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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
MYB52(2)
<----------
ID1
---------->
DOF2
<---------
MYB52(1)
--------->
TOE2(3)
--------->
MYB52(1)
<--------
P
<---------
YAB1
----------->
GT1
------->
GAMYB
<---------
MYB46(3)
<---------
ARR11(3)
--------->
AHL20(2)
-----
<---------
TOE2(3)
--------->
YAB1
--------->
TOE2(3)
<---------
MYB52(2)
-----
----------------
AG
<---------
CCA1(2)
-------->
P
--------->
TOE2(3)
-------
aaaccattttggttagtcccttatatcataatcttagaaggaaaaaaacttaccacaatacattaaacaactaacaaaagcttgaaacttggtatcgaaa
19580500
---
------>
ZmHOX2a(1)
-----
<---------
ARR11(3)
<-----
--------->
ARR11(3)
<-----------
GT1
------>
MYB83
---->
ANAC58
<-----------
GT1
----------->
GT1
------>
MYB46(1)
---->
ANAC58
<---------
ATHB12
--------->
TOE2(3)
<---------
ZAT14
--------
--->
DOF2
---------->
DOF2
<-----------
GT1
---------->
DOF2
------>
ZmHOX2a(1)
---------->
DOF2
gcaagtccagaattagataaaagtccaatctttttaaacatctcttcctcaaagattgtaacttcctatggatgagactgttctaaatcaaagaccaatc
19580600
--------->
At4g35610
<---------
At4g35610
--------->
YAB1
<---------
ATHB12
------>
MYB83
----------->
GT1
--------->
WOX13(1)
<---------------
AGL15
--------->
AHL20(2)
---------->
DOF2
------->
TEIL
<---------
ZAT18
------->
DOF2
<-----------
GT1
<------
ZmHOX2a(2)
--------->
ZAT18
<---
---->
YAB1
--------->
YAB1
--------->
AGP1
------>
MYB46(1)
<---------
AHL20(2)
----
ATHB12
<---------
ATHB12
--------->
At4g35610
--------->
ZAT14
<-------
->
WOX13(1)
--------->
WOX13(1)
<---------
At4g35610
<---------
ZAT14
<---------
YAB1
aaaagagacatcagagaaaccaattaacatcgcagaaagacttcaaatttcagatcaacatgtaccaatcagagaagtgagctaaaaaattatagatttc
19580700
===================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
ARR11(3)
------->
GAMYB
<------
ZmHOX2a(2)
--------->
ANAC46
===============================
HOX2a_HOX2a
==============================
<---------
ARR14(2)
--------->
ARR11(3)
--------->
ANAC58
--------->
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
-------->
P
--------->
ANAC58
<---------
GLK1(1)
<---------
ARR14(2)
--------->
DAG2
--------->
ANAC58
--------->
ANAC58
<-----------
GT1
---------->
DOF2
<---------
ARR11(3)
--------->
GLK1(2)
<-----------
GT1
------
YAB1
<---------
ZAT14
<-------
TEIL
--------->
WOX13(1)
<-----------
ARR10
--------->
YAB1
-
--
GLK1(1)
--------->
LBD16
<---------
ARR11(3)
---------->
DOF2
---------->
DOF2
--------->
AHL20(2)
=
ttattacaaatccgagagaagtgaaagaagatccatttcaagatcagtcaaaaaggattgagaatcaaagcaaccctcactaaaataacaagacaagggt
19580800
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
=============
HOX2a_HOX2a
==============
HOX2a_HOX2a
--------->
TOE1(2)
--------->
O2
--------->
ANAC46
<---------
ANAC55(2)
--------->
At4g35610
--------->
ANAC55(2)
<---------
ARR14(2)
<---------
O2
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
TGA1a
--------->
ARR11(3)
<---------
TGA1a
--------->
ARR14(2)
--------->
LBD16
--------->
At4g35610
<-----------
ARR10
--------->
HSFC1(2)
<---------
At4g35610
--------->
ANAC55(2)
--------->
HSFB2a(1)
===================
MYC_MYB
<---------
ANAC55(2)
---------->
DOF2
--------->
DOF2
<------
ZmHOX2a(1)
----------->
RAV1(2)
<----------
DOF2
--------->
ICU4
===================
bZIP_DOF
<---------
ARR11(3)
<---------
WOX13(1)
<---------
YAB1
tttaaagagctcac
gtaggagagatcgtcaagtatcttctgaagcagagacaccaaaaatgaatgacttttgaaacgaataagcgatgattccacaaatt
19580900
<---------
ANAC46
<-------
GAMYB
<---------
ANAC58
<---------
ANAC58
----
<---------
ANAC58
<---------
ANAC46
<---
<---------
ANAC46
<------
MYB46(1)
-------
<---------
ANAC58
<------
MYB83
<-------
MYC3
<-------
TEIL
<---------
MYB46(3)
------->
MYC3
--------->
At4g35610
<----------
ID1
--------->
MYB55(2)
<--------
<---------
At4g35610
----------->
GT1
--------->
ALFIN1
<---------
At4g35610
--------->
ZAT2
---------->
DOF2
<---------
ANAC58
<------
NtERF2
<---------
ZAT2
----------->
GT1
<---------
ANAC58
---------->
DOF2
--------->
At4g35610
<----------
DOF2
----------->
GT1
*
TSS
<---------
MYB46(3)
<----------
ID1
---------
tcttctttagctgcgtgtgaagaagggtaaaaggagaaacagatggat
agacaatgggtgggttgtgtctgcaaagggacatgtaggcagaggcatgtga
19581000
--------->
DAG2
-
---------->
