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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                <-----------GT1
                                                            <----------DOF2
                                                            <---------DAG2                       ---
                          <---------AHL20(2)             <-----------GT1   --------->ATHB12  <------
                         --------->AHL20(2)        <------ZmHOX2a(1)    --------->YAB1 --------->DAG2
                   --------->GLK1(2)             <---------TOE2(3)      <---------ICU4---------->DOF2
                  <---------GLK1(2)<---------GLK1(1)    --------->AHL20(2)<---------YAB1     -------
 
gattttaagaacaaatgactagaatcttttaaattttgaattccctataatttaggaaattaactttttacaaaatcatgaatggatgaaaaagtggatt  18575900
                                                                                            <-------
                                                                                            --------
                                                                                       --------->LBD16
                                                                                 <---------GLK1(1)
                                                                                 <------ZmHOX2a(2)
                                                                                 --------->GLK1(1)
                                                                                <-----------ARR10
                                                                                --------->AGP1
                                                                                --------->ARR14(3)
         --------->ANAC58                                                       <---------AGP1 <----
         --------->ANAC58                                                       --------->ARR14(2)
       ---------->DOF2         <---------------AtSPL8                           <---------ARR14(2)
     --------->YAB1   --------->TOE2(3)                                         <---------ARR11(3)
-------->GT1          <----------DOF2                                ----------->GT1  --------->LBD16
---ARR14(2)           --------->TOE1(3)                            ---------->DOF2------>ZmHOX2a(2)
-->ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(i)              <---------MYB46(3)        --------->ARR11(3)
 
ttgtaaaatcaaaagccaaaatcaactttaaaaactagtaccattcaaggccttagtttgttagagagaagaaagtgaaaacagatctccccgattttat  18576000
                                                                                                 <--
                                                                                                 <--
                                                                                                 xxx
                                                                                               xxxxx
                                                                                               xxxxx
                                                                                               <----
                                                                                               xxxxx
                                                                                              <-----
                                                                                            <-------
                                                                                            --------
                                                                                            xxxxxxxx
                                                                                            xxxxxxxx
                                                                                           <--------
                                                                                         xxxxxxxxxxx
                                                                                         --------->YAB1
                                                                                         <------ZmHOX2a(1)
                                                                                         xxxxxxxxxxx
                                                                                       xxxxxxxxxxxxx
                                                                                       xxxxxxxxxxxxx
                                                                                       xxxxxxxxxxxxx
                                                                                       xxxxxxxxxxxxx
                                                                                       xxxxxxxxxxxxx
                                                                                      xxxxxxxxxxxxxx
                                                                                      xxxxxxxxxxxxxx
                                                                                      xxxxxxxxxxxxxx
                                                                                     xxxxxxxxxxxxxxx
                                                                                     <---------MYB52(1)
                                                                                     xxxxxxxxxxxxxxx
                                                                                     xxxxxxxxxxxxxxx
                                                                                    <xxxxxxxxxxxxxxx
                                                                                   <---------MYB46(3)
                                                                                   xxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                 xxxxxxxxxxxxxxxxxxx
                                                                                 xxxxxxxxxxxxxxxxxxx
                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)
                                                                                 xxxxxxxxxxxxxxxxxxx
                                                                             xxxxxxxxxxxxxxxxxxxxxxx
                                                                             xxxxxxxxxxxxxxxxxxxxxxx
                                                                            xxxxxxxxxxxxxxxxxxxxxxxx
                                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx
                                                                         xxxxxxxxxxxxxxxx>smallRNA(s)
                                                                         xxxxxxxxxxxxxxxx>smallRNA(i)
                                                                         xxxxxxxxxxxxxxx>smallRNA(le3)
                                                                         xxxxxxxxxxxxxxx>smallRNA(si3)
                                                                         xxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                         --------->ZAT14----------->GT1
                                                                         <---------ZAT14xxxxxxxxxxxx
                                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                        xxxxxxxxxxxxxxxx>smallRNA(s)
                                                                        xxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                        xxxxxxxxxxxxxxxx>smallRNA(i)
                                                                        xxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                        xxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                        xxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                       *TSS xxxxxxxxxxxxxxxxxxxxxxxx
                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxx>smallRNA(le3)
                                                                       xxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                       xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                  <-----------TGA1                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                 --------->bZIP60(2)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                 <---------bZIP60(1)                                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                 --------->ANAC46                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                 --------->bZIP60(1)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                 --------->ANAC58                                      xxxxxxxxxxxxxxxx>smallRNA(s)
                 --------->ANAC55(2)                                   xxxxxxxxxxxxxxxx>smallRNA(i)
                 <---------O2                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                 --------->ANAC58                                      xxxxxxxxxxxxxxxxxx>smallRNA(le3)
                 <---------TGA1a                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                 <---------ANAC55(2)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                 --------->TGA1a                                       xxxxxxxxxxxxxxxxx>smallRNA(le3)
                 --------->O2                                          xxxxxxxxxxxxxxx>smallRNA(se3)
       --------->ZAT14                                                 xxxxxxxxxxxxxxxx>smallRNA(se3)
      <----------DOF2   <---------AHL20(2)                            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
      =====================bZIP_DOF                                <---------At4g35610xxxxxxxxxxxxxx
      <---------DAG2    <---------YAB1                             <------NtERF2xxxxxxxxxxxxxxxxxxxx
    ----------------------->TaNAC69(2)                         <-----------HVH21xxxxxxxxxxxxxxxxxxxx
   <-----------GT1<-----------HVH21                       <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxxx
--AHL20(2)      <-----------STF1    ----------->GT1--------------------->WRI1xxxxxxxxxxxxxxxxxxxxxxx
->AHL20(2)<---------ANAC58   <---------LBD16 <---------CCA1(2) <-----------TGA1 --------->MYB52(1)
-------TBP<---------ANAC58 <---------YAB1   <---------AHL20(2)--------->YAB1xxxxxxxxxxxxxxxxxxxxxxxx
 
