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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------------->
AGL15
<---------
AHL20(2)
--------->
ATHB51
<--------
ATHB1
<---------
ICU4
--------->
AHL20(2)
<---------
YAB1
--------->
ICU4
--------->
ANAC58
<---------
YAB1
--------->
DAG2
--------->
LBD16
--------->
GLK1(2)
--------->
ANAC58
<---------
ARR14(2)
<---------
ARR14(2)
--------->
YAB1
<------
--------->
YAB1
--------->
YAB1
--------->
ARR14(2)
--------->
WOX13(1)
<-------
--------
ANAC58
--------->
GLK1(2)
<---------------
AGL15
---------->
DOF2
--------
--------
ANAC58
--------->
ARR14(2)
XXXXXXXXXXXXXXXXXXXX>
MIR851-5P
<---------
ATHB12
<-------
gtcttgtgc
ctatcacaacaaaatccgaataataatttctaaattcagaatccacaaaaaaaaaaaagcaatcaaaattgaaatcaaaaattcaattttt
19030800
------->
TEIL
--------->
LBD16
<---------
LBD16
<---------
GLK1(1)
<---------
At4g35610
--------->
GLK1(1)
--------->
ZAT2
--------->
At4g35610
<---------
ZAT2
<---------
HSFB2a(2)
--
--------->
LBD16
---
--------->
ANAC46
----
--------->
HSFB2a(2)
<---
<---------
LBD16
--------->
ARR14(2)
<----
---
AHL20(2)
<---------
LBD16
<---------
ARR14(2)
<----
--
AHL20(1)
<---------
GLK1(2)
<---------
ARR11(3)
----------
->
AHL20(2)
<---------
At4g35610
<---------
CCA1(2)
--------->
At4g35610
--
AHL20(2)
<---------
TOE2(3)
<-------
TEIL
--------->
LBD16
<----------
DOF2
<---------
DOF5.7(2)
tttatcaaatgaaatttagatttcaatttcaacatac
agcttctcccggagctccggtgtatctttgggagtaccaagtgtgttaacgagtcgctgaaac
19030900
--------->
ANAC58
--------->
ANAC46
<---------
HSFB2a(2)
--------->
HSFB2a(2)
--------->
KAN4(2)
<---------
KAN4(1)
<----------
TaMYB80
--------->
KAN4(1)
--------->
AtMYB61
--------->
HSFC1(2)
<---------
ARR14(2)
--------->
HSFB2a(1)
<-----------
ARR10
<---------
LBD16
<---------
HSFC1(2)
--------->
GLK1(2)
--------->
GLK1(2)
---------->
TaMYB80
--------->
ARR14(2)
--------->
ATERF1(1)
<---------
KAN4(2)
<---------
ARR11(1)
<---
------->
REM1(2)
--------->
HSFB2a(2)
<---------
ANAC58
--------->
MYB46(3)
------>
ZmHOX2a(1)
------>
ALFIN1
<---------
HSFB2a(2)
<---------
ANAC46
<---------
ETT(2)
------>
ZmHOX2a(2)
--->
MYC3
------>
ZmHOX2a(2)
<---------
ANAC58
--------->
ETT(2)
=================
----
MYC3
--------->
ARR11(3)
--------->
MYB52(1)
---------->
ARF1
<---------
ARR11(3)
-----
O2
<---------
MYB52(1)
<---------
HSFC1(1)
------->
TEIL
--------->
ARR11(3)
-----
ANAC46
<---------
AGP1
--------->
ANAC58
<---------
CCA1(2)
===============
HOX2a_HOX2a
->
HVH21
--------->
LBD16
<---------
HSFB2a(1)
<---------
ARR14(1)
------>
ZmHOX2a(1)
------
gtggagactccggtattgatctggaatattccagaagcaacggcttgtgtcgaatcttgtcgaccaccattgaatttcctcgttgatcttcctcttcctg
19031000
<---------
AGP1
<---------
ARR14(2)
--------->
ARR14(2)
<---------
HSFB2a(2)
=====================
HOX2a_HOX2a
<---------
ARR11(3)
--------->
HSFB2a(2)
--------->
ARR11(3)
<----------
DOF2
<---------
ARR11(3)
<---------
CCA1(2)
--------->
ARR14(2)
--------->
ARR11(3)
<---------------
AGL15
<---------
ARR14(2)
--------->
DAG2
------
GLK1(2)
--------->
ANAC46
<---------
LBD16
------>
ZmHOX2a(2)
=
HOX2a_HOX2a
<---------
HSFB2a(2)
--------->
LBD16
>
ZmHOX2a(1)
--------->
HSFB2a(2)
------>
ZmHOX2a(1)
---------->
DOF2
attctaaatcttgaaaactcat
cttcttcgcgaaacctctttttttcctggaaaaattggatctacaaaaagattgagaaattggttatcggagttttct
19031100
------>
ZmHOX2a(2)
<---------
ANAC46
<---------
ARR14(2)
<------
NtERF2
--------->
ALFIN1
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<---------
WRKY38(1)
<---------
WRKY12
<----
--------->
WRKY18(1)
--------->
DAG2
<----
<-----------
HVH21
--------->
CCA1(2)
<-----
--------->
MYB52(1)
--------->
ARR14(2)
---------->
DOF2
------
ctaatctctgagaaaaaaaaaacgaaggtcaaggcgtggatcgtggagacagatagacgaagattgaaaagcgttttcgaaaaaatcccaaactgatttt
19031200
<---------
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(1)
--------->
At4g35610
<---------
DAG2
--------->
AHL20(1)
<----
---------->
DOF2
<----------
DOF2
----------->
TBP
-----
-----
YAB1
--------->
DAG2
*
TSS
------>
ZmHOX2a(1)
<---------
ANAC58
-----
AHL20(2)
<-----------
GT1
