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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                           <-----------RAV1(2)
                                         ------>NtERF2
                                         ----------->RAV1(1)
                                        --------->ANAC46
                                      ------>ZmHOX2a(1)             ------->GAMYB <-------GAMYB
                                     --------->TOE2(2)          --------->WRKY38(1)<---------MYB52(1)
                                     --------->TOE1(2)          --------->WRKY12<---------TOE2(3)
                                    =================RAV       <---------MYB52(1)----------->GT1
                                    ----------->RAV1(2)        --------->DOF5.7(2)--------->At5g28300
       <-----------HVH21          --------->ARR11(3)       <---------At5g28300  <---------TOE1(3)
  <--------P       --------->LBD16--------->ARR14(2)      <---------WRKY38(1)  <---------At5g28300
-------->LBD16--------->At4g35610 --------->GLK1(2)      ----------->HVH21   <---------ZAT14
--------ANAC46<---------GLK1(1)   <---------ARR14(2)    <-----------HVH21    <---------ARR14(2) <---
-------LBD16  --------->ZAT2 --------->ANAC58         --------->LBD16    <------NtERF2    ------>ZmHOX2a(1)
-->ZmHOX2a(1) <---------ZAT2 --------->ANAC58       <---------LBD16--------->DEAR3(2)--------->KAN4(2)
 
tccgggtaagggtcacgagctccgaagtcaccaagaaaatcctgcgccagattagaccgggtcaccgttaaccggccgagtttacggttattcctactta  20796500
                                                                                                 ---
                                                                                                ----
                                                                                               <----
                                                                                               <----
                                                                                               <----
                                                                                               -----
                                                                                               <----
                                                                                               <----
                                                                                               <----
                                                                                          <---------ANAC58
                                                                                          --------->ANAC55(2)
                                                                                          --------->bZIP60(1)
                                                                                          <---------bZIP60(1)
                                                                                          <---------bZIP60(2)
                                                                                          <---------ANAC58
                                                                                          <---------TGA1a
                                                                                          --------->TGA1a
                                                                                          <---------ANAC55(2)
                                                                                          <---------ANAC46
                                                                                          --------->O2
                                                                                          <---------O2
                                                                                         -----------
                                                                                        <---------TGA2(2)
                                                                                       ----------->TGA1
                                                                                    --------->ICU4
                                                                                <------NtERF2 ------
                                                    --------->ALFIN1           <---------MYB46(3)<--
                                                   <------ZmHOX2a(1)----------->GT1 <---------YAB1
                      <---------TOE1(3)          --------->ALFIN1  --------->ARR11(3)<---------ICU4
             ------>MYB46(1)                    <------ZmHOX2a(1)  <---------ARR11(3)--------->YAB1
             ------>MYB83                 <---------LBD16       <------NtERF2 <---------DEAR3(1)----
        <-----------GT1 <------ZmHOX2a(1)--------->MYB52(1)    --------->LBD16<---------ANAC46------
 ----------->GT1      <---------TOE2(3)  <---------WRKY18(1) <---------LBD16 <---------ABI4(1)<-----
--------->ALFIN1  <----------DOF2       --------->WRKY12  <------ZmHOX2a(1)--------->ANAC46 --------
--------RAV1(2)   <---------DAG2        ----------->HVH21----------->HVH21<---------LBD16-----------
 
caggtggtaataaaccgaacactttaaggattgagcgagaaggttgacggaggaggagggaggacgcggagatgttacacggcggtgatgatgacgtggc  20796600
       --------->At4g35610
       <---------ZAT2
--->NtERF2
-->NtERF2
-----ANAC58
-----DEAR3(1)
-----RAP2.6(2)
---->ATERF1(2)
-----ANAC58
-----ATERF1(2)
-----ANAC46                                                                                     <---
>bZIP910(1)                                                                                     <---
--->ATERF1(1)                                                                                   ----
----NtERF2 ----------->ARR10                                                      ----------->GT1 --
----->RAP2.6(2)                                                             --------->ZAT14     <---
--->RAP2.6(3)         --------->ZAT14                                       <---------ZAT14     <---
-NtERF2--------->ZAT2 <---------ZAT14                                   --------->AtMYB61      -----
->ALFIN1 ----------->GT1------->TEIL     <---------AtMYB61             <---------ZAT14      <-------
>STF1  <---------At4g35610      --------->CCA1(2)                      --------->ZAT14   *TSS  <----
 