ttatagtcactttacttgccacgtcatattattctggattagtatattatatctgtttgaattaatcgtcagcgtctgtagtccaacggttaggataatt  18576100
         xxxxxxxxxxxxxxxx>smallRNA(i)
         xxxxxxxxxxxxxxxx>smallRNA(s)
         xxxxxxxxxxxxxxx>smallRNA(le3)
         xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
         xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
     xxxxxxxxxxxxxxxx>smallRNA(s)
     <---------ATHB12
    --------->ANAC46
    --------->ANAC58
    --------->ANAC58
    --------->AtLEC2
    xxxxxxxxxxxxxxxx>smallRNA(s)
 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
 xxxxxxxxxxxxxxxx>smallRNA(i)
xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
-------ANAC58
-------ANAC58
xxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxx>smallRNA(si3)
-------GT1xxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxx>smallRNA(se3)
----WOX13(1)
--ICU4   xxxxxxxxxxxxxxxx>smallRNA(le3)
->ATHB12 xxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxx>smallRNA(si3)
-YAB1xxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxx>smallRNA(le3)
xxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxx>smallRNA(se3)
xxxxxxx>smallRNA(se3)
xxxxx>smallRNA(le3)
xxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxx>smallRNA(se3)
xxx>smallRNA(fl3)
xx>smallRNA(fl3)
xxxxxxx>smallRNA(fl3)
xxxxxxx>smallRNA(fl3)
xx>smallRNA(fl3)
xxxxxx>smallRNA(fl3)
xsmallRNA(i)
x>smallRNA(fl3)
xxxxxxx>smallRNA(fl3)
xx>smallRNA(fl3)
xxxxx>smallRNA(se3)
xx>smallRNA(si3)
xxxxxx>smallRNA(se3)
x>smallRNA(si3)                    --------->ANAC58
xx>smallRNA(l2)               <------NtERF2
x>smallRNA(l2)               ------>NtERF2
xxxxxx>smallRNA(si3)         <-----------HVH21
x>smallRNA(si3)             --------->ANAC46
>smallRNA(i2)               --------->LBD16
xx>smallRNA(fl3)           <---------LBD16<----------DOF2
x>smallRNA(fl3)           xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)
x>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)    <---------AHL20(2)
x>smallRNA(i2)     xxxxxxxxxxxxxxxx>smallRNA(s)   --------->YAB1
x>smallRNA(l2)<---------LBD16--------->LBD16     <---------YAB1                     <----------ID1
x>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------GT1                   ---------->DOF2
x>smallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(se3)<-----------GT1                  --------->ARR11(3)
x>smallRNA(se3) --------->LBD16    --------->ANAC58   --------->AHL20(2)    ---------->DOF2---------
 
gccttccaagcaatagacccgggttcgactcccggcagacgcattcttttttatcattttaatcagtttagaaaaacataaaagataaagacaaatgtga  18576200
                     <---------------------WRI1
               ---------->ID1
            ------>ZmHOX2a(1)                                          <---------AHL20(2)
       --------->ANAC55(2)                                          ----------->GT1
    --------->ARR14(2)        <---------ZAT2                      <---------ZAT14              <----
    <---------ARR14(2)       --------->ANAC58                     --------->ZAT14 --------->ANAC58
<---------TOE2(3)<----------DOF2           <------ZmHOX2a(2) <---------ZAT18      --------->ANAC58
-->GT1 <---------ANAC55(2)   --------->ANAC58        --------->DOF5.7(2)        ----------->RAV1(1)<
 
