Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------ZAT18  <---------ZAT6                                                                      --------->SPL7   ----------->GT1       <---------ANAC58                                           --------------->AtSPL3 ---->MYB52(1)                                                    <---------ICU4      <---------TOE1(3) ->ANAC55(2)           ----------->RAV1(2)                   --------->LBD16        --------->STY1(1) --At4g35610           --------->At4g35610                 ----------------->AGL1 ------>NtERF2 ->At4g35610   <---------At4g35610                         <---------LBD16     <---------RAP2.3(1) --ANAC55(2) <---------DEAR3(1)                           --------->MYB52(1)  <---------DEAR3(1) <--- >MYB59<---------ANAC58<---------At4g35610      ------>ZmHOX2a(1) --------------->AtSPL8    <-------- --RAV1(2)  ------>ZmHOX2a(1)         <---------SPL7 ----------------->AGL1 <-----------HVH21<-------   actgaatttgcgtcctcggctcatcatctgcccatctcgacttacgcttcctagtcccagtaccggaatcagtacccccttcggcgctagggttattaat  20869200                                --------->HSFC1(2)                             ------>NtERF2                      --------->DREB2C(2)                      --------->DEAR4(1)                      --------->DEAR3(1)                      --------->MYB46(3)                 ------>ZmHOX2a(2)                 ============================HOX2a_HOX2a                =============================HOX2a_HOX2a                <------ZmHOX2a(2)                --------->PCF2  --------->HSFB2a(1)               --------->ARR14(2)           <----------DOF2               <---------ARR11(3)          <---------ANAC46               --------->ARR11(3)          <---------ANAC58               <-----------ARR10<---------HSFC1(2)                                        ---------->CDC5               <---------ARR14(2)          <---------ANAC58                             --------->ANAC46         <---------DEAR3(1) ----------->HVH21                             ------>ZmHOX2a(2)         --------->ALFIN1   --------->DEAR3(1)                  --------->ANAC46      --------->ZAT6        <---------LBD16 ------>MYB46(1)  ------>NtERF2         ----------->RAV1(1) <-----------GT1  <-----------RAV1(2) ------->GAMYB      --------->LBD16      --------->ANAC46    --------->DOF5.7(2) ------ZAT18  <------ZmHOX2a(1) <---------HSFB2a(1)        --------->ANAC46 ------>ZmHOX2a(1) -YAB1--------->DAG2 --------->DEAR3(2)<---------LBD16    =======================HOX2a_HOX2a --AHL20(2)<------NtERF2------>MYB83  ------>ZmHOX2a(1)   ------>ZmHOX2a(1)--------->TOE2(3)<--------   ggactcagaaggcggaggatcccaccgactccgacgcttcctccggcttgtagtctcttcctctccaccagactgatccttatcgttaccactcagcgtc  20869300                                                                         <------ZmHOX2a(1)                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)        ------                                                                  --------->LBD16           ---------                           --------->ANAC58                     <---------ANAC46            ---------                           --------->ANAC58  <---------At4g35610<---------LBD16             ---------                         <------ZmHOX2a(1)<----------DOF2     <---------ARR14(2)          ---------->DOF2         <---------MYB52(1)<---------ANAC55(2)                --------->ARR14(2)     ----------->GT1    <---------ALFIN1 ---------->DOF2 <-----------RAV1(2) <---------MYB52(1)       <---------ARR14(2) -At4g35610     <---------MYB52(1)--------->At4g35610------->TEIL<---------LBD16  --------->ARR14(2)   ttgctaacaccgttctccgatagcaaaggacgtaagagctcaggctttgctgatgaaccattagtatcggggataggagtagaagaaccgtttaaagcca  20869400                                                                           ------>ZmHOX2a(2)                                                                         --------->ARR11(3)                                                                      <--------P                                                                     <-------GAMYB                                                                    <---------MYB46(3)                                                                   <---------AtMYB61                  <-------TEIL                                    ================HOX2a_HOX2a                <---------ARR14(2)       <---------At4g35610    --------->ALFIN1       --------->ARR14(2)                <---------ZAT14       <------ZmHOX2a(1)       <---------ARR14(2)  ------>ZmHOX2a(2)                   ===================HOX2a_HOX2a ----->RAV1(1)  --------->ARR14(2)   --------->ALFIN1      =======================HOX2a_HOX2a  <----- >ANAC46       ===================HOX2a_HOX2a              <------ZmHOX2a(1)                  ------- >ANAC58       <------ZmHOX2a(1) <---------ANAC58    <---------MYB52(1)<-------TEIL     --------->ARR14(2) >ANAC58     <---------TOE2(3)   <---------ANAC58   <-------GAMYB <------ZmHOX2a(1)     <---------ARR14(2)   cagactccgaattctgaggattcatatgatccaatgcgagtggagcagtgtctccgttggaggaaggaggaggttgatctagggtttgcgaattgggatt  20869500                                               ------>ZmHOX2a(2)                                              --------->CCA1(2)                                              <------ZmHOX2a(2)                                             --------->ARR11(3)                                             <---------AGP1 <-----------RAV1(1)                                             <---------ARR14(2)                                             --------->ARR14(2)                                             <---------ARR11(3)                                             --------->AGP1 *TSS                                            <---------CCA1(2)<-----------HVH21        <---------YAB1 ----KAN4(2)                        <---------TOE2(3)  --------->ANAC58            <---------YAB1   < -------------->WRI1                <---------TOE1(3)  --------->ANAC58            --------->ICU4 ---   