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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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          --------->MYB52(2)       <----------ID1                       ---------->DOF2
        <---------MYB52(1)  --------->TOE2(3)                       --------->MYB52(1)
        <--------P   <---------YAB1----------->GT1                 ------->GAMYB
      <---------MYB46(3)  <---------ARR11(3)               --------->AHL20(2)                  -----
     <---------TOE2(3)--------->YAB1             --------->TOE2(3)<---------MYB52(2)           -----
----------------AG <---------CCA1(2)           -------->P--------->TOE2(3)                   -------
 
aaaccattttggttagtcccttatatcataatcttagaaggaaaaaaacttaccacaatacattaaacaactaacaaaagcttgaaacttggtatcgaaa  19580500
                                                                                                 ---
                                            ------>ZmHOX2a(1)                                  -----
                                   <---------ARR11(3)                                         <-----
                                   --------->ARR11(3)  <-----------GT1                       ------>MYB83
---->ANAC58                     <-----------GT1     ----------->GT1                          ------>MYB46(1)
---->ANAC58             <---------ATHB12   --------->TOE2(3)               <---------ZAT14  --------
--->DOF2       ---------->DOF2 <-----------GT1---------->DOF2 ------>ZmHOX2a(1)      ---------->DOF2
 
gcaagtccagaattagataaaagtccaatctttttaaacatctcttcctcaaagattgtaacttcctatggatgagactgttctaaatcaaagaccaatc  19580600
                                                                            --------->At4g35610
                                                                            <---------At4g35610
                                                                 --------->YAB1
                                                                <---------ATHB12
                                                               ------>MYB83 ----------->GT1
                                                              --------->WOX13(1)
                                                             <---------------AGL15--------->AHL20(2)
                               ---------->DOF2             ------->TEIL   <---------ZAT18
------->DOF2         <-----------GT1              <------ZmHOX2a(2)       --------->ZAT18       <---
---->YAB1           --------->YAB1               --------->AGP1------>MYB46(1)    <---------AHL20(2)
----ATHB12         <---------ATHB12             --------->At4g35610  --------->ZAT14        <-------
->WOX13(1)       --------->WOX13(1)             <---------At4g35610  <---------ZAT14 <---------YAB1
 
aaaagagacatcagagaaaccaattaacatcgcagaaagacttcaaatttcagatcaacatgtaccaatcagagaagtgagctaaaaaattatagatttc  19580700
                                       ===================HOX2a_HOX2a
                                       <------ZmHOX2a(2)
                                      --------->ARR11(3)              ------->GAMYB
                           <------ZmHOX2a(2)                    --------->ANAC46
                           ===============================HOX2a_HOX2a ==============================
     <---------ARR14(2)   --------->ARR11(3)                    --------->ANAC58
     --------->ARR14(2)   --------->ARR14(2)       <------ZmHOX2a(1)-------->P        --------->ANAC58
    <---------GLK1(1)     <---------ARR14(2)    --------->DAG2  --------->ANAC58      --------->ANAC58
<-----------GT1    ---------->DOF2    <---------ARR11(3)   --------->GLK1(2)      <-----------GT1
------YAB1   <---------ZAT14<-------TEIL --------->WOX13(1)<-----------ARR10   --------->YAB1      -
--GLK1(1)--------->LBD16  <---------ARR11(3)   ---------->DOF2---------->DOF2--------->AHL20(2)    =
 