attgacgaatacgtcctcgtctttatcgaagcgagcaaggtaatagatcagaacgcgttaacagggcagtttagtaaatttggccacacaaatgttagat  18576300
                                                          --------->LBD16
                                                         <---------ANAC58
                              ---------->ID1             <---------ANAC58
                <---------ZAT18                         <---------LBD16
       ---------->DOF2    <----------DOF2             <---------ARR14(2)
   <---------YAB1         ------>ZmHOX2a(1)           --------->ARR14(2)                           -
-----GLK1(1)    --------->ZAT14           *TSS   <-----------GT1      <-------GAMYB                <
----------DOF2  <---------ZAT14 <----------DOF2 <-----------GT1<----------DOF2----------->GT1      <
 
ttctttgtgataaagacagtacacaagtcctttgtctttctcgtttgatattttccaattccgcgtctttctctgttgaaatcgaaaaaattttcaaaac  18576400
          ---------->DOF2                                                                          <
      <------ZmHOX2a(1)                                                                            -
     ----------->GT1                                                                               -
    <---------TOE2(3)                                                                              -
    <---------TOE1(3)                                                   <-----------GT1        <----
-------->GLK1(2)            <---------CCA1(2)                 --------->PCF2                   -----
---------ARR11(3)----------->RAV1(1)                  ---------->DOF2  <-----------GT1         -----
-----------ARR10<----------ID1              <-----------GT1  <------ZmHOX2a(1)   <----------DOF2  <-
 
aaaatctaaggaaaaaagagcaacaagtttcaaatctcatttgggtttttcattttgaaaagaaggacccatttttatctctctctttgttttgttttct  18576500
        ----------->GT1
       <------ZmHOX2a(1)                      <------NtERF2
 <XXXXXXXXXXXXXXXXXXXXMIR783                 --------->LBD16                                     ---
---------ARR14(2)                            <---------MYB46(3)                                  <--
-------->GLK1(2)                            <---------ANAC46                                     <--
------>TEIL---------->DOF2                  <---------ANAC58               <---------ANAC55(2)   <--
-------->ARR14(2)                           <---------ANAC58         <---------YAB1         <-------
-----HSFB2a(2)                             <---------LBD16--------->At4g35610          <---------MYB46(3)
---->HSFB2a(2)         <----------DOF2--------->ATHB12    <---------At4g35610      <---------TOE1(3)
---->HSFC1(1)----------->GT1  <------ZmHOX2a(1)<-------GAMYB   <---------YAB1      <---------TOE2(3)
--------CCA1(2)   ---------->DOF2   --------->GLK1(2)  <---------At4g35610 --------->ANAC55(2)<-----
 
cgaatctgaaggagtaaagttaaaagctttgaaggagagaatcaatggcgggttacagagcagatgatgaatacgattacctattcaaggttgttctgat  18576600
           --------->ZAT18
        --------->ALFIN1
    <-----------RAV1(2)
------>ANAC55(2)            <----------DOF2                                  ------>ZmHOX2a(2)
----MYB46(1)     <---------ARR14(2)                                         <------ZmHOX2a(2)
----MYB83 --------->ALFIN1 <---------ANAC58                                <---------ARR14(2)
-------ANAC55(2) --------->ARR14(2)                 <---------ZAT14        --------->ARR14(2)
--YAB1<---------At4g35610  <---------ANAC58         --------->ZAT14 <---------ARR14(2)
----MYB52(1)    --------->GLK1(1)       --------->ANAC46            --------->ARR14(2)
 
aggtgattcaggtgtgggcaaatccaatttgctttcacgattcacgaagaacgagtttagtctcgagtcaaaatccacgatcggggtcgagttcgcgact  18576700
                                               <---------At4g35610
                                              <-----------RAV1(1)
                                    --------->CCA1(2)                <----------DOF2              --
                          ---------->DOF2 --------->ARR14(2) <---------ARR11(3)                 <---
                        <---------YAB1    <---------ARR14(2) --------->ARR11(3)              -------
                  --------->DAG2   <---------ARR14(2)    ---------->DOF2      <---------ALFIN1  <---
                 ---------->DOF2   --------->ARR14(2)  --------->ANAC58       ------->GAMYB  <------
              --------->YAB1       <---------GLK1(2)   --------->ANAC58      --------->MYB46(3) ----
             <---------YAB1      ----------->ARR10  --------->WRKY18(1)    <-----------GT1  <-------
 
cggagtttgaatgttgatgataaagtcatcaaagctcagatttgggatactgctggtcaagaaaggtctcatctttttcaaccacattgttcatttctcg  18576800
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AGI:  At5g45745.1   
Description:  pre-tRNA. tRNA-Gly (anticodon: TCC)
Range:  from: 18576072    to: 18576143    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At5g45750.1   
Description:  AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding. similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to putative GTP-binding protein [Gossypium hirsutum] (GB:AAT64010.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, inter
Range:  from: 18576343    to: 18578069    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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