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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
GT1
<----------
DOF2
<---------
DAG2
---
<---------
AHL20(2)
<-----------
GT1
--------->
ATHB12
<------
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
YAB1
--------->
DAG2
--------->
GLK1(2)
<---------
TOE2(3)
<---------
ICU4
---------->
DOF2
<---------
GLK1(2)
<---------
GLK1(1)
--------->
AHL20(2)
<---------
YAB1
-------
gattttaagaacaaatgactagaatcttttaaattttgaattccctataatttaggaaattaactttttacaaaatcatgaatggatgaaaaagtggatt
18575900
<-------
--------
--------->
LBD16
<---------
GLK1(1)
<------
ZmHOX2a(2)
--------->
GLK1(1)
<-----------
ARR10
--------->
AGP1
--------->
ARR14(3)
--------->
ANAC58
<---------
AGP1
<----
--------->
ANAC58
--------->
ARR14(2)
---------->
DOF2
<---------------
AtSPL8
<---------
ARR14(2)
--------->
YAB1
--------->
TOE2(3)
<---------
ARR11(3)
-------->
GT1
<----------
DOF2
----------->
GT1
--------->
LBD16
---
ARR14(2)
--------->
TOE1(3)
---------->
DOF2
------>
ZmHOX2a(2)
-->
ARR14(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
MYB46(3)
--------->
ARR11(3)
ttgtaaaatcaaaagccaaaatcaactttaaaaactagtaccattcaaggccttagtttgttagagagaagaaagtgaaaacagatctccccgattttat
18576000
<--
<--
xxx
xxxxx
xxxxx
<----
xxxxx
<-----
<-------
--------
xxxxxxxx
xxxxxxxx
<--------
xxxxxxxxxxx
--------->
YAB1
<------
ZmHOX2a(1)
xxxxxxxxxxx
xxxxxxxxxxxxx
xxxxxxxxxxxxx
xxxxxxxxxxxxx
xxxxxxxxxxxxx
xxxxxxxxxxxxx
xxxxxxxxxxxxxx
xxxxxxxxxxxxxx
xxxxxxxxxxxxxx
xxxxxxxxxxxxxxx
<---------
MYB52(1)
xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxx
<---------
MYB46(3)
xxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ZAT14
----------->
GT1
<---------
ZAT14
xxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
*
TSS
xxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<-----------
TGA1
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
bZIP60(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
bZIP60(1)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
bZIP60(1)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ANAC55(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
O2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ANAC58
xxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
TGA1a
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
ANAC55(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
TGA1a
xxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
O2
xxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ZAT14
xxxxxxxxxxxxxxxx>
smallRNA(se3)
<----------
DOF2
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
=====================
bZIP_DOF
<---------
At4g35610
xxxxxxxxxxxxxx
<---------
DAG2
<---------
YAB1
<------
NtERF2
xxxxxxxxxxxxxxxxxxxx
----------------------->
TaNAC69(2)
<-----------
HVH21
xxxxxxxxxxxxxxxxxxxx
<-----------
GT1
<-----------
HVH21
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxxx
--
AHL20(2)
<-----------
STF1
----------->
GT1
--------------------->
WRI1
xxxxxxxxxxxxxxxxxxxxxxx
->
AHL20(2)
<---------
ANAC58
<---------
LBD16
<---------
CCA1(2)
<-----------
TGA1
--------->
MYB52(1)
-------
TBP
<---------
ANAC58
<---------
YAB1
<---------
AHL20(2)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxxx
ttatagtcactttacttgccacgtcatattattctggattagtatattatatctgtttgaattaatcgtca
gcgtctgtagtccaacggttaggataatt
18576100
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
ATHB12
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
AtLEC2
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
-------
ANAC58
-------
ANAC58
xxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxx>
smallRNA(si3)
-------
GT1
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxx>
smallRNA(se3)
----
WOX13(1)
--
ICU4
xxxxxxxxxxxxxxxx>
smallRNA(le3)
->
ATHB12
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxx>
smallRNA(si3)
-
YAB1
xxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxx>
smallRNA(se3)
xxxxxxx>
smallRNA(se3)
xxxxx>
smallRNA(le3)
xxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxx>
smallRNA(se3)
xxx>
smallRNA(fl3)
xx>
smallRNA(fl3)
xxxxxxx>
smallRNA(fl3)
xxxxxxx>
smallRNA(fl3)
xx>
smallRNA(fl3)
xxxxxx>
smallRNA(fl3)
x
smallRNA(i)
x>
smallRNA(fl3)
xxxxxxx>
smallRNA(fl3)
xx>
smallRNA(fl3)
xxxxx>
smallRNA(se3)
xx>
smallRNA(si3)
xxxxxx>
smallRNA(se3)
x>
smallRNA(si3)
--------->
ANAC58
xx>
smallRNA(l2)
<------
NtERF2
x>
smallRNA(l2)
------>
NtERF2
xxxxxx>
smallRNA(si3)
<-----------
HVH21
x>
smallRNA(si3)
--------->
ANAC46
>
smallRNA(i2)
--------->
LBD16
xx>
smallRNA(fl3)
<---------
LBD16
<----------
DOF2
x>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
x>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
AHL20(2)
