Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ---------->DOF2                                                           <------ZmHOX2a(2)                                                           --------->PCF2                                                          <---------ARR14(2)                                                          --------->ARR14(2)                        ------>ZmHOX2a(1)                <------ZmHOX2a(1)                      -----                    --------->ARR14(2)               <---------MYB52(1)                         -----                    <---------ARR14(2)          --------->ARR14(2)                       --------->At4g35610                    --------->GLK1(2)       --------->ANAC46------>ZmHOX2a(2)       --------->WOX13(1) -------->DOF2  --------->YAB1--------->AtLEC2  <---------ARR14(2)               --------->GLK1(2)   gaaaagtccagtttgcatttagaatcctgttcatgaaaacatgtataccctatctgttaggatcccacaaagtaatgcattagaatcagtcagcaataac  20625100                             --------->ANAC58                                                 <------                         <---------HSFB2a(2)                                              <---------At5g28300              --------->RAP2.3(3)       --------->DAG2   <---------ZAT14               <----------DOF2      --------->ANAC46   --------->HSFB2a(2)         <---------------AtSPL8   --------->TOE2(3) ---->ANAC58--------->At4g35610        ---------->DOF2   --------->ZAT14      --------->TOE1(3) ---->ANAC58--------->ZAT2   --------->ANAC58    <----------DOF2        --------->ANAC46 <-----------GT1   gcatcaacacgacgagcagccattcttcgacaagcttcaaataaagttgtgctatctggtacagtaagagccttacacaaccttagtctctttaccgttc  20625200                  <---------ATHB12                 --------->ANAC58           --------->AtLEC2                 --------->ANAC46 --------->ANAC58                 --------->ANAC58 --------->ANAC58         <----------DOF2     --------->ANAC46   <---------ALFIN1          --------->REM1(1)                                        <---------YAB1   --------->AtMYB61 --------->ANAC58       --------->ANAC58          <---------AHL20(2)     ------>ZmHOX2a(1)  --------->MYB46(3) --------->ANAC58       --------->ANAC58         <---------AHL20(1)     --------- ---MYB52(1)   <---------ALFIN1   --------->ANAC46                  <---------CCA1(2)------->TEIL   tctcaccactcctttccccactcaagcttctacaccaagaaacaacatgcaaacatttacttccaatctcatatattttgaaacatgtatcattcctcag  20625300                                                                                                <----                                                                                                -----                                                                                          <---------ALFIN1                                                                           <---------GLK1(1) --------                                                                 <---------ANAC46         --------->AtMYB61                                                              ------>ZmHOX2a(2)          --------->MYB46(3)                                                              ==================HOX2a_HOX2a  <-------                                                             ===================HOX2a_HOX2a  --------                                                             <------ZmHOX2a(2)           <xxxxxxxxxxx                             <---------ICU4                 <---------ARR14(2)         --------->DEAR3(1)                             --------->ATHB12               <---------ARR11(3)         --------->AtMYB61                            <---------YAB1                  --------->ARR14(2)         <---------ALFIN1                            --------->ICU4                  --------->AGP1 --------->GLK1(1)---------                         --------->ALFIN1                   --------->ARR11(3)        --------->MYB46(3)                        <---------------------WRI1          <---------ARR14(3)       ------>NtERF2                        ------------------>ATHB9            --------->ARR14(3)     --------->MYB46(3)                       <---------ANAC46                    <---------GLK1(1) <------ZmHOX2a(2)  -----                       <---------ANAC58                    --------->GLK1(1)<---------ARR11(3) ------ >TOE2(3)              <---------ANAC58             --------->CCA1(2)    <------ZmHOX2a(1)--------->DEAR3(1)   aaaaatgaagaattggaagagaatggggtgatgattacatggaagaacgagaagatgtgagagatcttcgtgggaggagatcagagccaccaccaccacc  20625400 -----ALFIN1 ---->DEAR3(1) ->DEAR3(1)                             <---------LBD16                      <---------MYB46(3) --ALFIN1                              --------->MYB52(1)             --------->MYB46(3) ->AtMYB61                <---------ANAC46                          <---------PCF5 xxxxxsmallRNA(s)         <---------ANAC58       <------ZmHOX2a(1) <---------SPL7 >MYB46(3)                <---------ANAC58--------->LBD16      ----------->HVH21 ---->AtMYB61      <-----------GT1    <---------WRKY18(1)     ------>ZmHOX2a(1) --->MYB46(3)  <----------DOF2       ----------->HVH21  <----------DOF2<---------ALFIN1    <---------   accttcgttttctgaagcttttttccttccttgaaatgaatgaccggagaaggagagacttttcctcgacggaccaccttggttagccattttcaactat  20625500               <---------GLK1(2)          ------>ZmHOX2a(1)   ------>ZmHOX2a(2)   ==============HOX2a_HOX2a  <------ZmHOX2a(2)  <---------GLK1(1)                               <---------GLK1(2)                          <-------  --------->GLK1(1)                    --------->AHL20(2)                              --------->ARR14(2)  ===============HOX2a_HOX2a       --------->YAB1 --------->ARR11(3)                   <---------ARR14(2) <---------ARR14(2)                --------->AHL20(2) <---------YAB1                  <----------TaMYB80 --------->ARR14(2)             --------->YAB1    <---------ARR14(2)               <-------TEIL --GT1 ------>ZmHOX2a(1)     <----------DOF2--------->YAB1 <---------AHL20(2)<---------At4g35610   tccgatctcctccttcaaattctctgaaacactttaataaaaaaaatcatcagattttgatttttttttttttttttgcagcaaatgcatattcgaattg  20625600                                                                                                   <-                                                                                   --------->ARR14(2)                                                                                   <---------ARR11(1)                                                                                   <-----------ARR10-       ------>MYB83    <---------HSFB2a(2)                                         ------->TEIL  <---       ------>MYB46(1) --------->HSFB2a(2)            ---------->DOF2              <---------ARR14(2)     <---------MYB59  <---------LBD16          --------->ANAC46                   <---------CCA1(2)--   -------->P       <----------DOF2          <-----------GT1                      <---------ARR14(1)- -----CBF  --------->GLK1(2)           ------------>CBF               --------->TOE1(2)          ----   gaacttaccaaataatctttctctttcggaaaatttttgatatcaattcacagaataaaagagaaattcaaaactgggaatttcgaatcttcacttcgat  20625700   ------>ZmHOX2a(2)                    ---------->DOF2                                  ---------->DOF2 --------YAB1                   --------->ANAC58                             --------->LBD16 ------->HAHB4                  --------->ANAC58                            <---------HSFB2a(2) ------ICU4                  <---------ZAT18                                --------->HSFB2a(2) ------->ICU4                --------->ZAT18                               <---------ANAC46 -------->ATHB12         --------->ALFIN1                        <---------AHL20(2) --------->WOX13(1) ----->YAB1    --------->ARR14(2)  <------ZmHOX2a(2)<---------TOE1(2)      <---------LBD16         <-   aatgatcgacgatttcgaatcgcctagttggggcacgatcgataatgcagttcgaaggaattggaattttttttgtttctgggaatcaatcgaaagaaat  20625800                                                              --------->ATHB51                                                              <---------ICU4                                                              <--------HAHB4                                                         --------->AHL20(2)                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                     --------->AHL20(1)                                                     <---------AHL20(1)                                                  -------->HAHB4                                                  <--------ATHB1                                                  --------->YAB1                                                  --------->ATHB51                            <------                                                  <---------ICU4                             --------                                                  <--------HAHB4                            ---------                                                 <---------YAB1                            <---------ANAC46                                                 --------->ICU4  --------->AHL20(2)        <---------ANAC58                           --------->ANAC58      <---------ATHB51<---------AHL20(2)        <---------ANAC58              ---------->DOF2        <-----------RAV1(2)<---------WOX13(1)              --------->GLK1(2)            --------->ANAC58   --------->MYB52(1)--------->AHL20(2)  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ANAC58  ---------->DOF2  --------->YAB1 --------->YAB1            <---------ARR14(2)       ---------->DOF2     --------->ANAC58----------->GT1   --------->AHL20(2)         --------->ARR14(2) --------HSFB2a(2)       ---------->DOF2  <------ZmHOX2a(1)  --------->ICU4        ---------->DOF2   tttggaagagaaagacgaaaggagagggaaagcaaagggccagaggagataataattaattgaataattaaaaaaaaaaaaaaaaaaaagaatccgtggt  20625900                                                                                                  <--                                                                                          --------->SPL7                               --------->ANAC58                                       --------->LBD16                               --------->ANAC58                   <---------DEAR3(1) <---------LBD16                            --------->MYB46(3)         <---------ARR14(2)           <---------LBD16                        <---------MYB52(1)             --------->ARR14(2)          <---------ANAC46  <---------DAG2   --------->GLK1(2)       --------->GLK1(1)  ------>ZmHOX2a(2)   <---------REM1(2) -  <----------DOF2  --------->ARR14(2)     --------->ARR14(2) <------ZmHOX2a(2)--------->ANAC46    --- ---MYB46(3)       <---------ARR14(2)     <---------ARR14(2)<---------ARR14(2)--------->ANAC58 ------ ->ALFIN1         --------->WOX13(1)      <---------GLK1(2) --------->ARR14(2)--------->ANAC58<------ >LBD16       <-----------GT1  --------->ANAC46       <---------GLK1(1)     <-----------GT1   -------   ggaacttttcttcattttgccaatctgttaaccacgaaaatacagatttgcccttggtatccgatcgggctgtgagtatcacgctacgcgggaacgacga  20626000  Previous    Next  AGI:  At5g50640.1    Description:  CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. similar to CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G50530.1); similar to CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79772.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68312.1); similar to unknown [Populus trichocarpa] (GB:ABK94323.1); contains InterPro domain Cystathionine beta-synthase, core (InterPro:IPR000 Range:  from: 20622444    to: 20625490    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g50645.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G50540.1) Range:  from: 20625668    to: 20626009    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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