Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------GLK1(2)                            --------->ARR14(2)                 <---------ANAC58                 <---------ANAC46          <---------------AGL15         --------->ZAT6     <---------ARR14(2)     <---------MYB52(1)    <------ZmHOX2a(1)   <---------ANAC58 <---------MYB46(3)   <---------ANAC58--------->ALFIN1         ----------->GT1 ---->ANAC58     <---------ANAC58          ----------->GT1                                     ------ ---->ANAC46    --------->MYB55(2)   --------->HSFB2a(2)                            --------->At4g35610 ---->ANAC58    <---------MYB46(3)   <---------HSFB2a(2)   <----------DOF2          <---------At4g35610   gcaatgcgttatctctattgggtggatgaggaatctcatcgagaagagataaaaactcagacttttcagtgaaaatagaactattgagcttcagagcaaa  18916500                    <------ZmHOX2a(1)                  <---------TOE2(3)         --------->TOE2(3)        ===================HOX2a_HOX2a        ------>ZmHOX2a(2)       <------ZmHOX2a(2)       ====================HOX2a_HOX2a      --------->ARR14(2)      --------->ARR11(3)                                                                    -------->ZAP1      <---------ARR14(2)                                          ----------->HVH21       <---------WRKY18(1)      <---------ARR11(3)                   <----------DOF2 ---------->DOF2               --------->WRKY38(1)    ----------->ARR10             --------->At4g35610--------->ZAT14   <----------DOF2   ----------->HVH21 ---->DOF2  --------->ATHB12      <---------At4g35610<---------ZAT14  <---------DAG2    <---------WOX13(1)   agccctaagatccttgatttgaggattgtaagagtaagcagaacgcttttgtctctgaagtgaaagaactgaccttttgggtcttgttggattgacccag  18916600                                                                                                   <-                                                                                                   <-                  --------->ARR14(2)                       <---------ANAC58                        <-                ----------->ARR10                          <---------ANAC58                    ------  <---------GLK1(1)                         <-----------RAV1(1)                 --------->ALFIN1 <---  --------->GLK1(1)--------->CCA1(2)        <---------MYB46(3)                --------->CCA1(2)<----- <---------GLK1(2)<---------ARR11(3)        <---------REM1(1)       <---------ANAC46          <------   acagatttcggtttagacaagatttgagtttgctcttgtctgagtgttgttgcagagagaggcttgagttgctcagagagagatggggtttttgtggtga  18916700     <<<<<<<<<TBF1               --------->ARR14(2)               <---------GLK1(2) --------MYB46(3)                <---------ARR14(2)      <---------HSFC1(1) -----MYB83                   --------->ANAC58           --------->HSFB2a(2) -----MYB46(1)                --------->ANAC58           --------->HSFC1(1) --->ATHB12                   --------->ANAC46       <----------DOF2 ------WOX13(1)    --------->MYB59                <---------TOE1(3) ----MYB46(3)      <---------TOE2(3)    --------->ANAC58 <---------HSFB2a(2)          <----------DOF2 ---YAB1           <---------TOE1(3)    --------->ANAC58<---------LBD16    ---------->DOF2<---------TOE2(3)   ttggttcttcttctagggttttaggttgtttcaaggaactgcaagaaatgttaagctttctggaacgagattgtctgaaaagagaaggctttaagaatag  18916800                                                                                                   XX                                                                           --------->ANAC58       ---                                 <---------At4g35610             <------NtERF2                 <-----                                 --------->At4g35610           --------->RAP2.6(2)             <-----       <----------DOF2 <---------LBD16             ----------->GT1         --------->ANAC58    <-----   actgtgtttctttgtgtctgaattttggggattgaagcagacatcaatggctgtggtaagaacagtcgccattagaaacgcagagtgagaggttttagcg  18916900                                                                                             <-------                        --------->YAB1                           <------MYB83               ---------    ----------->GT1  <---------CCA1(2)                           <------MYB46(1)           --------->ICU4 XXXXXXXXXXXXXXXXXX>MIR867                                      --------->MYB59          ---------->DOF2 ------>REM1(2)  <---------ARR11(3)                             <---------TOE2(3)        --------->YAB1 ----ANAC58      --------->ARR11(3)                    ----------->GT1             ------>NtERF2 ----ANAC58      <-----------ARR10                   ---------->DOF2              <---------PCF2 ----ANAC46--------->YAB1            ----------->HVH21--------->DAG2       <----------DOF2 <---------YAB1   