Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ARR11(3)                                                            --------->ARR14(2)                      -                                                        --------->ANAC46                            -                                                  --------->YAB1                                    =                                                  -------->HAHB4                    <----------DOF2 <                                                  <---------ICU4    --------->ARR14(2)              <                                                 <---------YAB1     <---------ARR14(2)              -                                               <---------ICU4<------ZmHOX2a(2)      ------>ZmHOX2a(1)                          --------->AHL20(2)   --------->YAB1==============================HOX2a_HOX2a                  <-----------GT1           --------->YAB1  <---------ARR11(3)      =================             --------->AHL20(2)         <---------MYB46(3)  <---------ARR14(2)   ---------->ID1   <--             <---------AHL20(2)     --------->MYB52(2) --------->TOE1(2)----------->GT1         <----   aagacttctatgcatataatttacacattttaaaaggtttgtttgttaataataatacccacgatctacgaatactgtatattgtccttttctaattccc  20892700          --------->HSFB2a(2)          <---------HSFB2a(2)       <---------SPL7      <---------DAG2      <----------DOF2 <-------MYC3 ------->MYC3 -------->ANAC46                                                                                    < -------->O2                                                                   ----------->GT1   <--- ================bZIP_DOF                            <---------YAB1          ---------->DOF2     ---- ---------O2                                       --------->YAB1  --------->AHL20(2)          <----- ---------TGA1a                                 <---------ICU4     <---------AHL20(2)        -------- -------->TGA1a                                 --------->YAB1     <---------AHL20(1)        <------- =========bZIP_DOF                             --------->ICU4      --------->AHL20(1)       <-------- -------ALFIN1              <---------------AGL15 <---------YAB1  <---------AHL20(2)        --------- -----ALFIN1    ----------->GT1           ----------->GT1         --------->AHL20(2)      --------->WOX13(1)   acacgttgccttaccgaagtgtgatattatctaaaataggtgtaatgtaattatcataaatatacaaattaaatttttgtaaagaaaaaaatcaattaat  20892800                                           --------->YAB1                                           --------->ATHB51                                           -------->HAHB4                                           <--------HAHB4                                           <---------ICU4                                           <--------ATHB1                                          <---------ATHB51                                          <---------YAB1        --------->YAB1                    --------->ICU4        --------->TOE1(3)               --------->YAB1     <---------CCA1(2)                 <---------AHL20(2) <-----------GT1                       --------->AHL20(2) <<<<<<<<<GT-3b                       <---------AHL20(1) ------AHL20(1)                       --------->AHL20(1) ----->AHL20(1)           <---------At4g35610     ----------->RAV1(1)                ---------------- ----TOE2(3)     --------->LBD16      <---------AHL20(2)                       --------->ZAT14 ->AHL20(2)    <---------LBD16        --------->AHL20(2)                   --------->DAG2 --AHL20(2)  --------->ARR14(2)   ------>ZmHOX2a(1)                       ---------->DOF2         --- -ATHB12--------->TOE2(3)<---------TOE2(3)--------->AHL20(2)         <---------TOE2(3)            <-- >AHL20(2)   <---------ARR14(2) --------->YAB1 <-----------GT1       <---------TOE1(3)          <----   atttttcttatcttaaatccgcatattaagctaatcctaatttaataattaacaacataattcaatgttttaagggtaaagtatagtagtagaccatttt  20892900                            <----------DOF2                          <---------YAB1                     --------->ZAT6                    --------->ZAT14                    <---------ZAT14                  --------->ANAC46               --------->ZAT18               <---------ZAT14    --------->AHL20(2)   <---------ARR11(3) ------->TaNAC69(2)----------->RAV1(1)                                                 <---------AHL20(2) ------>ANAC46 <---------ZAT18                      <---------WRKY12   <---------MYB52(1) ---------GT1  --------->ZAT14  ---------->ID1 <<<<<<<<<<<<WRKY18     --------->At5g28300 <---------YAB1 -------GT1<-----------------------TaNAC69(2)  ---------->DOF2    <---------ALFIN1   <----------DOF2   acacaatttaagagatgtgcacaacactatctttgtctcattctaagtcaaaagtcaacttaaaaatcccaccgtgattcccattttcttttattttagc  20893000                 <---------AHL20(2)                 --------->AHL20(2)                                                  <---------ARR14(2)              --------->YAB1                                                         ------->TEIL              --------->AHL20(2)               <---------MYB52(1)                    --------->ARR14(2)          --------->AHL20(2)              <----------DOF2                     ------------>CBF          <---------AHL20(2)          ---------->ID1                        <----------DOF2         --------->AHL20(2)       <----------DOF2                       <---------CCA1(2) <---------MYB52(1)   ccaaaaaacaaattaataaaaaattcgaaacactctctttttctctttcgttatgtctctctctctctctctccatctctttcaatgtatccgttagaac  20893100            --------->At4g35610            ------>NtERF2            <---------At4g35610                                                                    --           --------->DEAR3(1)                                                               ---------           --------->RRTF1(3)                                                               ---------           --------->RAP2.6(2)                                                              <--------           --------->RAP2.3(2)          <------ZmHOX2a(2)              <---------ANAC58     <--------          --------->RAP2.3(1)          --------->AGP1                  <---------ANAC58    <------NtERF2         ------>NtERF2 --------->MYB46(3)                              <---------ANAC46   <---------RAP2.6(3)         --------->LBD16--------->TOE2(2)           >>>>>>>>>TBF1    <---------TGA2(2)    ------>NtERF2  *TSS  --------->ANAC46--------->TOE1(2)    --------->O2           ----------->TGA1     --------->DEAR3(1)   agttcgtaatccgccgctaaatcaaaccagcgagagagatagatccaacgtgaagaagaaatcgaaaacgatgacgtttagggagaaaatgccgacgagt  20893200                                                                                    --------->LBD16                                                                                    ------>NtERF2                                                                      --------->ANAC46  <---------MYB52(1)                                                                      --------->ANAC58 --------->At5g28300                                                                    ---------->DOF2--------->DEAR3(1)                                                                <---------ANAC46   --------->ANAC46                                       <-------TEIL          --------->O2 --------->ANAC58                                <---------WRKY18(1)          <---------O2 --------->ANAC58 ---->ZmHOX2a(1)            --------->ZAT2                   --------->bZIP60(1)  --------->ATERF1(1) >O2                        <---------ZAT2 ----------->GT1   <---------bZIP60(1)  <---------LBD16 >TGA1a                     <---------At4g35610           ----------->HVH21      <---------ATERF1(1) -O2                        --------->At4g35610     <-----------HVH21 --------->ANAC58 <-------GAMYB -TGA1a               <---------SPL7 <---------MYB52(1) --------->At4g35610     --------->ARR14(2)  -   cctaaatcgcctctgagaagacgacgttcgagctggaccggtacatggttaaaccatcagacgacgtcgtttaagcaagcagtctccgccgttattcaag  20893300                                                                                                    -                                                                                                    <                                                                                                    <              --------->LBD16                                                                       -             <-----------RAV1(2)              <---------TGA1a                                       -           --------->CCA1(2)                  --------->TGA1a                            <---------GLK1(2)           <------ZmHOX2a(2)                  <---------O2               --------->GLK1(2) ------>ZmHOX2a(2)          --------->AGP1                      --------->O2              <---------GLK1(2)<---------ARR11(3)          --------->ARR11(3)               --------->DEAR3(1)           <---------ARR14(2) ==========          --------->ARR14(2)               ----------->HVH21            --------->ARR14(2)===========          <---------ARR14(2)         <---------GLK1(1)                 <---------At4g35610<------ZmHOX2a(2)          <---------ARR11(3)      <---------YAB1                   <-----------HVH21     --------->ARR14(2)   --------->YAB1           <---------ARR14(2)=========================bZIP_DOF          <---------ARR14(2)  --------->MYB46(3)        --------->ARR14(2)==========================MYC_MYB          --------->ARR11(3)  <---------ATHB12         <---------CCA1(2)------>NtERF2       <-------GAMYB            <---------ARR14(3) -------->WOX13(1) --------->AHL20(2)--------->GLK1(1)      <----------DOF2              --------->ARR14(3)   ctcaatcaccaagatccaggtttaaatccctatcttctgatttctccgacgtcgatcgaactctttcgttgtcagattctcttcttctcaagatccttga  20893400                                                          <---------LBD16 --------->LBD16                                                       <---------ZAT14   --------->ANAC46         ------->TEIL                                 <---------ZAT6     --------->ANAC55(2)        <---------CCA1(2)                           <---------ANAC58    <---------LBD16        <---------GLK1(2)                      <---------MYB46(3)     <---------ARR14(2)      --------->LBD16              <---------ANAC46 <---------ANAC46  --------->ARR14(2)      ------>ZmHOX2a(1)          <---------O2  --------->MYB55(2)    --------->DOF5.7(2) -------->At4g35610              --------->TGA1a    <---------ANAC58<----------DOF2 ---------HSFB2a(1)              <---------TGA1a<-------GAMYB      <---------ANAC46 ---------HSFC1(2)               --------->O2 <---------AtMYB61   <------NtERF2              <------- -------->HSFB2a(1)    <---------ARR11(3)     --------->ALFIN1  <---------DEAR3(1)         --------->ATHB12 -------->HSFC1(2)     --------->ARR11(3)<---------DOF5.7(2) ----------->HVH21     <---------TOE1(3) ============HOX2a_HOX2a         ==============================================bZIP_DOF   <---------YAB1 ============HOX2a_HOX2a         =======================MYC_MYB--------->SPL7      <---------TOE2(3)-   gaagcttcctgaatctcagaacgaagatgtttcactcgtgtgtaaacggtggttgagtgttcagggacggcgtttacggagtatgaaggtttttgattgg  20893500                                                                <---------ANAC55(2)                                                                <---------ANAC46                                                                --------->ANAC55(2)                                                                <---------ANAC58                                                        <------MYB46(1)                                                   --------->ATHB12                  <---------ANAC58             <---------ZAT6   <---------ANAC58         <---------LBD16           <---------HSFB2a(2)             <---------YAB1   <---------DOF5.7(2)         <---------LBD16   <---------YAB1 <---------ANAC58    <---------At4g35610  <---------WRKY38(1)   --------->ANAC58   <---------AHL20(2)                 --------->At4g35610 --------->DOF5.7(2)<-----------HVH21 --WOX13(1)--------->HSFB2a(2)--------->GLK1(1)--------->ALFIN1 >>>>>>>>CAMTA3   --------->ANAC58 -------->ICU4    <---------ANAC46 ------>ZmHOX2a(1)    <------MYB83    --------->WOX13(1)--------->LBD16   gaatttttattgtctgggaggcttgtttcgaggtttcctaagcttacgagtgttgatttggttaacgcgtgtttcaatccgtcgagcaattcagggattt  20893600  Previous    Next  AGI:  At5g51380.1    Description:  F-box family protein. Identical to F-box protein At5g51380 [Arabidopsis Thaliana] (GB:Q9FGN3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51370.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO70148.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 20893102    to: 20895215    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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