Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <----------DOF2                                                                                    --------->At4g35610                    ----------->HVH21                                               <---------At4g35610                  <---------At4g35610                                              <-----------RAV1(1)                  --------->At4g35610                                         <---------HSFB2a(1)                  --------->ZAT2                                              <---------HSFC1(2)                  --------->O2            <-----------------AGL2              --------->HSFB2a(1)                 --------->LBD16          --------->MYB46(3)                  --------->HSFC1(2)                <---------HSFB2a(2)      -------->P                    <---------ZAT2  <---------At4g35610         <----------DOF2              <---------MYB52(2)        <---------ANAC58<---------ARR14(2) -------->DOF2  <-----------RAV1(2) <-----------GT1             <---------ANAC58--------->ARR14(2) -->At4g35610<-----------GT1    <---------TOE2(3)   <---------ZAT6     --------->ZAT2  --------->At4g35610 >YAB1   <---------DAG2   --------->ICU4--------->MYB52(1)      <---------ANAC46--------->GLK1(2)   gaaaagcttagcttttttccaggtgacaaagattaatgttactaaccgatattggtgttaagactggcttacaagctgggagtttctgctgcttaaactg  18727400       ------>NtERF2--------->ATHB12      >>>>>>>>>AtERF-4                             ------->TEIL      >>>>>>>>>AtERF-3                        <---------ANAC55(2)    --------->At4g35610                      <-------TEIL                         ------>MYB46(1)    <---------At4g35610                  ----------->GT1                          ------>MYB83    --------->ZAT2  -------->HAHB4      --------->DAG2                          <---------MYB59    <---------ZAT2 <---------ATHB12    ---------->DOF2            ----------------->AGL1      <------   atacagagctgccaaaatcaaatgattcaatgttcagttcaaaaagttacatgaatctataaacaattgccaaaatcgaataccaaatcacagcattttt  18727500                                                                                             --------                                                                                            =========                               ---------->DOF2   <---------ARR11(3)     <-----------GT1     ------>ZmHOX2a(2)                 ----------->HVH21         <---------WOX13(1)       --------->ATHB12        =========                --------->LBD16--------->MYB52(1)--------->ARR11(3)--------->ICU4  ------>ZmHOX2a(2)                <-----------HVH21       <---------YAB1             <---------YAB1  ==================    <---------MYB52(1)--------->At4g35610--------->ATHB12     <---------ZAT6     <---------ARR14(2) ---AHL20(2)   <---------ANAC55(2)   <----------DOF2      ---------->DOF2        --------->ARR14(2)   tttgcccttacttaaacccgtgagagcttaaactaaaggcttttgattgaagatttcgaagaaagtgttatgattaacctttggatcgtcttgatcgtaa  18727600                                             <--------HAHB4                                             --------->YAB1                                             <---------ICU4              =======================HOX2a_HOX2a              <------ZmHOX2a(1)<---------HSFB2a(1)      <---------WOX13(1)       --------->HSFC1(2)    --------->ATHB12           <---------HSFC1(2)   <---------YAB1              --------->HSFB2a(1) ====================================HOX2a_HOX2a<---------ICU4                        --------->HSFB2a(2) <------ZmHOX2a(1)     <-------TEIL         <---------ATHB12                          <---------HSFB2a(2) ->TOE1(2) <-----------RAV1(2)<------ZmHOX2a(2)<---------YAB1                    <-------TEIL =======HOX2a_HOX2a--------->ANAC58         --------->ICU4               --------->ZAT14 ====================HOX2a_HOX2a ------>ZmHOX2a(1)                 <---------MYB59   <---------LBD16 =======HOX2a_HOX2a--------->ANAC58 <---------ALFIN1  <---------ALFIN1   <---------ZAT14    >>>>>>>>>TBF1   gaaggatgattgatcaggagcacgattcatcgatccttccacttccatcattatcccctctctcgactacttaacttcactgatacatcgggaagaagaa  18727700                ----------->GT1               <------NtERF2              --------->LBD16             <---------ANAC46             <------NtERF2             --------->ALFIN1            ------>NtERF2            ----------->HVH21            --------->LBD16       <-----------ARR10           <---------ANAC58                   <---            <------NtERF2        <------NtERF2                <---------ANAC46                 <-----            <---------LBD16      <---------CCA1(2)            <---------ANAC58                 <-----           --------->DEAR3(1)   ------>NtERF2            <---------GLK1(2)                    <------          --------->ATERF1(1)  <---------ANAC58       <---------HSFB2a(2)                     -------         <---------ATERF1(1)   --------->DEAR3(1)     --------->HSFB2a(2) <--------P          <------         ------>NtERF2         <---------ANAC58<---------ARR14(2)--------->ZAT18            <--------         --------->LBD16     ------>NtERF2   <---------MYB46(3)  <---------ZAT18         ------>ZmHOX2a(2)        --------->DEAR3(1)   --------->LBD16--------->ALFIN1  --------->ANAC55(2)      <---------ARR11(3)        --------->ANAC46     <---------ATERF1(1) ------>ZmHOX2a(2) <----------DOF2 <---------At4g35610       <---------LBD16     <---------LBD16 <---------MYB52(1) <---------ANAC55(2)  ----------->RAV1(2)   atggtttactccgccgcggggataaaaactccggcgtctctcaccggtggatcgatctagaatcgcgtgctctctggtagattccacctgatctaagatt  18727800 ------AHL20(2)                                                                                  ---- ----CCA1(1)                                                                                   <----- ----RVE1(1)        *TSS    ----------->GT1                       ----------->GT1              ------ ---ARR11(3)    <---------AHL20(2)    ---------->DOF2             <----------ID1        --------->YAB1 -->ARR11(3)    --------->AHL20(2)  --------->AHL20(2)   --------->DAG2    --------->DAG2    -------- ---GLK1(2)    --------->AHL20(2)   <---------AHL20(2)  ---------->DOF2   ---------->DOF2   --------- -TOE2(3)----------->GT1  --------->ZAT14        ------->TEIL  ---------->DOF2         ----------->TBP   tttttttgaatttgtaaattaatctctcttcagtaaaattaaaagtatatgaacatgaaaaagttgaaaggaaaaaaaaagtttgaactataaaaaaagg  18727900                                                    <---------MYB111(1)                                                  ------>MYB46(1)                                                  ------>MYB83                                                  --------->MYB52(1)      ----------------->AG                      <---------MYB111(1)                        <--------- ------->GT1                                    <---------MYB46(2)                       <---------TOE1(3) -----ID1                                       <---------MYB59             --------->AHL20(2)------- ----->GT1                 <------ZmHOX2a(1)   --------->ANAC55(2)    --------->ANAC55(2)<---------TOE2(3) ->DAG2            <---------GLK1(2)       <----------DOF2    <---------ANAC46    <---------TOE2(3) ->DOF2       <-----------HVH21       ---------->DOF2         ----------->GT1    ---------->DOF2   agaaaataaccaaaaatgtcagaaactgaggactaaaattgaaagctttacctaactacttatagggtatatatgtaataaactaaagtttaaggtcagt  18728000                                                ----------->GT1                               <------                                           --------->ICU4                                     -------                                           <---------YAB1                                     <------                                         <---------ICU4                                       -------                                         --------->YAB1                                       <------                                       <---------AHL20(2)                                     <------                                     <---------AHL20(2)                                      --------                                     <---------YAB1                                          <-------                                    --------->AHL20(1)                                <---------YAB1                                    <---------AHL20(1)                                --------->ICU4                                   --------->YAB1                                   <---------ICU4---                                <---------AHL20(2)                                  --------->YAB1---                               --------->AHL20(2)                                   -------->HAHB4<--                               <---------AHL20(2)                                  <---------ATHB51                           <---------YAB1-------->HAHB4                            <---------ATHB12   --------->AHL20(2)    ----------->GT1--------->ICU4                             --------->ICU4<--- --HVH21             <---------TOE2(3)--------->YAB1                             --------->YAB1  ---- -->WOX13(1)      --------->ARR11(3)--------->AHL20(2) --------->AHL20(2)<---------GLK1(2) --------->YAB1   cacaaataaacaaaaacatagataatgttgtaattaaatataataatgaatagtcaataaactagataaactattgattcttctaataatgaataataat  18728100                                                                                                  ---                                                                                                  ---                                                                                                <---- <---------YAB1                                                                                <----- ---AHL20(1)                                                                                 -------- -->YAB1                                                                                     <------- --ATHB1                                                                                     <------- -->AHL20(2)                                                                                 ------>NtERF2 ---AHL20(2)                                                                                --------- ---ICU4      --------->ATHB12                                                            ------->GAMYB ->ICU4      <---------YAB1                                                               =========== --YAB1---------->DOF2                                             <---------GLK1(1)     --------->ANAC58 ------>AHL20(1)                         <---------AHL20(2)     --------->ETT(2)         --------->ANAC58 ------>AHL20(2)                   --------->ANAC55(2) --------->AHL20(2)                --------->ANAC46 -------AHL20(2)                   <---------ANAC55(2) <---------AHL20(2)           --------->ANAC46 ------AHL20(2)                   <-------TEIL        <---------AHL20(2)            --------->ANAC58 ----->AHL20(2)   <---------AHL20(2)     <-----------GT1        <---------ETT(2)    --------->ANAC58   tttattatacaaagtatgatttaaaagttttaaaaatacatatttacatatactaatttatatatgtcgatatcagaaaaaacaagaagcaacgcagccc  18728200                                                   --------->ZAT14                                             <-----------HVH21       <-----------GT1                 --------->ARR14(2) ------>O2--------->TOE2(3)            <---------ARR14(2) ------>TGA1a                       ----------->GT1<---------ZAT14 -----ALFIN1                        --------->bZIP60(1) ----ZAT18--------->TOE1(3)         <---------ANAC58 ->At4g35610                        <---------bZIP60(1) --At4g35610                        <---------ANAC58 --ATERF1(1)  <---------YAB1        <---------ANAC55(2) >DEAR3(1)<---------DAG2            --------->ANAC55(2) =======MYC_MYB   ------>ZmHOX2a(2) <---------ANAC46                              <---------ATHB12   acttcagattaaccttatgatccagacttcttcttatggcgtaactccatcactgaactataccctctcagttctgttcttcaaatcagtgtatgctaaa  18728300  Previous    Next  AGI:  At5g46150.1    Description:  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein. similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT3G12740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40351.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) Range:  from: 18725726    to: 18727820    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version