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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------->
GAMYB
<---------
MYB111(2)
--------->
ZAT2
<---------
ZAT6
---
--------->
ARR11(3)
<---------
MYB46(3)
-------->
ATHB1
<----
<---------
ARR11(3)
--------->
DAG2
--------->
ATHB12
-----
--------->
ICU4
---------->
DOF2
<---------
ICU4
<-----
<------
ZmHOX2a(2)
<---------
ZAT2
--------->
ALFIN1
--------->
ATHB51
XXXXXXX
--------->
ARR11(3)
<---------
At4g35610
--------->
YAB1
<---------
YAB1
<-------
<---------
ARR11(3)
--------->
At4g35610
<---------
HSFB2a(2)
--------->
ICU4
---------
---------
ID1
---------->
DOF2
--------->
REM1(2)
--------->
HSFB2a(2)
<---------
YAB1
--------->
TOE2(3)
--->
DOF2
<---------
GLK1(1)
<-----------
RAV1(2)
<---------
At4g35610
----------->
GT1
--------->
MYB46(3)
ggagacaagatcgatatcggtaaagatgtttcagctgtgaagaaaggtggatgctgctcgaactaa
tcagagagtagaattattgttaacaacctaagga
18577900
<-----------
GT1
<---------
TOE2(3)
<---------
DOF5.7(2)
<---------
TOE1(3)
--------->
MYB52(1)
--------->
MYB59
--->
ZmHOX2a(2)
<----------
DOF2
-----
ARR14(2)
<---------
ANAC58
---->
ARR14(2)
<---------
ANAC46
-
ZmHOX2a(1)
<---------
ANAC58
<---------
ANAC46
--------->
WOX13(1)
XXXXXXXXXXXXX>
MIR866-5P
<---------
YAB1
<------
MYB83
<---------
MYB52(1)
<------
--
TOE2(3)
<---------
ARR14(2)
<---------
ANAC46
------>
ZmHOX2a(2)
>
MYB52(1)
--------->
ARR14(2)
<------
MYB46(1)
<---------
At4g35610
tcggtttttgttaacggttctatcgaatatgaagattgcttttaggttgagtaatgcccatttggtgtatttctgttatttatctgatctatcaatgtta
18578000
<---------
YAB1
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
----------->
GT1
<
--------->
TOE1(3)
----------->
GT1
-
--------->
TOE2(3)
---------->
DOF2
<-
<---------
HSFB2a(2)
----------->
GT1
--------->
AHL20(2)
----
---
YAB1
--------->
HSFB2a(2)
--------->
TOE2(3)
---------->
DOF2
<------
ttgtttgaaaatgctatgtcaaattttcagaaccctaaattatatttatctcaaacaatagaattgttg
aaaagaaaagataaaaatagtttctgccttt
18578100
<-------
GAMYB
<---
<------
MYB83
<---
<------
MYB46(1)
<-----
--------->
MYB59
<------
MYB46(1)
<---------
MYB52(1)
<---------
ARR14(2)
<------
MYB83
---------
ICU4
--------->
ARR14(2)
----------->
GT1
---------
-------->
ATHB12
<-----------
GT1
<---------
At5g28300
--------------->
AtSPL8
---------
--------
YAB1
--------->
YAB1
<-----------
GT1
<---------------
AtSPL8
---------
----->
YAB1
<---------
MYB46(3)
<---------
ANAC58
<---------
TOE2(3)
<---------
MYB52(1)
----
DOF2
<---------
AtMYB61
<---------
ANAC58
<-------
TEIL
<---------
ANAC46
<---------
GLK1(1)
gatgatttcagtttggttgaacataattttcggtttgatttcgtttcaccgtatcggttcattttggttaagtggtactaaaatcgatttctgttaggtt
18578200
--------->
LBD16
<---------
LBD16
--------->
ARR11(3)
<-----------
RAV1(1)
--------->
ARR14(2)
<----------
DOF2
---
MYB83
<---------
ARR14(2)
--------------->
AGL15
---
MYB46(1)
--------->
CCA1(1)
<---------
MYB52(1)
---
P
---------->
ID1
--------->
MYB52(1)
--------->
RVE1(1)
<-------
GAMYB
----------
>
MYB111(1)
--------------->
AtSPL8
<---------
GLK1(1)
<---------
ANAC46
<---------
At4g35610
>
MYB59
<---------------
AtSPL8
<---------
MYB59
--------->
MYB52(2)
--------->
At4g35610
>
MYB46(2)
<---------
AHL20(2)
<------
ZmHOX2a(1)
<---------
AtMYB61
<---------
DAG2
-
ggaattttgttgtttcgatttttttggtacaaaaccgaaggattaccaaaatatccggtttagttttggtttgtttcggttagccttttttagctcaatt
18578300
--------->
RAP2.6(2)
----------->
RAV1(1)
--------->
ZAT18
--------->
ANAC58
<------
NtERF2
--------->
ANAC58