DOF2
--
<------------
CBF
<---
--------->
HSFB2a(2)
<---------
AHL20(2)
<---
<---------
YAB1
<---------
ANAC46
<---------
RVE1(1)
<---
<---------
At4g35610
----------->
GT1
<---------
CCA1(1)
--------->
ANAC55(2)
--------->
At4g35610
<---------
MYB46(3)
--------->
ARR11(3)
--------->
ANAC58
----->
bZIP60(1)
--------->
ATHB12
--------->
AHL20(1)
<---------
ANAC55(2)
------
bZIP60(1)
<<<<<<<<<<<<<<<<<
LFY
<---------
AHL20(1)
<-----------
HVH21
---->
HVH21
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
bZIP60(1)
-
At4g35610
<---------
HSFC1(1)
---------->
DOF2
--------->
bZIP60(1)
>
At4g35610
--------->
HSFC1(1)
---------->
DOF2
<------
ZmHOX2a(1)
<---------
YAB1
--------->
ANAC58
cataagctgataattctagaaacattgggtaaaaagttcaaaagaacccattttctaaggaccctaaagatatttttatgagtatgaagtcacgcgctcg
19581100
<---------
ARR14(2)
<---------
GLK1(2)
--------->
ARR14(2)
--------->
GLK1(2)
--------->
ANAC58
<---------
ARR14(2)
--------------->
AtSPL3
<---------
ARR14(2)
---------->
DOF2
--------->
ANAC58
<---------
GLK1(2)
---------->
DOF2
<---------
REM1(2)
<-----------------
AGL2
<---------
ETT(2)
<------
ZmHOX2a(2)
----------------->
AG
-------->
REM1(2)
--------->
ARR14(2)
----------------->
AGL1
<---------
TOE2(3)
------->
ALFIN1
<---------
ARR11(3)
<---------
DAG2
--------->
ARR14(2)
<---------
TOE1(3)
------
ANAC46
--------->
ANAC46
<----------
DOF2
---------->
DOF2
<----------
DOF2
------
ANAC58
<---------
SPL7
--------->
ANAC46
<-----------------
AGL1
<---------
At4g35610
------
ANAC58
<---------
RAP2.6(3)
--------->
ALFIN1
<---------
LBD16
<----------
DOF2
---
cgtgtagacaaagagccgtactcgcgatctacaaggcacaagtggaacttttccgattctggattctcaaaagcgtcttcttttagatgctttaaggctt
19581200
--
---
<------
--------
<-------
---------
---------
---------
--------->
CCA1(2)
<---------
ANAC58
--------->
YAB1
<---------
ANAC58
--------->
TOE2(3)
--------->
ARR11(3)
<----------
DOF2
<---------
ARR11(3)
------->
MYC3
<---------
ARR11(3)
--------->
YAB1
<----------
DOF2
--------->
ARR11(3)
<-------
MYC3
--------->
AHL20(1)
<---------
ATHB12
<---------
ANAC58
--------->
AHL20(1)
------->
TEIL
<-----------
ARR10
--------->
WOX13(1)
<---------
ANAC58
--------->
CCA1(1)
--------->
ANAC58
--------->
RVE1(1)
------->
DOF2
--------->
YAB1
<----------
DOF2
--------->
RVE1(1)
--------->
ANAC58
--------->
CCA1(1)
aaaagcccaatcacaacaatagtctttgctttgactttacaaaaaaccaaaatatcttaatttgagagacgcacatgaatgaacaaaatatcttgcctaa
19581300
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(1)
<---------
YAB1
----------->
GT1
<---------
AHL20(2)
<---------
ARR14(2)
<---------
CCA1(1)
--------->
ARR14(2)
<---------
RVE1(1)
<---------
ARR11(3)
-------
<---------
ARR11(3)
--------->
ARR11(3)
<---------
CCA1(1)
--------->
ARR11(3)
--------->
CCA1(1)
<---------
RVE1(1)
------->
DAG2
<---------
AHL20(1)
--------->
ARR11(3)
------->
DOF2
--------->
AHL20(2)
<---------
ARR11(3)
---------
AGL15
--------->
AHL20(1)
---------->
DOF2
------->
AGL15
---------->
DOF2
--------->
YAB1
--------->
ANAC46
<------
--------
AGL15
---------->
DOF2
<------
ZmHOX2a(2)
--------->
ANAC46
-------
-------->
AG
----------->
GT1
<---------
ARR11(3)
<---------
REM1(2)
<-------
-------->
AGL3
<------
MYB46(1)
--------->
ARR11(3)
<---------
HSFC1(2)
--------->
AHL20(1)
-------->
AGL1
<------
MYB83
---------->
DOF2
--------->
RVE1(1)
--------->
HSFC1(2)
<---------
AHL20(1)
aaaaggagatattatttttgtaggtgaaaagaaagagaaagatcaaatataatatctggcaaattggaaacgtctacacaaaaaaagatatttgtgtatc
19581400
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AGI:
At5g48250.1
Description:
zinc finger (B-box type) family protein. Identical to Zinc finger protein CONSTANS-LIKE 10 (COL10) [Arabidopsis Thaliana] (GB:Q9LUA9); similar to COL9 (CONSTANS-LIKE 9), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G07650.3); similar to COL9 (CONSTANS-LIKE 9), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G07650.2); similar to COL9 (CONSTANS-LIKE 9) [Arabidopsis thaliana] (TAIR:AT3G07650.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO41128.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPr
Range:
from: 19578545
to: 19580948
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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