tgaagatggtttatcagaacatcttatcttgattttgaaatgacgctcaaaactaaaaagtaatattaggttatgggcttcatggggcctataaagattg  18917000                                                --------->ALFIN1                                              <---------O2                                              --------->O2                                              <---------ANAC46                                         <---------ZAT14               --------->SPL7            --------->ZAT14            <---------ANAC46            <---------ANAC46           <---------LBD16          --------->ZAT14      <-----------GT1               <---------ZAT14  <---------ARR11(3)      ------------>CBF   --------->ARR14(2)   --------->YAB1<---------ANAC46                   <---------AHL20(2)  ----------->TBP    --------->bZIP60(2)<---------ZAT6  <----------DOF2  --------->AHL20(2)      ---- -----CBF--------->TOE2(2)  --------->DAG2    <---------ANAC58          --------->AHL20(2)      ----- >ATHB12----------->RAV1(2)---------->DOF2    <---------ANAC58  --------->ICU4      <----------------   gcccatatatacctgcggatggcacatcataaagtttgtgtagtgtagacgtgtagttctttggtcacgatgaaattaattcaatctattttagttttcc  18917100                                                  <-----------TBP                  <---------ARR14(2)                                             ------->TEIL                      <-------MYC2  <----------DOF2                          --------->LBD16                     <-------MYC3  --------->TOE2(3)                       --------->ANAC46                 --------->LBD16 -->ZmHOX2a(1)                           <---------LBD16                 <---------LBD16 <---------ANAC46 ---->TOE2(3)<----------DOF2          --------->At4g35610     <---------ICU4   ------->MYC2 --------ANAC81                    <---------ATHB12          ------------>CBF  ------->MYC3   tcaactttagttaaactttgtttgattacaaaatcaaatcatctccgcatctatatatacaaaatcaatacattttccgcatgtgtttccgacttgtact  18917200                                                                                         <---------YAB1                                                    <---------AHL20(2)                 --------->ATHB12                                                    --------->ARR11(3)                 --------->YAB1                                                 --------->AHL20(2)  --------->ARR11(3)--------->ATHB51                                                 --------->YAB1      <---------AHL20(1)<---------ICU4                                                <---------YAB1       <---------ARR11(3)<--------HAHB4                                              --------->YAB1 ----------->GT1           -------->ATHB1                                    <---------ANAC46--------->AHL20(1)                <---------YAB1                      <---------ATHB12     ----------->GT1   <---------ANAC46         <---------ATHB51         ---------->DOF2            ----------->GT1 <---------AHL20(1)                --------->ICU4   cttgtagttttgaaagagacacaaatgactcgatcgagtcgtaaactgttataatatatagtaacgtagaatatatatcaaatgaacaattattagtagc  18917300                                        --------->AHL20(2)                                        <---------AHL20(2)                                       <---------AHL20(2)                                       --------->AHL20(2)               <---------AHL20(2)                            --------->At4g35610                         --------->AHL20(2)                            <---------At4g35610                       <---------AHL20(2)                           --------->MYB59        <-------MYC3        --------->AHL20(2)           --                <---------YAB1   --------->At4g35610                --------->AHL20(2)            <--              <-----------GT1    <---------At4g35610        <------ZmHOX2a(1)                   -----          <----------DOF2<---------MYB52(1)       ------->MYC3 <-------TEIL                    <-----   attttttgtaaactttttatgattccagttagctctgctaaattaatagacatgtgtatataggatgcatatatatatataagtatttgtttctcaaatg  18917400  Previous    Next  AGI:  At5g46580.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to chloroplastic RNA-binding protein P67, putative [Arabidopsis thaliana] (TAIR:AT4G16390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63424.1); similar to putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa (japonica cultivar-group)] (GB:AAS01974.1); similar to hypothetical protein OsI_013882 [Oryza sativa (indica cultivar-group)] (GB:EAY92649.1); contains InterPro domain Smr protein/MutS2 C-terminal (InterPro:IPR002625); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18914672    to: 18916872    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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