AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                         <---------------------WRI1
                                                                    ------->GAMYB
                                                                   <---------MYB52(2)
                                                          <---------MYB52(2)
             --------->ARR11(3)                   --------->TOE2(3)--------->MYB46(3)
             <---------ARR11(3)                 <---------YAB1   ----------->RAV1(1)
             <---------ARR14(3)             ------>ZmHOX2a(2) --------->ANAC58
          <------ZmHOX2a(1)                <------ZmHOX2a(2)  --------->ANAC58
       <---------LBD16--------->DAG2      --------->ARR11(3)  --------->ANAC46                    --
<------ZmHOX2a(2)    ---------->DOF2      <---------ARR11(3)--------->MYB52(1)               -------
>DOF2  <-----------RAV1(2)          ---------->DOF2      --------->At4g35610                --------
 
cggatcaaactcaggaggtcttggtaaagttccatcaacaaaagcgatcttattcttagcatctaacgcaacaaacatcgctattttccaagaagaaaag  19264700
                                                                                 --------->ANAC46
                                            <---------YAB1                      --------->LBD16
   --------->WOX13(1)                     --------->YAB1                    <---------ARR14(2)
  <-------TEIL                       <---------GLK1(2)                  --------->YAB1
 <------ZmHOX2a(2)                 --------->LBD16                   <---------ICU4
--------->AGP1                    --------->ANAC46                   --------->YAB1
------->MYB59                     --------->LBD16                   --------->ICU4
-->DAG2      --------->TOE2(3)   <---------LBD16              ----------->GT1 <---------LBD16
-->DOF2    ------->TEIL  --------->YAB1   <-----------GT1    --------->DAG2 --------->ARR14(2)
 
ttagatccatcaagtacctcagaaacaattgtagtacccggattatcaccattagacaatgcataaggtgaataatgagcatccgcgaaatcgaactgtg  19264800
                                                                                        <------ZmHOX2a(2)
                                                                                       --------->ARR14(2)
                                                                                       <---------ARR14(2)
                                                                                       --------->ARR11(3)
                                                                                 <---------ANAC58
                                                         --------->TCP16(1)      <---------ANAC58
                                                         --------->TCP20        <---------------AtSPL8
                                                         --------->ARR14(2)     <---------------AtSPL3
              <---------ARR11(3)                         <---------ARR14(2)<---------YAB1
              --------->ARR11(3)             --------->ANAC58              --------->ICU4------>ZmHOX2a(2)
 ----------->GT1------>ZmHOX2a(2)            --------->ANAC58     <---------ARR14(2)--------->SPL7
 
gaaatggataaactgatgatctcgtagcaaaattttgttgaatcggagacgaaattggtggaaccggtggaatcggtgaagattgagtacgatctggagt  19264900
                <---------WOX13(1)
               <---------ANAC58
               <---------ANAC46
               <---------ANAC58
           =====================HOX2a_HOX2a
           ------>ZmHOX2a(2)
          ======================HOX2a_HOX2a
          <------ZmHOX2a(2)         ----------->GT1
         <---------ARR11(3)         --------->RAP2.6(2)
         <---------ARR14(2)        <------NtERF2
         --------->ARR11(3)        --------->RAP2.3(1)
         --------->ARR14(3)      --------->DEAR3(1)
         --------->ARR14(2)      <---------DEAR3(1)
         <---------ARR14(3)     --------->ATERF1(1)
         --------->AGP1        <---------ATERF1(1)
        --------->GLK1(1)     ----------->HVH21        --------->MYB46(3)
       ----------->ARR10     --------->SPL7       ------->GAMYB
   --------->ZAT2   --------->GLK1(1) <---------MYB52(1)
   --------->At4g35610     <-------PIF5          --------->ANAC46
   ----------->RAV1(2)     ------->PIF5   <----------DOF2   <---------HSFB2a(2)
   <---------At4g35610   ------>ZmHOX2a(1)<---------DAG2    --------->HSFB2a(2) <-----------GT1
   <---------ZAT2 --------->ATHB12------>NtERF2 <---------LBD16 <---------GLK1(1)
 <-----------RAV1(2)<---------GLK1(1)--------->At5g28300--------->AtMYB61  --------->ATHB12
 
cttctcagctgagatcttgcttgatttcctcgtgcgacgccgtaacttttcaacggaaaccatcgcgaaatctgagcttgatttaactgatttatgaaga  19265000
                                                                --------->ALFIN1
                                                              <---------ANAC55(1)
                                                              <------MYB46(1)
                                                              <---------ANAC58
                            --------->At4g35610               <------MYB83--------->At4g35610
                            <---------At4g35610               --------->ANAC55(2)
                          <-----------RAV1(2)                 <---------ANAC46
                       --------->ZAT2                         <---------ANAC58
                       <---------ZAT2                         <---------ANAC55(2)
                       --------->At4g35610                   --------->MYB59
                <------ZmHOX2a(2)                            --------->MYB111(1)
               --------->ARR14(2)                            --------->MYB46(2) <---------ARR11(3)
               --------->ARR11(3)                            --------->MYB111(2)--------->ARR11(3)
               <---------ARR14(2)     --------->ARR11(3)    <---------MYB55(1)----------->ARR10 ----
               <---------ARR11(3)     <---------ARR11(3) <---------ZAT6   <---------At4g35610   <---
 