<-----------
GT1
<---------
ANAC58
----
AHL20(2)
--------->
DAG2
<----------
DOF2
------>
ZmHOX2a(1)
-----------
--->
AHL20(2)
---------->
DOF2
------>
ZmHOX2a(2)
<-----------
GT1
<-----------
GT1
--
aattgagaagaaaaagctgagataaagttgt
ttcctttttgatccttttatttctatatatttagtaacctctcctcgtttctgtttttcttgccaaatt
19031300
<--------
<---------
ARR11(3)
--------->
ICU4
----------->
GT1
<---------
ICU4
<------
MYB46(1)
--------->
ATHB51
<---------
AtMYB61
<--------
ATHB1
--------->
MYB59
--------->
YAB1
<------------
CBF
--------->
ARR11(3)
<---------
AHL20(1)
-----
AHL20(2)
<---------
TOE2(3)
--------->
ATHB12
--------->
AHL20(2)
---->
AHL20(2)
--------->
ATHB12
<---------
YAB1
<---------
ATHB12
------>
AG
<------
MYB83
--------->
GLK1(2)
<---------
AHL20(2)
--------->
ICU4
---------->
CBF
<------------
CBF
<---------
MYB52(1)
<---------
ATHB51
---
aaacaattggtttggtttattgagattttggtttgggtcagtttgtttttatttttgatttgattcagttttagttaataaacaataatttttagttagt
19031400
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
YAB1
<---------
AtMYB61
<---------
AHL20(2)
--------->
MYB59
--------->
AHL20(2)
--------->
AHL20(2)
<------
MYB46(1)
--
<---------
AHL20(2)
<---------
AHL20(2)
<------
MYB83
<<<
<---------
AHL20(1)
<-----------
GT1
--------->
YAB1
<------
MYB83
<------
--------->
AHL20(1)
<---------
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
--------
-
MYB52(1)
<---------
YAB1
----------->
GT1
----------->
GT1
<---------
AHL20(2)
---------
------>
AHL20(2)
<---------
AHL20(2)
----------->
GT1
--------->
AHL20(2)
<------
MYB46(1)
<--------
ttatatattaatatgattatattttttctcaatatgtgtaaatagttaaaatgtaaagttttaataaaacatttatttggtttggtttagttcagataca
19031500
<---------
ZAT18
------>
NtERF2
--------->
ABI4(2)
<
<------
MYB83
------
<------
MYB46(1)
-------
<---------
ANAC58
---------
<---------
ANAC58
<---------
ICU4
<---------
ATHB12
--------->
MYB46(2)
<---------
ATHB51
------->
YAB1
<---------
DEAR3(1)
--------->
ICU4
<<<<<<
ARR2
--------->
MYB52(2)
<---------
TOE2(3)
<---------
YAB1
-
TEIL
--------->
AHL20(2)
<------
MYB46(1)
--------------->
AGL15
--------->
YAB1
->
CCA1(2)
<-----------
GT1
<---------
MYB46(3)
<---------------
AGL15
-------->
HAHB4
>
ARR14(2)
----------->
GT1
<------
MYB83
<---------
MYB52(1)
--------->
YAB1
<
-
ARR14(2)
<---------
TOE2(3)
--------->
MYB59
<-----------
GT1
----------->
GT1
--
atcaaatcagtttatataagattccactacggtttaaacagttcaatttggttcggtgcccttagtttaactattttaggtgaaagtttaataatgaaaa
19031600
----------->
GT1
--------->
ARR14(2)
--------->
KAN4(2)
<---------
ARR14(2)
--------->
HSFB2a(1)
<---------
KAN4(1)
<----------
TaMYB80
<---------
HSFB2a(1)
--------->
KAN4(1)
----------->
ARR10
--------->
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<----------
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
YAB1
--------->
ATHB12
<---------
AGP1
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
------
MYB46(1)
--------->
ARR14(2)
--------->
ANAC55(2)
--->
DAG2
--------->
ANAC58
----------->
GT1
<---------
ANAC55(2)
xxxxxxxxxxxxxx
--->
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ARR14(2)
<---------
ANAC58
>
YAB1
<---------
ZAT18
<---------
LBD16
------->
GAMYB
<---------
YAB1
------
MYB83
<---------
KAN4(2)
<-----------
GT1
<---------
AHL20(2)
<-
------->
MYB59
---------->
TaMYB80
<-------
TEIL
--------->
ARR14(2)
<---------
ANAC58
gtaggtctgggcacgaagcgaatattcggaaaaattgtgatatttgttattcgattcgttttaaccgaatacttgattttatgatttgctttgattcgaa
19031700
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AGI:
At5g46860.1
Description:
VAM3 (syntaxin 22); SNAP receptor. Identical to Syntaxin-22 (SYP22) [Arabidopsis Thaliana] (GB:P93654); similar to SYP23 (syntaxin 23), SNAP receptor [Arabidopsis thaliana] (TAIR:AT4G17730.1); similar to SYP23 (syntaxin 23) [Arabidopsis thaliana] (TAIR:AT4G17730.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN75135.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989)
Range:
from: 19029248
to: 19031231
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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