --------->WOX13(1)     <----------DOF2 <----------DOF2  <---------YAB1<---   gtcttgtggaagagcctgttctctgaggtctatcagtggaagatccaggtttctttttcttgaacaagcttttcttcttcttcttcttattagggtcctt  21280200            --------------->AGL15           ==========================================================================================           <-----------------AGL3           <-----------------AGL2           <-----------------AG         --------->ARR14(2)         <---------ARR14(2)       <------MYB83       <---------MYB46(3)       <---------DEAR3(2)       <------MYB46(1)      <---------AtMYB61     <---------MYB52(1)    <-------GAMYB   <---------ANAC58   <---------ANAC46   <---------ANAC58  <------NtERF2              <---------LBD16             --------->ANAC46 ---------DEAR3(1)        --------->At4g35610       <----------DOF2       <---------MYB46(3) ---------->TGA1  --------->HSFB2a(2)         <---------CCA1(2)         <---------MYB52(1) ------AtMYB61 <----------DOF2            <---------ANAC58    <-----------ARR10                ------ -----DOF2 <-----------------AGL1         <---------ANAC58   --------->ANAC58                 ------- >ZmHOX2a(1)<---------------AGL15         <---------ANAC46   --------->ANAC58   <---------YAB1<------ --------RAV1(1)  <---------HSFB2a(2)--------->At4g35610<---------LBD16<----------DOF2 --------->WRKY38(1)   tggtggcgttggttctgcttttggaaacagctctggattagcttccttgtatcgcttctgcgcaagtcttctcctttggttcaccattgttgactactgt  21280300                                   <---------MYB46(3)                                  <---------AtMYB61                                  --------->ALFIN1                                 <-------GAMYB                                <---------MYB46(3)                                <---------DEAR3(2)                               <---------DEAR3(1)                               <---------ANAC46                               <---------AtMYB61                               --------->ALFIN1                               <---------DREB2C(2)                              <------NtERF2                              --------->ATERF1(1)                              <---------ABI4(1)                             <---------DEAR4(2)                             <---------RAP2.3(1)                             <---------ERF1                             <---------RRTF1(1)                             ------>NtERF2                             <---------ATERF1(1)                             <---------RAP2.6(1)                            <---------DEAR3(1)                            <---------ATERF1(2)                            --------->ATERF1(2)                            --------->DEAR3(1)                            <---------RAP2.3(2)                            <---------RRTF1(3)                            <---------RAP2.3(3)                            <---------RRTF1(2)                           <---------ABI4(1)                           <------NtERF2                           --------->ATERF1(1)                           --------->RAP2.3(1)                          <---------ORA47(2)                          <---------RAP2.3(1)                          <---------ATERF1(1)                          <---------RAP2.6(1)                          <---------DEAR4(2)                          <---------ERF1                          ------>NtERF2                         <---------DEAR3(1)                         --------->DEAR3(1)                         <---------ATERF1(2)                         --------->ATERF1(2)                         <---------RAP2.3(2)                                 *TSS                        --------->ATERF1(1)                               <-------GAMYB             --------->ATHB12<---------ORA47(2)                          <---------MYB46(3)     ---------->DOF2    <---------LBD16<------NtERF2                  <------MYB46(1)     <---------ANAC58 =========MADS_MADS    <---------RAP2.3(1)                            <------MYB83  --------->ARR11(3) --->At5g28300   --------->ATHB12<------NtERF2                       <---------AtMYB61    <---------ANAC58 ---->GT1   <---------YAB1--------->LBD16                            <---------MYB46(3)  <---------STY1(2) ---------AGL15<---------WOX13(1)--------->ATERF1(1)<------ZmHOX2a(1)--------->MYB59<---------ARR11(3)   aattagagaaagacacgattgatttcgccggcggcggtggaggcagtgagacgaggaagacacaagtttgtttggtcgttgaagaagctcttgctagggg  21280400                                    --------->At5g28300                                   ----------->GT1                                <---------ALFIN1                         <---------At4g35610                         --------->At4g35610                         ----------->RAV1(2)                    ------>MYB46(1)                       --------->YAB1                           ------>MYB83                      <---------ATHB12                        <---------MYB59                    --------->WOX13(1)                        <---------MYB111(1)        --------->AHL20(2)     --------->ZAT18               --------->ANAC55(2)         <---------AHL20(2)        <---------AHL20(2)   --------->PCF2           <-------TEIL            --------->ARR11(3)   <---------YAB1 ------------>CBF <---------ZAT6 --------->ARR14(2)     --------->MYB52(1)   atgttgtgatttaaatgggcttcaatcatctggcccactgttaatagacccaaatattcatatacctaatcttgctaagggatattgtgttttaaatggg  21280500                                                          <---------MYB59                                                    --------->WRKY18(1)                           <--                  <-----------HVH21                <-----------HVH21                              <--               --------->ZAT14                  --------->ATERF1(1)                              ----     --------------->AGL15              <-----------RAV1(1)    <---------DAG2                <-------     <---------------AGL15       ---------->DOF2<------NtERF2  <----------DOF2               <-------   cctatttcaaattttagaacagtcagagtcagagtcaaagttttgttggagccggtcatgcctaactttttttttttttttcgctcatgcctattgccta  21280600 -------ANAC58 -------ANAC58 ----->ZAT2 --ANAC58                                                                                        <--- --ANAC58   --------->YAB1           --------->YAB1             <---------ANAC55(2)              <---   gcttactcacataagcatagcaaaacttatcccactgtataagaacatttccctaaccatgttaacaagtatcaactagggtctagggatgggcacattg  21280700                                                                    --------->YAB1                                                                   <---------ATHB12                                                               <---------MYB59                                                           <---------SPL7      --------->ANAC55(2)                                                          --------->ANAC46--------->AHL20(1)                                                 <-------TEIL--------->SPL7--------->CCA1(2)                                               <---------SPL7------->TEIL <---------ARR11(3)                                              <---------ANAC58 --------->MYB46(3)     <----------DOF2                                              <---------ANAC58--------->ANAC58 --------->ANAC55(1)                 --------->AHL20(2)     <----------DOF2  --------------->AtSPL3<---------ANAC55(2)            --------->TOE2(3)       <-----------GT1      --------------->AtSPL8--------->ANAC46      <---------ICU4               <---------AHL20(2)<---------ARR14(2)   --------->ARR11(3) ------ANAC58    <---------AHL20(2)--------->AHL20(2)--------->ARR14(2)  --------->AHL20(2) ------ANAC58------>ZmHOX2a(1)  ------->TEIL  <---------ANAC46--------->ANAC58<-------TEIL<---------MYB46(3)   ccttctaataagttcctaaatatttagcggtatgcatttaaacttttggcgttcgtatacccgtacccaatcgaaatatatacgtattcttttggttact  21280800                                                                          --------->ARR11(3)                                                                        --------->ANAC58                                                                   <---------TOE2(3)                                                                   <---------TOE1(3)                                                                  <-----------GT1    ----------->RAV1(2)                                                              <----------DOF2      <---------ALFIN1              <---------ARR14(2)         ---------->DOF2<-------TEIL    --------->ANAC58              --------->ARR14(2)    <---------YAB1      ------->TEIL --------->TOE1(2)      <--------  ----------->GT1--------->ANAC46--------->ICU4     <---------TOE2(3)--------->TOE2(2)    ------->TEIL   cgaatgctaataaacatatactcaaaaaccaattgattatgaataaagaaaactaatgtacatacttttaacgtaagacattctaacacctgtactttca  21280900  Previous    Next  AGI:  At5g52380.1    Description:  zinc knuckle (CCHC-type) family protein. similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT3G43590.1); similar to unknown [Populus trichocarpa] (GB:ABK94395.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084) Range:  from: 21278579    to: 21280377    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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