aacaatcgaaaaacagaagatcgacgagctcagatgaacaagaactcgaagatgtgaagagagttaggtgttgaatcggctgagaacttcgaattccagc  19265100
                                                    --------->HSFC1(2)
         --------->YAB1                             <---------HSFB2a(1)
        <---------YAB1                              --------->HSFB2a(1)              <------------CBF
      --------->TOE2(3)             --------->TOE1(2) --------->GLK1(2)        ----------->GT1
      --------->YAB1             --------->GLK1(2)  <---------HSFC1(2)         <---------MYB46(3)  -
----->ZAT14                 ---------->DOF2 >>>>>>>>>TBF1  <---------MYB52(1)  --------->MYB52(2)<--
------ZAT14              --------->GLK1(2) *TSS>>>>>>>>>TBF1                ------------>MYB.PH3(2)<
 
gctctgataccataatagaactagagagaatcaaagaatcgaacgaagaagaagaagtttctgttattcatcttaagaaagtttgttacattgagactct  19265200
                                           ------>MYB83
                                         <---------MYB59
                                         ------->GAMYB
                                      --------->MYB52(1)       <---------AHL20(2)
                        --------->MYB52(1) ------>MYB46(1)     --------->YAB1              ------->TEIL
-------->AHL20(2)   <-------TEIL   --------->ANAC55(2)         --------->AHL20(2)       <---------YAB1
--------DOF2     --------->LBD16   --------->ANAC46         --------->WOX13(1) <-----------GT1
-----------TBP <---------LBD16   <-----------GT1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <
 
ctttatatactagagagacccggttcataccggtttatacttaaccgaaccatacaatttcatcaattatatagtctattagtaacttctcatgaatctc  19265300
             <---------ANAC58
             <---------ANAC58
     <---------AHL20(2)                           ----------->GT1
    --------->AHL20(2)                           <---------TOE2(3)                                <-
    <---------AHL20(2)            --------->ARR14(2)                                              <-
    <---------AHL20(1)            <---------ARR14(2)                                             <--
    --------->YAB1     <---------YAB1        <----------DOF2                                     ---
---------ATHB12      <---------CCA1(2) <-----------GT1       <---------ANAC46                   <<<<
 
aaatcaataaaatttgacttgctcatatcattcggcaaattttcacatctttgatgtaaaattggtgtggaaactggaatccatttgtatttgggattta  19265400
                                                                                          <---------AHL20(2)
                                                                                    <-------TEIL
                                                                                <---------------AtSPL3
                                                                              <---------MYB52(1)
                                                                             <-------GAMYB--------->AHL20(2)
  <---------AHL20(2)                                                        <---------MYB46(3)
--------RVE1(1)                             --------->GLK1(2)               ------>ZmHOX2a(2)      <
--------CCA1(1)                             --------->ARR11(3)             <------ZmHOX2a(2)  <-----
-------ARR11(3)             --------->YAB1  <---------ARR11(3)            <---------MYB52(1) -------
------>ARR11(3)      --------->YAB1  ----------->RAV1(1)             <---------ARR14(2)   <---------YAB1
<<<<<RAP2.2    --------->YAB1       <----------ID1                   --------->ARR14(2)  --------->AHL20(2)
 
gatatttcaatggaccattcacaatcacaaatcacaagaacaacaaaaatctaagagaagataagtagtttgaatccgatcgttaagtacgttttaatta  19265500
                                                        <---------ATHB12    --------->DAG2
              ----------->GT1                          ------>MYB46(1)     ---------->DOF2
      <---------DAG2                                   ------>MYB83--------->TOE1(3)               <
      <----------DOF2                        ---------->DOF2       --------->TOE2(3)            ----
---------ETT(2)                            <---------YAB1          ----------->GT1           -------
----ICU4    ---------->DOF2             --------->TOE1(2)         --------->ANAC46    ----------->GT1
-->ICU4   <---------YAB1                --------->TOE2(2)         ----------->GT1--------->At4g35610
 
tgtcgataactttatgaaagtaaaatgccatagaatacaaaaacatatgaaagaaaccaaacatgctatacgttaaaaaaaaggagatgaagtgaaatgt  19265600
<- Previous    Next ->

AGI:  At5g47445.1   
Description:  transposable element gene. copia-like retrotransposon family, has a 7.6e-84 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Range:  from: 19263573    to: 19265144    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g47450.1   
Description:  AtTIP2;3 (Arabidopsis thaliana tonoplast intrinsic protein 2;3); water channel. Identical to Aquaporin TIP2-3 (TIP2-3) [Arabidopsis Thaliana] (GB:Q9FGL2;GB:Q0WNU5;GB:Q53XE4); similar to DELTA-TIP2/TIP2,2 (tonoplast intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT4G17340.1); similar to tonoplast intrinsic protein, putative [Brassica oleracea] (GB:ABD65010.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425)
Range:  from: 19265476    to: 19266731    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version