ttattacaaatccgagagaagtgaaagaagatccatttcaagatcagtcaaaaaggattgagaatcaaagcaaccctcactaaaataacaagacaagggt  19580800
                    <------ZmHOX2a(2)
                   --------->ARR11(3)
                   <---------ARR11(3)
              =============HOX2a_HOX2a
              ==============HOX2a_HOX2a
          --------->TOE1(2)
         --------->O2
         --------->ANAC46
         <---------ANAC55(2)     --------->At4g35610
         --------->ANAC55(2) <---------ARR14(2)
         <---------O2------>ZmHOX2a(2) <---------At4g35610
         --------->TGA1a     --------->ARR11(3)
         <---------TGA1a     --------->ARR14(2)                                          --------->LBD16
    --------->At4g35610      <-----------ARR10                                     --------->HSFC1(2)
    <---------At4g35610   --------->ANAC55(2)                                      --------->HSFB2a(1)
===================MYC_MYB<---------ANAC55(2)                              ---------->DOF2
--------->DOF2<------ZmHOX2a(1)  ----------->RAV1(2)           <----------DOF2    --------->ICU4
===================bZIP_DOF  <---------ARR11(3)           <---------WOX13(1)      <---------YAB1
 
tttaaagagctcacgtaggagagatcgtcaagtatcttctgaagcagagacaccaaaaatgaatgacttttgaaacgaataagcgatgattccacaaatt  19580900
                                                             <---------ANAC46
                                                         <-------GAMYB
                                                         <---------ANAC58
                                                         <---------ANAC58                       ----
         <---------ANAC58                                <---------ANAC46                       <---
         <---------ANAC46                               <------MYB46(1)                      -------
         <---------ANAC58                               <------MYB83                        <-------MYC3
        <-------TEIL                                   <---------MYB46(3)                   ------->MYC3
     --------->At4g35610    <----------ID1             --------->MYB55(2)                  <--------
     <---------At4g35610    ----------->GT1           --------->ALFIN1               <---------At4g35610
     --------->ZAT2      ---------->DOF2            <---------ANAC58                 <------NtERF2
     <---------ZAT2  ----------->GT1                <---------ANAC58---------->DOF2  --------->At4g35610
 <----------DOF2    ----------->GT1            *TSS<---------MYB46(3)   <----------ID1     ---------
 
tcttctttagctgcgtgtgaagaagggtaaaaggagaaacagatggatagacaatgggtgggttgtgtctgcaaagggacatgtaggcagaggcatgtga  19581000
                             --------->DAG2                                                        -
                            ---------->DOF2                                                       --
                   <------------CBF                                                             <---
            --------->HSFB2a(2)                                       <---------AHL20(2)        <---
      <---------YAB1   <---------ANAC46                           <---------RVE1(1)             <---
 <---------At4g35610   ----------->GT1                            <---------CCA1(1)     --------->ANAC55(2)
 --------->At4g35610  <---------MYB46(3)                         --------->ARR11(3)     --------->ANAC58
----->bZIP60(1)   --------->ATHB12                               --------->AHL20(1)     <---------ANAC55(2)
------bZIP60(1) <<<<<<<<<<<<<<<<<LFY                             <---------AHL20(1) <-----------HVH21
---->HVH21  <---------HSFB2a(2)                                  <---------ARR11(3)<---------bZIP60(1)
-At4g35610  <---------HSFC1(1)                               ---------->DOF2       --------->bZIP60(1)
>At4g35610  --------->HSFC1(1)      ---------->DOF2    <------ZmHOX2a(1)  <---------YAB1--------->ANAC58
 
cataagctgataattctagaaacattgggtaaaaagttcaaaagaacccattttctaaggaccctaaagatatttttatgagtatgaagtcacgcgctcg  19581100
                                                          <---------ARR14(2)
                                                          <---------GLK1(2)
                                                    --------->ARR14(2)
                                                    --------->GLK1(2)
                             --------->ANAC58       <---------ARR14(2)
           --------------->AtSPL3                  <---------ARR14(2)
       ---------->DOF2       --------->ANAC58      <---------GLK1(2)
     ---------->DOF2      <---------REM1(2)     <-----------------AGL2
 <---------ETT(2)      <------ZmHOX2a(2)        ----------------->AG
-------->REM1(2)      --------->ARR14(2)        ----------------->AGL1                    <---------TOE2(3)
------->ALFIN1        <---------ARR11(3)    <---------DAG2--------->ARR14(2)              <---------TOE1(3)
------ANAC46      --------->ANAC46          <----------DOF2      ---------->DOF2      <----------DOF2
------ANAC58 <---------SPL7  --------->ANAC46   <-----------------AGL1           <---------At4g35610
------ANAC58 <---------RAP2.6(3)      --------->ALFIN1<---------LBD16       <----------DOF2      ---
 
