Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------ATHB12                                               ----------->GT1               --------->TOE2(3)       --------->AHL20(2)                         --------->DAG2               --------->TOE1(3)       <---------AHL20(2)                         <---------------AtSPL8    --------->ARR11(3)                --------->AHL20(2)                         --------->DAG2    <---------ARR11(3)           <---------GLK1(2)                      --------->HSFB2a(2)    <---------GLK1(2)<---------ICU4  <---------YAB1                     <---------HSFB2a(2) <---------------AGL15         --------->LBD16                      <---------GLK1(1) --------------->AGL15       <---------LBD16                   --------->CCA1(2)---------->DOF2 -->DOF2    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ------>NtERF2--------->GLK1(1)<---------------   ctactagattttgaaaaccctaatcaaggcctccggattattaaaaaaaaaaaacgaggccagagatttgatttccaaaacaaaaaggtaaatacaaact  19258000                                                                                                 ----                                                                                             --------                                                                                             --------                                                                 ----------->GT1             ------>ZmHOX2a(1)                                                               --------->REM1(2)             <-------                                                              --------->ALFIN1           --------->ARR14(2)                                                            <---------ANAC46             --------->GLK1(2)                                                            <---------ANAC58             <---------ARR14(2)                   <---------ICU4                           <---------ANAC58             ------->TEIL        ---------->DOF2                    --------->ANAC46------->MYC3             --------->MYB52(1)     --------->TOE2(3)                  --------->ZAT14    <-------MYC3            <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->TOE1(3)<-----------GT1   <---------ZAT14   --------->ANAC46        <---------ATHB12--- ------WRI1   <-------TEIL  <---------At4g35610         <---------ALFIN1  --------->WOX13(1)<--------   aagaaaaccctaaagattcaatttttacttcgctgattcgacttcacagaaggaaactccacgcgtgtagcaaaatcaatccaaatcaacgaatcctgga  19258100                                                         <------NtERF2                             <-                                                         --------->ATERF1(1)                       <-                                                        <---------RAP2.3(1)                        --                                                        <---------ATERF1(1)                        --                                            --------->At4g35610 <---------bZIP60(1)            ------                                            <---------ZAT2--------->DEAR3(1)               --------->HSFC1(2)                                            --------->ZAT2<---------DEAR3(1)               <---------HSFB2a(1)                              <---------ANAC58          <---------RRTF1(1)                --------->ARR14(2)                <---------MYB52(2)          <---------At4g35610 --------->bZIP60(1)       --------->GLK1(2)     ------>ZmHOX2a(1)        <---------ANAC58          ------>NtERF2                   <------ZmHOX2a(1) --------->ARR11(3)       <---------HSFB2a(1)           <---------ERF1  <---------CCA1(2) <---------KAN4(2) ------>DOF2   --------->ANAC58           ------>NtERF2<---------RAP2.3(2)           --------->HSFB2a(2) ->LBD16  <---------ARR14(2)  <---------ANAC46         <---------RAP2.3(3)           --------->LBD16 ->HSFB2a(2)   --------->ANAC58       ------>ZmHOX2a(2)<---------RRTF1(2)--------->ARR14(2)--------->HSFB2a(1) --HSFB2a(2)   --------->ANAC46   ----------->HVH21    <---------RRTF1(3)<---------ARR14(2)<---------HSFC1(2) ------>DAG2<-------TEIL  --------->HSFB2a(1)          <---------DEAR3(1)<-----------ARR10<---------- -LBD16   --------->ARR14(2) <-------TEIL--------->DEAR3(1)--------->LBD16     ------>ZmHOX2a(1)  <--   aaagttcctgcagattcaaggaacgagaacgtccgtgtgatcgccgagctgagaatggcgccggtgatgtctccaaatctccttctccgaggaatcttcg  19258200                                                                      --------->ZAT2                                                             <--------P                                                           --------->LBD16                                                         ------>ZmHOX2a(2)                                                         <---------LBD16                                                        --------->CCA1(2)                                                        <------ZmHOX2a(2)                                                        --------->ARR14(1)                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                       --------->ARR11(1)       <---------LBD16      --------->MYB52(1)                               <---------ARR14(2)   --------->ARR14(2) --------ZAT2                                          --------->AGP1--------->ANAC58 --------At4g35610                            --------->ANAC58       --------->ANAC58 ------->ZAT2                                 --------->ANAC46 <---------At4g35610 ------->At4g35610         --------->MYB52(1) --------->ANAC58 --------->At4g35610 --->ANAC46               --------->ARR11(1)<---------ALFIN1<---------MYB52(1) --------->ALFIN1 -ARR10 <----------ID1---------->DOF2------>ZmHOX2a(2) --------->ARR14(2)   <---------ARR14(2)<------ -------TOE1(2) ----------->GT1   --------->ATHB12   ----------->ARR10<---------ZAT2  <------ZmHOX2a(2)   cagctacaaaacgacaacttgtaacaaagaaacggatgatcgggcttcactccataagatccggtagctccaagctccgatttgggggatcaaaatcgag  19258300                                       --------->TOE1(2)                                      --------->YAB1                                     <---------YAB1                                     --------->ICU4                          ------>ZmHOX2a(2)                          ========================HOX2a_HOX2a       --------->LBD16   <------ZmHOX2a(2)      <---------LBD16    =========================HOX2a_HOX2a     <---------LBD16    <---------ARR14(2)     <---------ANAC58   <---------AGP1--------->ATHB12     <---------ANAC58   <---------ARR11(3)     <---------ANAC46   --------->ARR11(3)   <-----------HVH21    --------->ARR14(2)                           --------->ANAC46  <----------DOF2       --------->GLK1(2)                 <---------DEAR3(1)              ------>ZmHOX2a(2) <---------DAG2        <------ZmHOX2a(1)   <------ZmHOX2a(1)      <---------REM1(2)     --------->ARR11(3) ---HSFB2a(2)      ---------->DOF2   <---------ATHB12    <---------ZAT14 ---------->DOF2<---------ARR11(3)   aaacctttcggggggaaattgaaaaggatctagagagtaatcataggaatcgagtagagagcggtgtcttcacgagaaagaagatagatcgatcttgaaa  19258400                                                                            --------->YAB1                                                               <---------HSFC1(2)      <-----------ARR10                                                               --------->HSFB2a(1)     --------->ARR11(3)                                                <---------GLK1(1)<-----------GT1    --------->AHL20(2)                                     --------->LBD16           <---------HSFB2a(1) --------->AHL20(2)                                    --------->ANAC55(2)        --------->HSFC1(2)  --------->YAB1                                    <---------ANAC58  --------->LBD16       <---------ICU4                                    <---------ANAC55(1)       <---------KAN4(2)--------->AHL20(2)                                 <---------ARR14(2)  <---------ANAC55(2)   <---------ATHB51                                 --------->ARR14(2)  --------->ANAC55(2)   <---------AHL20(2)                                <---------CCA1(2)<---------ARR14(2)    --------->AHL20(2)  <---------CCA1(2)                       <----------DOF2          *TSS --------->ANAC46<----------DOF2<---------AHL20(2)                <---------ARR11(3)  <---------ANAC58<---------LBD16 --------->TOE2(3)  <---------ARR11(3)   tctagggtttggacacaagagctctctttctctcgtatccgtgtttatgtaaatcccgtaagagaattttcctttaaataatgaattaaaatcttatctt  19258500             ----------->GT1            --------->DAG2           ---------->DOF2        --------->YAB1                                                                       <-------    <---------ALFIN1                                                                      ------>MYB83   --------->ZAT18                                                                        ------>MYB46(1)  --------->TCP23                                                                       <---------MYB59  --------->TCP16(2)                                                                    <---------MYB46(2)  --------->TCP15(2)                                                                    <---------MYB111(1) --------->PCF2                                                                        --------->ANAC55(2) <---------PCF2                                                                  <---------AHL20(1) --------->PCF5                                                    ----------->GT1     <---------ANAC55(2) <---------PCF5                  <---------ALFIN1      <-----------GT1           --------->AHL20(2) <---------TCP11(2)             --------->MYB46(3) <---------AHL20(2)            <---------AHL20(2) <---------TCP15(1)           <---------ARR14(2)   --------->AHL20(2)            --------->AHL20(1) <---------TCP20              --------->ARR14(2)  <---------AHL20(2)----------->GT1  <-----------GT1 <---------TCP16(1) --------->GLK1(2)          <---------AHL20(2)---------->DOF2--------->AHL20(2)   atgggcccacttataaagtaagaatatggacagaaccacggttttgtttttatttattttccttcttaaaagttaaaacacattaaattacctaactttt  19258600                                            --------->AHL20(2)                                            <---------AHL20(2)                                            <---------AHL20(1)                                         <---------AHL20(1)                                         --------->AHL20(1)                                         --------->AHL20(2)                                         <---------AHL20(2)                --------->DAG2        --------->YAB1                           ----------->GT1               ---------->DOF2        --------->AHL20(2)                --------->AHL20(2)   --------           --------->TOE2(3)       --------->YAB1        <---------AHL20(2)    --------->At4g35610          ----------->GT1        <---------AHL20(2)     --------->ICU4<----------DOF2  --------->YAB1 ---DOF2  <---------ANAC55(2)    --------->AHL20(2)     --------->AHL20(2)--------->YAB1    ---------   gttaatttgaaaacgtaaaaagttgattttagtatattaataatattttatttgtgtaataaatagttttgacttttaataagctaaaatcatacagtaa  19258700                                  <---------DAG2                            <---------------AtSPL8                                                  <                          <------MYB83                                                             --   <---------DAG2         <------MYB46(1)          <-----------GT1<---------YAB1        --------->ATHB12 ->At5g28300     <---------ANAC55(2)            --------->YAB1<---------CCA1(2)  <---------YAB1    <- -->GT1          ----------->GT1  <----------DOF2<---------AHL20(2)      --------->PCF2<---------YAB1   aatcaatttttgtgaaaatatgtaaatttggtggtactttatgctatcaattttaacaaaacccatttcttattgggcccattttgattttgatttgttt  19258800                                                                    --------->ANAC58                                                                    --------->ANAC58                                                     ------------>CBF----------->RAV1(1)                                                <------------CBF    <----------ID1                                              <---------YAB1   --------->ANAC46                                              <---------AHL20(2)   --------->SPL7                                          <---------RVE1(1)    --------->ANAC55(2)        <---------AHL20(2)            <---------YAB1               <---------ARR14(2)    <---------ANAC55(2)        --------->AHL20(2) ---------AHL20(2)                       <---------ARR11(3)   <---------LBD16         --------->AHL20(2) ------->AHL20(2)                        <---------GLK1(2)<---------ICU4           ----------->GT1 --------AHL20(2)    <-----------GT1     --------->ARR14(2)  <-----------GT1    ---------->DOF2   attaaatgcccattttgatattttcacccgagtgaaaaatccagattttttattgctcaatatttacgggacgacaaaaaaaaaaagattaaaaaaatgg  19258900  Previous    Next  AGI:  At5g47430.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17410.1); similar to hypothetical protein 31.t00039 [Brassica oleracea] (GB:ABD65123.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68806.1); similar to hypothetical protein 24.t00020 [Brassica oleracea] (GB:ABD64942.1); contains InterPro domain DWNN domain (InterPro:IPR014891); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083) Range:  from: 19252858    to: 19258448    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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