ggccatcgggagctgtgatttgctctgtaccgaagataagagttttggtttttagagagcgaaacgattttcagaccactggactgagttaaatgggtga  20796700
                                                             <-----------TGA1
                                                            --------->ANAC55(2)
                                                            --------->ANAC46
                                                            --------->ANAC58
        <---------ATHB12                                    <---------O2
        --------->ICU4                                      --------->O2
   <---------ANAC55(2)                                      --------->bZIP60(2)
   --------->ANAC58                                      <---------REM1(2)
   --------->ANAC55(2)                                ================bZIP_DOF
   --------->ANAC58                                 ------>MYB46(1)
   --------->ANAC46                                 ------>MYB83
   --------->O2                                   <---------MYB59
   --------->bZIP60(2)                            --------->DREB2C(2)
   --------->ANAC55(1)                           --------->DEAR3(2)
<------NtERF2                                  <---------PCF2<-----------HVH21
------bZIP60(2)                                --------->TCP15(1)<---------ANAC55(2)
------At4g35610                            <---------LBD16  --------->ANAC55(1)
----->At4g35610                           <---------ANAC46  --------->ANAC58                    ----
------->ALFIN1            --------->PCF2  <---------ANAC58  <---------TGA1a                    >>>>>
------ANAC58        --------->MYB52(1)    <---------ANAC58  --------->TGA1a                   ------
------ANAC58   <---------ATHB12        <----------DOF2<----------DOF2                        <------
---->ALFIN1    --------->ICU4          ===============================bZIP_DOF           <---------ANAC58
----HVH21    <---------ICU4   ------------>CBF --------->TCP20----------->HVH21          <---------ANAC58
-----AtMYB61 --------->YAB1 --------->MYB46(3)----------->HVH21  --------->ANAC55(2) <------------CBF
 
ggtgccacgtaatcactaatgactaatgggaaccacaataaactttcgtgggaccgactttacacgtcacgttttaatctgagaagcccattgggtttga  20796800
                                                                     --------->TOE2(3)
                                                                     <----------DOF2
                                                                  <---------ARR14(2)
                                                                  <---------ARR11(3)
                                                                  --------->ARR14(2)
                                                                  --------->ARR11(3)
                                                                 <---------GLK1(1)
                                                                 <---------CCA1(2)
                                                         ------>ZmHOX2a(1)
                                                         <---------DAG2
                       ------->TEIL                      <----------DOF2
              <---------DAG2                            --------------->AGL15
              <----------DOF2                           <---------------AGL15
           ==============================================================MADS_MADS
           <---------------AGL15                ---------->DOF2<---------ANAC58
           --------------->AGL15        --------->ICU4 ----------------->AGL1           ------>MYB83
          --------->ZAT18               <---------YAB1 <-----------------AG             ------>MYB46(1)
          <---------ZAT18             --------->YAB1   ----------------->AG           --------->AtMYB61
  <----------DOF2      <---------ARR14(2)      --------->LBD16 <---------ANAC58      <---------HSFB2a(1)
----------->AtSPL8     --------->ARR14(2)<---------ICU4<-----------------AGL1        --------->HSFB2a(1)
>>>>ARR2  <-----------------AGL1  <---------ARR11(3)   <-----------------AGL2    <---------MYB52(2)
--->ATHB12<-----------------AGL2  --------->ARR11(3) --------->ARR14(2)--------->AHL20(2)
---YAB1   ----------------->AGL1<---------TOE2(3)    <---------ARR14(2)<---------AHL20(2)      <----
 