gttcatttcgacggactccatagcaaaactcaagagttagggtttcagatctaagacaagaaatgtcgcgacttacatgagagagattattatcgaaaac  20869600               --------->LBD16              <---------ANAC55(2)              <------NtERF2              --------->ANAC55(2)             <---------LBD16            <---------ANAC46         <---------ARR14(2)         --------->ARR14(2)     --------->At4g35610                                         <---------DAG2     <---------At4g35610     --------->YAB1       ------------>CBF ------------CBF       ---------->ID1        <---------AHL20(2)  <----------DOF2              <------ ------>ARR11(3) <---------ARR14(2)       ----------->GT1   <-----------GT1          <---------AHL20(2)   gatattgagcagagtcgcggaatttggcccattataagcccaaatagttaaattcaattttcttacacttttagttaagagaatgttttaatttttaaac  20869700                                 <-----------GT1                                 <---------AHL20(2)              <---------MYB59                              <---------ICU4                    <---------ANAC55(2)                             <---------AHL20(2)            <---------AHL20(2)                             --------->AHL20(2)            --------->AHL20(2)                         <---------AHL20(2)                <---------ICU4                         --------->AHL20(2)     --------->AHL20(2)                              <----                      ----------->GT1          --------->AHL20(2)--------->TOE2(3)          <--------                     ----------->GT1       <---------YAB1 <---------ATHB12                  <--------                    --------->DAG2      <---------YAB1  --------->WOX13(1)          --------->YAB1<-- -----GT1          ---------->DOF2     --------->AHL20(2) --------->AHL20(2)  <---------At4g35610<---   cattttgttgataaaaaaaaaaaaagtttaaatatttacatttttataaataaaaaatcaattaatacctaaaaattctaagctaataaaaacagatttt  20869800                            --------->TOE2(3)   --------->AHL20(2)     <---------TOE2(3)   <---------AHL20(2)     <---------TOE1(3)                                   <---------ARR11(3) -------GT1           --------->TOE2(3)                                       --------->ARR11(3) -ARR11(3)            --------->YAB1                                    --------->CCA1(2) -GLK1(2)       --------->ANAC58                                    <------ZmHOX2a(1) -------TOE2(3) --------->ANAC58    <---------ARR14(2)       --------->ARR11(3)     ------->TEIL --------GT1    --------->ANAC46    --------->ARR14(2)       <---------ARR11(3)--------->CCA1(2)  <--   aacatttaaatttttaaaacgcaatgttaatgttagtgtatatgctaattttgtctaatataagattttaggagaaatgagatatgaaactggtctccaa  20869900                                                                                                  <--                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                             <-------                                                --------->TOE2(3)       --------->AHL20(2)   <-------                                               <---------ICU4           <---------AHL20(2)   -------- <---------MYB46(3)  ------->TEIL              --------->YAB1   <---------YAB1               <------- --------DOF2       <---------GLK1(2)        <-----------GT1  <---------ICU4                 <-------   ctttggttcacatctatgcattgaatctcaaatattctagcatgtttaaacattatcagcctatttatgactaattttttgtttttctgactatttcgta  20870000                                                   <---------AHL20(2)                                                   <---------YAB1                                                  <---------AHL20(1)                                                <---------TOE2(3)                                                <---------YAB1                                               <---------AHL20(2)                                               --------->AHL20(2) -------ANAC46                                 --------->YAB1                 --------->MYB52(1) -->TEIL                                     <---------YAB1                   <---------DOF5.7(2) ---->ARR14(2)                             <---------ICU4                <---------AHL20(2) -----ARR14(2)                             -------->ATHB1                --------->AHL20(1) ---->ARR11(3)                            --------->AHL20(2)             --------->AHL20(2) -----ARR11(1)                            --------->ICU4                --------->AHL20(2) ----ARR14(1)                             <---------YAB1             --------->ICU4 ----CCA1(2)                              --------->AHL20(1)     <----------ID1 --ANAC55(2)                           --------->AHL20(2) --------------->AGL15 --ANAC46                              <---------AHL20(2) <---------------AGL15 ->ANAC55(2)                           --------->AHL20(1)----------------->AGL1                  ---- --ANAC58                             --------->AHL20(2)<---------AHL20(2)    <-----------GT1  <----- --ANAC58                   ------->TEIL  <---------AHL20(2)     ----------->GT1               <-----   tcttggaaaaatacacaaatatactcagtgtatgtcaaaaaaaaattattaatattatttcattttagggaaaaattaattaacgacggtcttcaattcg  20870100  Previous    Next  AGI:  At5g51300.1    Description:  splicing factor-related. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08620.1); similar to KH domain-containing quaking protein, putative [Arabidopsis thaliana] (TAIR:AT1G09660.1); similar to hypothetical protein OsJ_013989 [Oryza sativa (japonica cultivar-group)] (GB:EAZ30506.1); similar to hypothetical protein OsI_015099 [Oryza sativa (indica cultivar-group)] (GB:EAY93866.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain Nucleotid Range:  from: 20866123    to: 20869560    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g51310.1    Description:  gibberellin 20-oxidase-related. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G23340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75307.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 20870080    to: 20871944    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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