Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>ZmHOX2a(2)  ----------->HVH21                 --------->ANAC46 <---------MYB52(1)             <-----------HVH21 -------->LBD16                <----------DOF2 -------LBD16          --------->ANAC55(2) --->ZmHOX2a(2)        ----------->GT1 -----ARR14(2)         <---------ANAC55(2) ---->ARR14(2)         --------->At4g35610 >At4g35610          <-----------RAV1(2)                                   ----------->GT1 -At4g35610       --------->bZIP60(1)                                    ----------->GT1 -RAV1(2)         <---------bZIP60(1)                        --------->ANAC46            <---------YAB1   tccggtgatccatgtttttgacatcaggtaactctttcacagcatcaatggctctctgtttacacactatgtaagaagtgaaaattggattgtgattgta  20756200                     <-------TEIL           <---------ATHB12                  ----------->GT1          --------->ANAC58                  <------MYB46(1)    ------>NtERF2---------->DOF2                  <------MYB83       ----------->RAV1(1)                 <---------------AtSPL8    --------->ANAC58                 --------->MYB111(2) <---------RAP2.6(3)                 --------->MYB46(2) --------->RAP2.6(2)                 --------->MYB59    --------->DEAR3(1)                 <---------MYB46(3) >>>>>>>>>>DREB1A                 --------->MYB111(1)>>>>>>>>>>DREB2A                <---------MYB55(1)  <---------ETT(1)                             --------->ARR14(2)                <--------P        <---------At4g35610                            <---------ARR14(2)             <---------MYB46(3)   --------->At4g35610     --------->At4g35610<---------LBD16       <-            <---------ANAC46    --------->SPL7   --------->YAB1           ---------->DOF2         ---   ttgttgtttcacttgtgggtaggtacaatgctcgtaagccgacacaatcaataaaagcgcatcagaaacgagtgtttaaagcggaatggcattactctca  20756300                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              <---------AGP1                                              --------->ARR14(3)                                              <---------ARR11(3)               --------->ARR14(2)             --------->ARR11(3)               <---------ARR14(2)             <-----------ARR10               <----------DOF2               <---------ARR11(3)             <---------ARR14(3)        =================bZIP_DOF               <-----------ARR10       <---------ZAT14                  <---------TGA1a               <---------ARR11(1)      --------->At4g35610              --------->O2              <---------CCA1(2)        --------->ZAT14                  --------->TGA1a      <-------        --------->At4g35610   --------->ATHB12<---------ARR14(2)        <---------O2     <---------CCA1(2) --------ALFIN1--------->ARR11(3)      --------->ZAT18 ------->TEIL  ----------->HVH21 <---------ICU4 ------>MYB46(3)         ------>ZmHOX2a(2)    --------->ARR14(2) <---------At4g35610  ------>ZmHOX2a(1)   accacttctcatctccatatcttctgatctcaacattggtctgcacaagatctcatgaaacttttgaagctctcacatgtctttgttcctcatttcttat  20756400                   <---------DEAR3(1)                   --------->ALFIN1                 --------->ZAT2                 <---------At4g35610                 --------->At4g35610                 <---------O2               <-----------RAV1(2)              <-------TEIL             <-----------HVH21        <-------TEIL             XXXXXXXXXXXXXXXXXXXX>MIR844*      --------->ARR14(2)      <-----------GT1                          <---------ICU4      <---------ARR14(2) --------->ARR14(2)                           <---------YAB1     <------ZmHOX2a(1)<---------ANAC46  --------->YAB1     <---------TOE2(3)   <---------TOE2(3) <------NtERF2--------->ANAC46         --------->MYB59    <---------TOE1(2)   <-- --YAB1--------->CCA1(2) <---------ARR14(2)       --------->TOE2(3) --------->YAB1               ----   tatctgaggatacaggttcaggtggcgaatatttatcagccatcataccaattcttagttttaggtataaacatcattcccatgtattaaactctcaatt  20756500                    --------->ZAT6                   <---------YAB1           --------->TOE2(3)          ----------->GT1         <-------TEIL       <---------ARR14(2)                                                             <------NtERF2       <---------GLK1(2)                                                             <------NtERF2       --------->ARR14(2)                --------->MYB46(3) <---------YAB1           --------->LBD16      <------ZmHOX2a(1)    --------->ZAT14                  ----------->TBP          ----------->GT1    <---------TOE2(3)      <---------ZAT14                --------->YAB1            --------->RAP2.6(2)  ---------->DOF2  <---------TOE2(3)  <----------ID1     <---------YAB1            <---------LBD16 -------YAB1<---------MYB52(1) ---------->DOF2  --------->TOE1(2)            <----------DOF2 ----->AHL20(2)   <-----------GT1  ---------->DOF2    <---------YAB1        <---------DAG2    -------   tttataaaggattcgttaattaacattactgcagaaagaaagaacaaacacctaagattattataaaaaaaaactcaaccttttggccggaaaaaaaaac  20756600                                                  <---------GLK1(2)                                                  <---------ARR14(2)                                               <---------ANAC58                     --------->ARR14(2)          ---------->DOF2                      <---------ANAC46                     --------->GLK1(2)       --------->TOE2(3)                      <---------LBD16                       <---------ARR14(2)     --------->ARR11(3)                      *TSS --------->ARR14(2)         <-------TEIL     <---------ARR11(3)                ------------>CBF                   <---------At4g35610     --------->GLK1(2)         <-----------TGA1<---------ANAC58           --------->At4g35610 <------ZmHOX2a(1)             <-----------HVH21--------->LBD16 --------->ANAC46    <-----------ARR10 -->MYB52(1)         <----------DOF2  --------->TOE2(3)         --------->TOE2(3)  <---------GLK1(2)<   agaggaaaatctcaaagttctgtcttttactctcgtcattcgtcaatttgcggattttgttctcaccctcaatttgagatgcagagaatctccattaatg  20756700              --------->GLK1(2)             --------->ARR11(3)             <---------GLK1(2)             <---------ARR14(2)             --------->ARR14(2)            --------->HSFB2a(1)            <---------HSFB2a(1)            <---------HSFC1(2)            --------->HSFC1(2)           ----------->ARR10                                --------->At5g28300       --------->YAB1                       <---------At4g35610  <---------ICU4  --------->LBD16                           --------->At4g35610 --------->ICU4 --------->ANAC46                 <-----------TGA1    ----------->HVH21 <---------HSFB2a(2)          <----------DOF2        --------->AtMYB61         ------->TEIL --------->HSFB2a(2)  <---------ALFIN1--------->At4g35610  ----------->GT1    <---------CCA1(2) ---------LBD16     <-----------HVH21 <---------At4g35610  --------->LBD16<----------DOF2         <--   tctccggaatcagaagattctgcatcacctctctttcgtcatcttccgcttcaaacctcaccggtaaaaatttcatctttgtatctaaatcagacatttc  20756800                                                          --------->WOX13(1)                                                        <---------YAB1                                                      --------->YAB1                                                     <---------YAB1                                                   <---------ICU4                          <----------DOF2          --------->YAB1    <---------YAB1  <---------DAG2    <-------TEIL          <---------DAG2          --------->ICU4     <---------AHL20(2)-------------- -------LBD16          <-----------GT1 <---------ANAC46--------->TOE2(3)             <----------DOF2   tctggattcatgttacttagggtttttacttttttggtctggggtttatctaattatcatcaatctccagttttattgtttacatagctttttgggtttg  20756900                                                                  <-------TEIL                                                               <--------ATHB1                                                               --------->ATHB12                                            <---------MYB46(3) -------->HAHB4                                           <--------P         <---------YAB1         <------ZmHOX2a(2)                   <---------DAG2         <-------GAMYB       --------->ICU4        --------->ARR11(3)    <----------DOF2<----------DOF2  <----------DOF2         --------->YAB1          <---------ARR11(3) --------->TaNAC69(2)         --------->ALFIN1      <-----------GT1     <----------DOF2--------->TOE1(2)   attcgtctttgaagttgttctctttttgaaaattggggctcttgggttgttttgtcactctataatgattcatgctttcttatgtagatcatgggatgtt  20757000                                                                  ------>ZmHOX2a(2)                                                                 <---------RVE1(1)                                                                 <------ZmHOX2a(2)                                                                --------->ARR14(2)                                                                <---------AGP1                                                                --------->AGP1                                                                <---------ARR14(2)                                                                --------->ARR11(3)                                                               <---------CCA1(2)         <---------ARR14(2)                                                              ----------->ARR10  --------->ANAC46                                                        ------->MYC3             --------->ANAC55(2)                                                        <-------PIF4             --------->ANAC58                                                        <-------MYC3             <---------ANAC55(2)                                                        ------->PIF4             --------->ANAC58                   ---------->DOF2                      <-------MYC2            <-------TEIL                --------->ANAC58                        ------->MYC2            --------->SPL7                --------->AtLEC2                        <-------MYC4          <---------SPL7                --------->ANAC58                        ------->PIF5         <---------ANAC58              --------->YAB1                            <-------PIF5         <---------ANAC58 <------             <---------ATHB12                      --------->ANAC58         <---------------AtSPL8     <---------ARR11(3)             <---------YAB1 --------->ANAC58<----------DOF2       --------->ARR14(2)     --------->ARR11(3)    ------>ZmHOX2a(1)     ---------->DOF2<---------ARR11(3)      --------->GLK1(1)   gaaacaagttcttgaatcatgcaaagctccttcaaattctaaatgtgttcttcaagcacatgctcagatctttaaacttgggtacggaacatatccatct  20757100  Previous    Next  AGI:  At5g50970.1    Description:  WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G19920.1); similar to unknown [Populus trichocarpa] (GB:ABK95770.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 20753563    to: 20756521    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g50990.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT3G62890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83162.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68396.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20756645    to: 20758507    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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