ttgtacttttgtgtccacttttggtgaatctacttaagatttcataattccgaaagtatcctttttgggtatctttaattacaaacaaaccttcccttct  20796900
                                                                                         <---------ZAT14
                                                                                         <---------ZAT18
                                                                                         --------->ZAT14
                                                                                         --------->ZAT18
                                                                  --------->CCA1(2)    <-------PIF5
                                                        ------>NtERF2                  ------->PIF5
        --------->ANAC58                     --------->ANAC46    --------->ARR11(3)   --------->LBD16
        --------->ANAC58                   <---------DOF5.7(2)   <---------ARR11(3)   <---------DEAR3(2)
     *TSS                               <---------DAG2<------NtERF2                  <---------DEAR3(1)
--------->LBD16                     ---------->ID1  <---------DEAR3(1)               <---------DREB2C(2)
------DOF2            --------->LBD16   <----------DOF2--------->DEAR3(1)    ---------->DOF2
 
ttcccgatttcaagccctaaaattccgagacttctgtttctcgctttaacgacagtcgccgagtgagagatatagagagagaaagatgccggtgcacgat  20797000
                                                                                                   <
                                                                                                   <
                                                                                                   -
                                                                                                   -
                                                                                                  --
                                                                                                  --
                                                                                                  <-
                                                                                                 ---
                                                                                                 <--
                                                                                                 ---
                                                                                                 ---
                                                                                                 ---
                                                                                                 ---
                                                                                                 <--
                                                                                                ----
                                                                                                ----
                                                                                                ----
                                                                                                ----
                                                                                                <---
                                                                                                ----
                                                                                                ----
                                                                                                ----
                                                                                               <----
                                                                                               <----
                                                                                               -----
                                                                                               -----
                                                                                               <----
                                                                                               -----
                                                                                              ------
                                                                                              ------
                                                                                              ------
                                                                                              ------
                                                                                             -------
                               --------->LBD16                                               -------
                              <---------HSFB2a(2)                                            -------
                              <-----------RAV1(2)                                            -------
                              <---------------AGL15                                          <------NtERF2
                            =================HOX2a_HOX2a      <---------------AtSPL8         -------
                           <------ZmHOX2a(2)             --------->ANAC55(1)                 <------
                          --------->ARR11(3)             --------->ANAC55(2)                 -------
                         --------->GLK1(1)               --------->ANAC58                  ---------
                         <---------GLK1(1)               --------->ANAC58                <---------HSFB2a(1)
                   --------->ALFIN1                      <---------ANAC55(2)             --------->HSFB2a(1)
                 <---------ANAC46                        --------->ANAC46                --------->HSFC1(2)
               <---------ZAT14--------->HSFB2a(2)     <---------ARR14(2)         <------NtERF2<-----
               --------->SPL7----------------->AGL1   --------->ARR14(2)        --------->LBD16-----
             <---------SPL7==================HOX2a_HOX2a<---------LBD16        <---------ANAC46<----
            --------->ALFIN1------>ZmHOX2a(2)         --------->ARR11(1)       <---------DEAR3(1)---
          <---------ANAC46<---------ARR11(3)     --------->At4g35610          <---------LBD16-------
          <------------------SPL14    <------ZmHOX2a(1)--------->CCA1(2)    --------->ANAC46<-------
 
