Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->MYB52(2)                                                                   --------->SPL7                            ------>ZmHOX2a(1)                   <---------ANAC58                  --------->DEAR3(1)                            <---------ANAC46                <---------At4g35610                             <---------ANAC58          ------>ZmHOX2a(1)                --------->LBD16                              <---------MYB52(1)          --------->TOE2(3)                --------->At4g35610                         <-----------HVH21            --------->TOE1(3)              <---------LBD16                              --------->ANAC46    <---------ANAC58 ->GLK1(1)  ------>ZmHOX2a(1)                            ------>ZmHOX2a(1)     <---------ANAC58 <----   ttctccattctctccttccgcagactcttcctcgactcaataagcttcagcctctcttcctccgtcgcgttcgctagggtttcttcccattccttaagct  19334500                                                                              --------->At4g35610                                                                              <---------ZAT2                                                                              <---------At4g35610                                                                              --------->ZAT2                                                               --------->ARR14(2)                                                               ------->TEIL <-----------RAV1(2)                                                               <---------ARR14(2)                                                               <---------ARR11(1)                                               <---------ZAT2  <-----------ARR10                                               --------->ZAT2 <---------CCA1(2)          <----------DOF2       ------>ZmHOX2a(1)             <---------ARR14(1)          <------------------------ANAC81      --------->At4g35610        <-----------HVH21       ------>ZmHOX2a(1)      ----------->RAV1(2)<----------DOF2     <---------At4g35610            - ------DOF2               ------>ZmHOX2a(1)    <---------At4g35610<----------DOF2      <---------At4g35610   ttctctctccttcttttctcttatgctccttctcctgtgccttcttctcagctttcttcgcttcgtatctttgctgcttcagctgcttcttctgagcatt  19334600                                                                                      <------NtERF2                                                                                     ------>NtERF2                                                                                    --------->RAP2.3(3)                                                                                    --------->RAP2.3(2)                                                                                    --------->RAP2.6(2)                                                                                    --------->ATERF1(2)                                                                                    --------->RRTF1(2)                                                                                    --------->RRTF1(3)                                                                                    --------->ANAC46                                                                                    <---------ATERF1(2)                                                                                   --------->ORA47(2)                                                                                   --------->RAP2.6(1)                                                                                   --------->ATERF1(1)                                                                                   --------->RRTF1(1)                                                                                   --------->RAP2.3(1)                                                                                   <------NtERF2                                                                                   --------->ERF1                                                                                   --------->DEAR4(2)                                                                                  <---------ATERF1(1)                                                                                  <---------At4g35610                                                                                  --------->At4g35610                                                                                  --------->ABI4(1)                                                                                  ------>NtERF2                                                                                  <---------DREB2C(1)                                                                                  <---------RAP2.3(1)                                                                                 --------->RAP2.3(2)                                                                                 --------->ATERF1(2)                                                                                 <---------DEAR3(1)                                                                                 --------->RAP2.3(3)                                                                                 --------->ANAC46                                                                                 <---------ATERF1(2)                                                                                --------->RRTF1(1)                                                                                <------NtERF2                                                                                --------->ATERF1(1)                                                                                --------->DEAR4(2)                                                                                --------->ERF1                                                                                --------->ORA47(2)                                                                                --------->RAP2.3(1)                                                                                --------->RAP2.6(1)                                                                               ------>NtERF2  ------>NtERF2                                       --------->GLK1(2)                       <---------ATERF1(1)                                      --------->ARR14(2)                      --------->DEAR3(1)                                  <-------TEIL                    <-----------TGA1<---------DEAR4(2)                               <---------DEAR3(2)                <---------bZIP60(1)--------->DEAR3(1)                             <------NtERF2                       --------->bZIP60(1)--------->DREB2C(2)                   --------->DOF5.7(2)<---------ARR14(2)         --------->ETT(2)--------->DEAR3(1)                  --------->TOE2(3)   <---------GLK1(2)         ---------->ID1<---------DEAR3(1)           <------NtERF2    --------->ABI4(2)              <---------MYB46(3)--------->ATERF1(1)         <---------DEAR3(1) ------>NtERF2             <---------At4g35610   <-----------HVH21 -------         --------->ALFIN1  ----------->HVH21          --------->ZAT2        <---------ATERF1(1)   <-----------RAV1(2)     --------->ALFIN1  <----------DOF2 <---------MYB52(1)<---------RAP2.3(1) -- ---------->HVH21 --------->TOE1(3) ----------->ARR10 --------->At4g35610  --------->ANAC46 <--------   cttcgacaggggaggcgaaacgttaaccggtgccggttcagattctggtttatcgaagcagccgttgtcgtcatttcccgtcgccgccgccattgccgcg  19334700                                                                --------->O2                                                                <---------bZIP60(1)                                                                --------->TGA1a                                                                <---------TGA1a                                                                --------->bZIP60(1)                                                                <---------O2                                                                =====================================    ---------->DOF2                                     --------->YAB1 --------->ANAC58                                     --------->ANAC58 --------->ANAC58                                     --------->ANAC46 -->LBD16                                             --------->ANAC58 -------->DOF2             ----------->GT1         --------->ZAT14            --------->ZAT6 -LBD16          ---------->DOF2                *TSS<---------ALFIN1<---------DEAR3(2)         ------   agaaagcaaagcgagagagcaaagaagaagggtcaaaaaactaaaattgaaactccactcaaaacgacgtcggtattcttacactaatgggcctggatgt  19334800        <---------ANAC58        <---------ANAC58        <---------ANAC46                    ----------->GT1       ------>NtERF2                     --------->DAG2   --------->DAG2                   <----------ID1                      ------------>CBF  --------->DAG2                   ----------->GT1                 <---------PCF5 ---------->DOF2                  ----------->GT1          --------->DAG2 ===========bZIP_DOF         <---------TOE2(3) ---------->DOF2--------->ALFIN1 --------->AHL20(2)<--- ----->GT1----------->GT1<----------DOF2---------->DOF2   ---------->DOF2    --------->AHL20(2)<-----   ttaaaaaggggcctgttaaacgatgggctttaagaatggggaaaaagggtaaagagaagagaaagtgagggaccatcaatataaaataagagaaaatgag  19334900                                                                                <----------DOF2                                                                               <---------ANAC58                                                                          <---------O2                                                                          <-----------RAV1(1)                                                                          --------->ALFIN1                                                                        --------->At4g35610                               <---------At4g35610                   <------ZmHOX2a(2)                               --------->At4g35610                   ================================                         --------->SPL7                            --------->At4g35610                     <------NtERF2                            <---------At4g35610    <<<<<<<<<TBF1  <                    <---------RAP2.6(3)                       <---------ZAT2   <---------ANAC58 ----- ---ZmHOX2a(1)     --------->DEAR3(1)     *TSS                --------->At4g35610  <----------------- ----TOE2(3)  ---------->DOF2  <---------ZAT2      <---------ZAT6  <---------At4g35610  <<<<<<<<<TBF1   gaagcgatgagagacacaaagccgtcgtaagtcagctaatcggggctcttgttgtgttagagagagctcagatcagatgtggctttcttcttcttctcct  19335000                                                                                        --------->At4g35610                                                                                        --------->ZAT2      --------->LBD16                                                          <---------CCA1(2)     <---------ANAC46                                                      <---------ANAC46    <---------LBD16                                                   <-----------RAV1(1)<---------GLK1(2) ==HOX2a_HOX2a                            <-----------GT1<---------ANAC58  <---------ANAC58 <<<<<<<<TBF1                         --------->AHL20(2) <---------ANAC58  <---------ANAC58 ->ZmHOX2a(1)                 --------->KAN4(1)<----------DOF2   <---------MYB52(1)----------->HVH21 -------ANAC81              <---------GLK1(2)  <---------DAG2   ----------------------->TaNAC69(2)   tcttcttccgcatagtgactctgagaaccagattattcaagaaaataccctttttgtttccttgttcgtttattgtggctcgtctctaacagcttcggtt  19335100                                                                           <---------ZAT2                                            --------->At4g35610           ------>MYB83                                           ----------->GT1                ------>MYB46(1)                                       <------ZmHOX2a(1)          <---------ANAC58                                       =============================HOX2a_HOX2a ------>ZmHOX2a(1)                                    <------NtERF2            ------>ZmHOX2a(2)----------->RAV1(2)                                   --------->LBD16           ==========================HOX2a_HOX2a                             <---------At4g35610     --------->ZAT2    -------->ZAP1               --------->ANAC46  <---------LBD16     <---------ZAT2  <---------WRKY18(1)             <-----------GT1 --------->At4g35610     --------->At4g35610<---------MYB59       -------    <---------ZAT14        <-----------RAV1(2)  ---------->DOF2   <---------ANAC58           <-------TEIL   taagagttctctgtttcactccccatggctcagaagccggaggaacagttgaaagagctgggatcgaagcttgacctagctcctgtttctaaagattcat  19335200                                                                                          <---------DAG2                                                                                          <----------DOF2                           <---------CCA1(2)                                  <---------MYB52(1)               --------->ALFIN1      <---------YAB1                         <---------ANAC58 -->ATHB12---------->DOF2<---------ALFIN1         --------->HSFB2a(2)       <---------ANAC58  <------   tgctcaaactcttaaaggtgtgattccccatctctacttctcattgtctcttctacaatttctccaagtttcgatttttcgtttggagggaacttttttc  19335300                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                    <---------------AGL15                                                               ------>ZmHOX2a(1)                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           <---------ARR14(2)                                                           <---------GLK1(2)           --------->AHL20(2)                                                           --------->ARR14(2)          <---------AHL20(2)                                                           --------->ARR11(3)      <---------YAB1              --------->AHL20(2)                    <----------DOF2----------------->AGL1     ---------->ID1                               --------->At4g35610    <---------ANAC46 <----------DOF2       ----------------->AGL1     <---------At4g35610 <---------MYB52(1)--------->ATHB12 -----GT1     <---------AHL20(2)        ---------->DOF2    <---------ARR11(3)   --------->ICU4>>>>>>>   catctttgtcccctgtttaaattctgccaaattggaaccgaataaagttttcagctttgtagatcctcttccgttctgggtaatgctcattaattgagcc  19335400  Previous    Next  AGI:  At5g47680.1    Description:  RNA binding / tRNA methyltransferase. similar to hypothetical protein [Vitis vinifera] (GB:CAN75735.1); contains InterPro domain tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); contains InterPro domain tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009); contains InterPro domain tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653) Range:  from: 19333358    to: 19334748    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47690.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT1G77600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75734.1); similar to hypothetical protein 26.t00005 [Brassica oleracea] (GB:ABD64989.1); similar to HEAT [Medicago truncatula] (GB:ABN05881.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 19334942    to: 19344560    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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