x>
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
YAB1
x>
smallRNA(l2)
<---------
LBD16
--------->
LBD16
<---------
YAB1
<----------
ID1
x>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<-----------
GT1
---------->
DOF2
x>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(se3)
<-----------
GT1
--------->
ARR11(3)
x>
smallRNA(se3)
--------->
LBD16
--------->
ANAC58
--------->
AHL20(2)
---------->
DOF2
---------
gccttccaagcaatagacccgggttcgactcccggcagacgca
ttcttttttatcattttaatcagtttagaaaaacataaaagataaagacaaatgtga
18576200
<---------------------
WRI1
---------->
ID1
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
ANAC55(2)
----------->
GT1
--------->
ARR14(2)
<---------
ZAT2
<---------
ZAT14
<----
<---------
ARR14(2)
--------->
ANAC58
--------->
ZAT14
--------->
ANAC58
<---------
TOE2(3)
<----------
DOF2
<------
ZmHOX2a(2)
<---------
ZAT18
--------->
ANAC58
-->
GT1
<---------
ANAC55(2)
--------->
ANAC58
--------->
DOF5.7(2)
----------->
RAV1(1)
<
attgacgaatacgtcctcgtctttatcgaagcgagcaaggtaatagatcagaacgcgttaacagggcagtttagtaaatttggccacacaaatgttagat
18576300
--------->
LBD16
<---------
ANAC58
---------->
ID1
<---------
ANAC58
<---------
ZAT18
<---------
LBD16
---------->
DOF2
<----------
DOF2
<---------
ARR14(2)
<---------
YAB1
------>
ZmHOX2a(1)
--------->
ARR14(2)
-
-----
GLK1(1)
--------->
ZAT14
*
TSS
<-----------
GT1
<-------
GAMYB
<
----------
DOF2
<---------
ZAT14
<----------
DOF2
<-----------
GT1
<----------
DOF2
----------->
GT1
<
ttctttgtgataaagacagtacacaagtcctttgtctttctc
gtttgatattttccaattccgcgtctttctctgttgaaatcgaaaaaattttcaaaac
18576400
---------->
DOF2
<
<------
ZmHOX2a(1)
-
----------->
GT1
-
<---------
TOE2(3)
-
<---------
TOE1(3)
<-----------
GT1
<----
-------->
GLK1(2)
<---------
CCA1(2)
--------->
PCF2
-----
---------
ARR11(3)
----------->
RAV1(1)
---------->
DOF2
<-----------
GT1
-----
-----------
ARR10
<----------
ID1
<-----------
GT1
<------
ZmHOX2a(1)
<----------
DOF2
<-
aaaatctaaggaaaaaagagcaacaagtttcaaatctcatttgggtttttcattttgaaaagaaggacccatttttatctctctctttgttttgttttct
18576500
----------->
GT1
<------
ZmHOX2a(1)
<------
NtERF2
<XXXXXXXXXXXXXXXXXXXX
MIR783
--------->
LBD16
---
---------
ARR14(2)
<---------
MYB46(3)
<--
-------->
GLK1(2)
<---------
ANAC46
<--
------>
TEIL
---------->
DOF2
<---------
ANAC58
<---------
ANAC55(2)
<--
-------->
ARR14(2)
<---------
ANAC58
<---------
YAB1
<-------
-----
HSFB2a(2)
<---------
LBD16
--------->
At4g35610
<---------
MYB46(3)
---->
HSFB2a(2)
<----------
DOF2
--------->
ATHB12
<---------
At4g35610
<---------
TOE1(3)
---->
HSFC1(1)
----------->
GT1
<------
ZmHOX2a(1)
<-------
GAMYB
<---------
YAB1
<---------
TOE2(3)
--------
CCA1(2)
---------->
DOF2
--------->
GLK1(2)
<---------
At4g35610
--------->
ANAC55(2)
<-----
cgaatctgaaggagtaaagttaaaagctttgaaggagagaatca
atggcgggttacagagcagatgatgaatacgattacctattcaaggttgttctgat
18576600
--------->
ZAT18
--------->
ALFIN1
<-----------
RAV1(2)
------>
ANAC55(2)
<----------
DOF2
------>
ZmHOX2a(2)
----
MYB46(1)
<---------
ARR14(2)
<------
ZmHOX2a(2)
----
MYB83
--------->
ALFIN1
<---------
ANAC58
<---------
ARR14(2)
-------
ANAC55(2)
--------->
ARR14(2)
<---------
ZAT14
--------->
ARR14(2)
--
YAB1
<---------
At4g35610
<---------
ANAC58
--------->
ZAT14
<---------
ARR14(2)
----
MYB52(1)
--------->
GLK1(1)
--------->
ANAC46
--------->
ARR14(2)
aggtgattcaggtgtgggcaaatccaatttgctttcacgattcacgaagaacgagtttagtctcgagtcaaaatccacgatcggggtcgagttcgcgact
18576700
<---------
At4g35610
<-----------
RAV1(1)
--------->
CCA1(2)
<----------
DOF2
--
---------->
DOF2
--------->
ARR14(2)
<---------
ARR11(3)
<---
<---------
YAB1
<---------
ARR14(2)
--------->
ARR11(3)
-------
--------->
DAG2
<---------
ARR14(2)
---------->
DOF2
<---------
ALFIN1
<---
---------->
DOF2
--------->
ARR14(2)
--------->
ANAC58
------->
GAMYB
<------
--------->
YAB1
<---------
GLK1(2)
--------->
ANAC58
--------->
MYB46(3)
----
<---------
YAB1
----------->
ARR10
--------->
WRKY18(1)
<-----------
GT1
<-------
cggagtttgaatgttgatgataaagtcatcaaagctcagatttgggatactgctggtcaagaaag
gtctcatctttttcaaccacattgttcatttctcg
18576800
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AGI:
At5g45745.1
Description:
pre-tRNA. tRNA-Gly (anticodon: TCC)
Range:
from: 18576072
to: 18576143
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g45750.1
Description:
AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding. similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to putative GTP-binding protein [Gossypium hirsutum] (GB:AAT64010.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, inter
Range:
from: 18576343
to: 18578069
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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