gagcaagagcatgaggtgtacggtggagagatcccagaagaggaagaaggtgagatggatacggaagagtacgaagaacacggcggagaagaaggtgccg  20797100
    --------->At4g35610
    <---------At4g35610
  <------NtERF2
 --------->LBD16
--------->DEAR3(1)
------NtERF2
---------LBD16
-------->ATERF1(1)
-------->RAP2.3(1)
------->ABI4(1)
---->NtERF2
--------ATERF1(1)
------>RAP2.3(3)
-------DEAR3(1)
------>RRTF1(3)
------>RRTF1(2)
------>RAP2.3(2)
------>DEAR3(1)
-------ATERF1(2)
----->ORA47(2)
----->RAP2.3(1)
----->ERF1
----->DEAR4(2)
---NtERF2
----->ATERF1(1)
----->RAP2.6(1)
----->RRTF1(1)
-----RAP2.3(1)
-----DREB2C(1)
---->ABI4(1)
->NtERF2
-----ATERF1(1)
---->DREB2C(1)
--->RAP2.3(3)
--->RAP2.3(2)
--->ATERF1(2)
--->DEAR3(1)
-->RAP2.6(1)
-->DEAR4(2)
-->ATERF1(1)
-->ERF1
-->RAP2.3(1)
---RAP2.6(2)
-->ORA47(2)
>ALFIN1   <------ZmHOX2a(1)
----ATERF1(2)
---->At4g35610
-----At4g35610                             <---------YAB1             <-----------GT1              -
------>ATERF1(2)                 --------->STY1(1)                <----------DOF2                  <
-->DEAR3(2)        ----------->RAV1(2)   ----------->GT1       <---------AHL20(2)                <--
--ATERF1(1)       ------->TEIL--------->ZAT6                   <-----------GT1                  <---
 
ccgccggagatgaggagcttgaacctggctctagctctagggtattgtgattcttcgatctataatttacttttatccaattgagactcttcttattttt  20797200
                         <---------WOX13(1)                                                   ------
                       --------->ATHB12                                                      <------
                   <---------ANAC58                                                          <------
              --------->MYB52(2)                                                 --------->ZAT2
            <---------MYB52(1)                 --------->CCA1(2)                --------->GLK1(2)
-------------->AGL15  <---------YAB1          --------->ARR14(2)           <------ZmHOX2a(1) <------
---------------AGL15<----------DOF2           <---------ARR14(2)  <------ZmHOX2a(1)      <----------DOF2
-------At5g28300   <---------ANAC58 <------ZmHOX2a(1)  --------->MYB52(1)<---------TOE2(3)   <------
--------GT1<-------GAMYB>>>>>>>>>ARR2        <------ZmHOX2a(1)  <---------TOE2(3)--------->At4g35610
 
tactgtatttagtctgttatttgctttgattgtttgataggacttggaggatatgaagaaacgaattaaggagattgaggaagaagctggagctttgcgt  20797300
                                                                         ------->TEIL
                                     <---------TOE2(3)               ----------------------->TaNAC69(2)
                          <---------ANAC58                        --------->ARR11(3)
                          <---------ANAC58                  --------->ANAC58          <---------At4g35610
    --------->ANAC46  --------->CCA1(2)                     --------->ANAC55(2)       --------->At4g35610
    --------->ANAC58 --------->ARR11(1)                     --------->ANAC55(1)       <---------ZAT2
    --------->ANAC58 --------->ARR11(3)                     <---------ANAC55(2)    <---------At4g35610
--->LBD16            --------->ARR14(2)                     --------->ANAC58      --------->ANAC46
---ANAC58            <---------ARR14(2)        --------->ICU4--------->TOE2(3)   <---------ZAT18
---AtLEC2            <---------ARR11(3)  --------------->AtSPL8   <---------ARR11(3)  --------->ZAT2
---ANAC46          ----------->ARR10 <---------TOE1(3)      ----------->GT1      --------->ZAT18   -
---ANAC58        ---------->DOF2  --------->WRKY18(1)      <-------TEIL <---------CCA1(2)          -
 
gaaatgcaagccaaggctgagaaagatatgggtgctagtcaaggtttgtacttattaactgatacgtaaaatcttgaatctttgtgcgcagcttcacatt  20797400
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AGI:  At5g51110.1   
Description:  similar to dehydratase family [Arabidopsis thaliana] (TAIR:AT1G29810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62291.1); contains InterPro domain Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533)
Range:  from: 20795358    to: 20796690    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g51120.1   
Description:  ATPABN1/PABN1 (polyadenylate-binding protein 1); RNA binding / poly(A) binding / protein binding. similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G10350.1); similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G10350.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62247.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 20796906    to: 20798756    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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