cgtgtagacaaagagccgtactcgcgatctacaaggcacaagtggaacttttccgattctggattctcaaaagcgtcttcttttagatgctttaaggctt  19581200
                                                                                                  --
                                                                                                 ---
                                                                                             <------
                                                                                            --------
                                                                                            <-------
                                                                                           ---------
                                                                                           ---------
                                                                                           ---------
                                                               --------->CCA1(2)       <---------ANAC58
                                                   --------->YAB1                      <---------ANAC58
                                                   --------->TOE2(3)                 --------->ARR11(3)
                    <----------DOF2              <---------ARR11(3)   ------->MYC3   <---------ARR11(3)
       --------->YAB1    <----------DOF2         --------->ARR11(3)   <-------MYC3   --------->AHL20(1)
      <---------ATHB12  <---------ANAC58         --------->AHL20(1) ------->TEIL     <-----------ARR10
    --------->WOX13(1)  <---------ANAC58        --------->CCA1(1)--------->ANAC58   --------->RVE1(1)
------->DOF2 --------->YAB1    <----------DOF2  --------->RVE1(1)--------->ANAC58   --------->CCA1(1)
 
aaaagcccaatcacaacaatagtctttgctttgactttacaaaaaaccaaaatatcttaatttgagagacgcacatgaatgaacaaaatatcttgcctaa  19581300
          <---------YAB1
         <---------AHL20(2)
         <---------AHL20(1)
       <---------YAB1                                ----------->GT1
       <---------AHL20(2)                        <---------ARR14(2)
     <---------CCA1(1)                           --------->ARR14(2)
     <---------RVE1(1)                           <---------ARR11(3)                          -------
    <---------ARR11(3)                           --------->ARR11(3)                 <---------CCA1(1)
    --------->ARR11(3)                          --------->CCA1(1)                   <---------RVE1(1)
------->DAG2                                <---------AHL20(1)                     --------->ARR11(3)
------->DOF2                                --------->AHL20(2)                     <---------ARR11(3)
---------AGL15                              --------->AHL20(1)                 ---------->DOF2
------->AGL15              ---------->DOF2 --------->YAB1                 --------->ANAC46   <------
--------AGL15          ---------->DOF2<------ZmHOX2a(2)                 --------->ANAC46     -------
-------->AG       ----------->GT1    <---------ARR11(3)                <---------REM1(2)    <-------
-------->AGL3     <------MYB46(1)    --------->ARR11(3)          <---------HSFC1(2)--------->AHL20(1)
-------->AGL1     <------MYB83   ---------->DOF2--------->RVE1(1)--------->HSFC1(2)<---------AHL20(1)
 
aaaaggagatattatttttgtaggtgaaaagaaagagaaagatcaaatataatatctggcaaattggaaacgtctacacaaaaaaagatatttgtgtatc  19581400
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AGI:  At5g48250.1   
Description:  zinc finger (B-box type) family protein. Identical to Zinc finger protein CONSTANS-LIKE 10 (COL10) [Arabidopsis Thaliana] (GB:Q9LUA9); similar to COL9 (CONSTANS-LIKE 9), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G07650.3); similar to COL9 (CONSTANS-LIKE 9), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G07650.2); similar to COL9 (CONSTANS-LIKE 9) [Arabidopsis thaliana] (TAIR:AT3G07650.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO41128.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPr
Range:  from: 19578545    to: 19580948    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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