Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------MYB52(1)<---------MYB52(1)                                      ---------->DOF2      --------->ARR14(2)                            <---------ZAT2    --------->DOF5.7(2)       ------>NtERF2               -                            --------->At4g35610            <---------ARR14(2)                       -                            <---------At4g35610         --------->LBD16 ----------->RAV1(1)       <--                       --------->ANAC58     --------->MYB52(2)----------->GT1                     <--            --------->ARR11(3)----------->GT1<-------GAMYB --------->GLK1(2)                      ---       <---------ZAT6  --------->ANAC58    <-------TEIL--------->LBD16 --------->LBD16            ---    <--------P       --------->MYB52(1)--------->DAG2 <---------LBD16  <---------ETT(1)         <----   caactggtagagtttatcttgagaaacggaagctgtttaaaaaagttcgttatctcccccgaatccgttaatcccgacaaaaaatatgagatgatttagg  20476100                                  <---------ZAT2                                  --------->ZAT2                              <-----------HVH21                           <---------TGA1a                           --------->TGA1a                           <---------O2                           --------->O2                           --------->ZAT2                           ================================bZIP_DOF                           <---------ZAT2                           ----------->RAV1(2)                          ------>MYB46(1)                          ------>MYB83                        --------->DEAR3(1)         <---------ANAC46 -------->P         <---------ANAC58<---------ALFIN1         <---------ANAC58--------->MYB55(1)   <---------bZIP60(2)  <---------MYB55(2)  <---------TOE2(3)     --------->MYB46(3) <---------TGA2(2)      <---------MYB111(2) ---------->TGA1    --------->WRKY38(1) ---------->HVH21  --------->DOF5.7(2) -------At4g35610<---------ANAC58 --------->At4g35610                 --------->ZAT18 -------ZAT2 ========================MYC_MYB                          <---------ZAT18         <------ ------>At4g35610<---------ANAC58 <---------At4g35610                 --------->ZAT14   <---------MYB52(1) ------>ZAT2--------->REM1(2)----------->HVH21                        <---------ZAT14 <---------MYB46(3) --ZmHOX2a(1)<--------P--------->ANAC46         ---------->DOF2    --------->YAB1 <---------YAB1 ----   agctgacgttgtcgtgtaggcgttcacccacctgtcagcttgcattcgactaaagtcagacatgttcaatagtgaacttgcattttgtttgttagtcttt  20476200                                                                        ----------->GT1                                                                  <---------ARR14(2)                            ------->TEIL                          --------->ARR14(2)                            --------->ARR14(2)                   <------ZmHOX2a(1)                            <---------ARR14(2)      <----------DOF2    <---------TOE2(3)               <---------ANAC58                     --------------->AGL15                     <------   <---------AHL20(2) <---------MYB52(1)            <---------------AGL15                 <----------DOF2 ----DOF2      <---------ANAC58                    <-----------------AGL3       <----------DOF2------ ----->YAB1<----------DOF2 <---------CCA1(2)       <-----------------AG<---------TOE1(3)  -----------   gatattatatggtctttgcttatcgttttgtatcttcactctcttgacatctctctttattaggctaggatttgaggttaaactttcattttctttgaat  20476300                                                                                --------->TOE2(3)                                                                          --------->YAB1        =====                                                                          <---------ICU4        =====                                                                         <---------YAB1         -----                                                                         --------->ICU4         -----                                                                       ------>MYB46(1)          -----                                                                       ------>MYB83             <----                                                                     --------->TOE2(3)          <----                                                                  ------>MYB46(1)               -----                                                                  ------>MYB83  =====================                                                                <---------MYB111(1) <---------TOE2(3)                                                                <---------MYB46(2) ==================     --------->MYB52(1)                                         <---------MYB59 <----------DOF2 ----- --------->ZAT6                                              <-----------GT1    --------->TOE1(3) ---CCA1(2)                                              --------->AHL20(2)  <-----------GT1    <---- ->TEIL                                               ----------->GT1<---------MYB59<---------TOE1(3) ---------->WRI1                                 <----------DOF2--------->AtMYB61  ---------->DOF2  <   ctttcactaactgggcttctctactgctacttacttatagatgggtttcaactttcaagttaaataccaaacctaattataactttaaagtttgtctcac  20476400 ==========bZIP_DOF ==========bZIP_DOF ---->ANAC58 ---->TGA1a ---->O2 -----O2  <---------AHL20(2) -----TGA1a                                                           <---------ANAC58          ----- ---->ANAC55(2)                                     --------->ZAT2    <---------ANAC58          <---- =====bZIP_DOF                                      <---------ZAT2    <---------RAP2.6(2)    <------- =====bZIP_DOF----------->GT1              ---------->DOF2            <---------ANAC46      --------- ---->ANAC58<------------CBF     <---------At4g35610--------->At4g35610                  --------->MYB46(3) -----ANAC55(2)               <---------MYB52(1)    <---------At4g35610 <------NtERF2<---------ANAC58 ----------DOF2              <----------DOF2   --------->ALFIN1  <---------AtLEC2    <---------ANAC58   gtcttttgctcttaaattgtgaattttgagcctttagcttcgctagaaagtggaagctgagccatgtccatggcgtcttcttctcttgcgacccaatcct  20476500                                             <---------ARR11(3)                                          <---------MYB59                            <---------ZAT14 <---------CCA1(2)                         ------>MYB46(1)  --------->TOE2(3)        <----------DOF2  ------>MYB83  <---------CCA1(2) <-----------GT1       --------->DEAR3(1) --------->TOE1(3) ->ZmHOX2a(1)          --------->DREB2C(2)<---------DAG2 ------DOF2           --------->DEAR3(2)------->TEIL --ATHB12      <---------CCA1(2)    --------------->AtSPL8      <----------DOF2 >ARR14(2)   ------>ZmHOX2a(1)     <---------ANAC46 <<<<<<<<<TBF1   <----------DOF2         <--------   ttttttcttcctttcctctatctcaccgacttcacttccctgtaccttatcttcttcttcgttcttctttctttcgaaaaccacttagtctctctgctac  20476600                                                                                  <---------HSFB2a(1)                                                                                  <---------HSFC1(2)                                                                              ----------->GT1                                                                           -------->P                                                                          ------->GAMYB                                                                         <---------MYB55(2)                                                                         <---------MYB111(1)                                                                         --------->MYB46(3)                                                                    --------->CCA1(2)                                                                    <------ZmHOX2a(2)                                                                   --------->AGP1 --------->HSFB2a(1)                                                                   <---------ARR11(3)                                        ------>ZmHOX2a(1)          <---------ARR14(2)        --------                                        ===================================HOX2a_HOX2a     --------->ANAC58                                      ----------->RAV1(2) ----------------->AGL1  --------->HSFC1(2)          <---------At4g35610      ------>ZmHOX2a(1)  <----------DOF2    <---------MYB111(2)<--------      <-----------TGA1  ------>ZmHOX2a(1)       ----------->HVH21  --------->ARR11(3)      --------->ANAC58 -At4g35610     <<<<<<<<<TBF1   <-----------GT1 ----------->TGA1   --------->ARR14(2)     --------->WOX13(1)   ttccccttcgtcatcttcttcttctccttccattttcctctcctgcttcgatgacgctttgccagataagatccaacaaccagaaaattcgacaatcaat  20476700                                                                                   --------->TOE2(3)                                                                                   --------->TOE1(3)                                                     --------->ANAC58              <----------DOF2                                                     --------->ANAC58            ------->TEIL                                                  --------->DEAR3(1)          --------->ANAC58                                               <-----------GT1           --------->ANAC58    ---------->DOF2                       --------->ATHB12  --------->TOE2(3) --------->ANAC58 ->YAB1                              <---------------------WRI1          --------->ANAC46 -ATHB12           >>>>>>>>>TBF1     <------ZmHOX2a(1)<---------MYB59    --------->ANAC58          --   agcgaagaaagtgaatgtgaagaagaagatgatgaagaaggagatgatttcacagacccaattcttaaattcttcaagtcacgaactttaacatcagaat  20476800                                                                                      --------->LBD16                                                                                     --------->ANAC58               <---------HSFB2a(2)                                                   --------->LBD16           --------->At4g35610                                                  <---------ATERF1(1)           --------->ZAT2          --------->HSFB2a(2)                          ------>NtERF2           <---------ZAT2   <-----------GT1                                    --------->WRKY12      --------->ARR14(2) <---------GLK1(2)                                     --------->WRKY38(1)      <---------ARR14(2) --------->ARR14(2)                      <---------At4g35610 --------->ANAC46  <---------ZAT14  <---------ARR14(2)                   --------->LBD16        ----------->HVH21  --------->At4g35610    <---------ARR14(2)             ------>ZmHOX2a(1)    <---------At4g35610  --------->ZAT14  --------->GLK1(2)--------->LBD16--------->HSFB2a(1)       --------->At4g35610 ------->GAMYB --------->HSFB2a(2) <---------HSFB2a(2)----------->RAV1(2)  <---------ZAT14     <<<<<< ------->At4g35610 --------->ARR14(2)     --------->GLK1(2)      --------->At4g35610 --------->ANAC58   caactgcagacccagctcgagaatccaaattctccctccagaagaatcgtcgaacttcctggcatttagctccagacttcgctgaccccgaaactgaaat  20476900                                                                                     <---------ARR11(3)                                                <---------ANAC58          <------NtERF2                                                <---------ANAC46        <---------bZIP60(1)                                      ------->GAMYB                     --------->bZIP60(1)                      <----------DOF2--------->MYB46(3)                 <---------DEAR3(1)               --------->ARR14(2)    <---------MYB55(2)                 <---------O2<---------GLK1(1)               <---------ARR14(2)    <---------MYB111(2)                <---------bZIP60(2)               --------->GLK1(2)     <---------MYB52(2)                 <---------ANAC58              --------->GLK1(1)     ------>MYB46(1)                  --------->ALFIN1--------->ARR11(3)              <---------GLK1(1)     ------>MYB83<---------ANAC58 ---------->DOF2    --------->GLK1(1)       ----------->RAV1(2)         ----------->RAV1(1) --------->KAN4(2)<---------ANAC46 <<<<GATA-1  <------ZmHOX2a(1)   --------->MYB46(3)   <----------TaMYB80<---------ANAC58   cgagtctaagcctgaggaatccgtctttgtgacaaaccaacaaacacttggtgtgcatattccattcgaaagtggcgtcgctagggaaatcttggaactt  20477000  Previous    Next  AGI:  At5g50270.1    Description:  F-box family protein. Identical to Putative FBD-associated F-box protein At5g50270 [Arabidopsis Thaliana] (GB:Q9FGR8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G32375.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 20474713    to: 20476099    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g50280.1    Description:  EMB1006 (EMBRYO DEFECTIVE 1006). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76897.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20476464    to: 20478730    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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