--------->
LBD16
<---------
At4g35610
-------
--------->
DEAR3(1)
--------->
At4g35610
--------
<---------
LBD16
--------->
ANAC58
<---------
ZAT2
<-------
--------->
MYB46(3)
--------->
ANAC58
--------->
ZAT2
<--------
-->
CBF
------------>
CBF
--------->
SPL7
--------->
ANAC58
---------
-------->
ARR11(3)
------->
GAMYB
*
TSS
<---------
MYB52(1)
--------->
ANAC58
<---------
ATHB12
tagagcttgaaactgagcaatcgccggagaaactctc
actcacagtt
atggctacggcaatggaagagccaaggaagctgagaggccacaaatcaactgc
18578400
<---------
ANAC46
--------->
DEAR3(2)
------
----------->
HVH21
<-----
>
GAMYB
--------->
O2
------->
TEIL
->
MYB46(3)
<---------
GLK1(2)
--------->
TOE2(3)
<---------
At4g35610
-----
AtMYB77
<---------
O2
--------->
LBD16
--------->
At4g35610
-
At4g35610
<---------
ANAC58
------>
NtERF2
<-----------
GT1
>
At4g35610
<---------
ANAC58
<---------
LBD16
<----------
DOF2
<-----
cacttgttgtatagcttctcgtgaccggcctggaattgttctcacttccggcgag
gtttcttaatctctaattcaaacctcttttttccgatgaatttag
18578500
<-------
GAMYB
<---------
MYB46(3)
<------
ZmHOX2a(1)
<---------
YAB1
--------->
TOE2(2)
<---------
ANAC58
<---------
YAB1
--------->
TOE1(2)
<---------
ANAC58
<---------
MYB52(1)
<------
ZmHOX2a(2)
<------
MYB46(1)
--------->
ICU4
--->
MYB59
--------->
YAB1
--------->
YAB1
<------
MYB83
---------->
DOF2
----
TOE1(3)
<-------
TEIL
<---------
ATHB12
<---------
AtMYB61
--------->
ATHB12
<---------
ARR11(3)
----
TOE2(3)
<-----------
GT1
=====================
HOX2a_HOX2a
----------->
ARR10
--------->
ARR11(3)
gtttcgttattgtagttacttcgcaagattcatagttttccgatcatacgattatag
gatggttgcatttgctggtttgatttgcgatgtaaagatgttc
18578600
<----------
DOF2
<---------
YAB1
<---------
CCA1(2)
---------->
ID1
<-------
--------->
YAB1
<-------
TEIL
--------->
ANAC46
<----------
DOF2
<----------
DOF2
aattcatcatcgatgttggaacagaaccagtttcatctctttgtttcaagacag
gttttgtctctttgtgttttgtctgtttctctctctttcaatttct
18578700
--------->
KAN4(2)
<---------
KAN4(1)
<---------
HSFC1(2)
--------->
HSFC1(2)
--------->
HSFB2a(1)
--------->
KAN4(1)
<---------
HSFB2a(1)
--------->
YAB1
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC58
<------
MYB83
<---------
TOE1(3)
<---------
ARR14(2)
<------
MYB46(1)
<---------
TOE2(3)
<---------
HSFB2a(2)
---------->
ID1
<---------------
AGL15
<---------------
AGL15
<-----------
RAV1(1)
==============================================
MADS_MADS
<----------
DOF2
<----------
DOF2
<-----------
RAV1(2)
--------------->
AGL15
-
--
ARR11(3)
----------->
GT1
<---------
AHL20(2)
<---------
KAN4(2)
--------->
HSFB2a(2)
<----
tctctttgttgcaatttggtgataacttttatttgatttttcag
gtaatgagaacattctctatgcttcttgtggaaacgaaatcaagtctttcgatgtt
18578800
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AGI:
At5g45750.1
Description:
AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding. similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to putative GTP-binding protein [Gossypium hirsutum] (GB:AAT64010.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, inter
Range:
from: 18576343
to: 18578069
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g45760.1
Description:
transducin family protein / WD-40 repeat family protein. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G11160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48027.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:
from: 18578338
to: 18580422
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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