Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------ICU4                                                ------>ZmHOX2a(1)                                      ------>ZmHOX2a(1)         <---------ZAT2             ----------->RAV1(2)         --------->ZAT2           --------->ARR14(2)                     <---------TOE1(2)        <---------TOE1(2)         --------->ARR11(3)                     <---------TOE2(2)     <-----       ------>ZmHOX2a(1)          <---------ARR14(2)              <---------ALFIN1            -------  --------->DEAR3(1)             <---------CCA1(2)     ------>ZmHOX2a(1)------>ZmHOX2a(1)    -------- ----->NtERF2                  --------->YAB1  <---------MYB59  <-----------HVH21           --------- ------->ANAC46          <----------DOF2   <----------DOF2 <---------ZAT18                  <-------- ------->ANAC58       --------->ARR11(3) --------->At4g35610   --------->AtMYB61            <-------- ------->ANAC58       <---------ARR11(3) <---------At4g35610<---------ALFIN1           <----------DOF2   gacgccatcctagcttagagagaagagctttattcatatcctgagctttcctaattcctagcccaccttcactcctaggtttacaaactcttttccagga  18277300                                                                                                <----   --------->ARR11(3)                --------->YAB1                                         <-------- -ZmHOX2a(1)                    ----------->RAV1(1)                                     ------------>CBF -->ANAC46                 --------->ZAT2    <------ZmHOX2a(2)                       ---------->DOF2 ->LBD16<---------At4g35610<---------At4g35610        <----------DOF2           --------->RAP2.6(3) >HSFB2a(2)                <---------ZAT2   <---------ARR11(3)           --------->TOE2(3)  <-------- -HSFB2a(2)   <----------DOF2 ------>NtERF2 --------->ARR11(3)      <---------MYB55(2) --------->ANAC58 -LBD16 --------->At4g35610--------->At4g35610 <---------HSFB2a(2)  --------->MYB46(3) --------->ANAC58   aataagatgctgcttcctttgagttacagagctgccccataagaacgatctagacactttgtctaacccatccaacgttgatttcggcaaagcaatggtg  18277400                                                          ------------>CBF                                                         --------->ANAC58                                                      --------->LBD16              <---------ARR14(2)                     --------->ANAC58                             <--              --------->ARR14(2)<---------ANAC58     --------->ANAC46                             <--          <---------LBD16       <---------ANAC46     --------->ANAC58                         <------       <---------ZAT14  --------->ANAC58            --------->LBD16                          --------      ----------->HVH21 --------->ANAC58      --------->ZAT6      <----------DOF2           <--------    <---------ANAC46--------->ANAC46        <-----------GT1    <---------ARR11(3)           --------- -----At4g35610 --------->DEAR3(2)       <---------ZAT6  --------->ANAC46           --------->TOE2(3) -ATHB12 ------->TEIL ---------->DOF2  <---------ANAC46  --------->ANAC58           <----------DOF2 ---RAV1(1) --------->LBD16     <---------ANAC58    <---------LBD16     <---------AHL20(2) <---------   ctcatggtgtgaaccggaatcgacgaaagcactgccttggtgagtgtaactctccccgcaagcaatgtctttgttttattttgctactttagtctttatt  18277500                                                                           --------->ANAC55(2)  --------->MYB52(2)                                                       <---------ANAC55(2) <---------AtMYB61                                                         <---------ANAC46 -------ANAC58                                                            <---------LBD16 -------ANAC58                                   --------->AHL20(2)     --------->WRKY18(1) ------CBF     <------MYB46(1)               ----------->GT1            ----------->HVH21           - ->ATHB12      <------MYB83          <---------TOE2(3)                 <-----------HVH21            - -YAB1       <--------P             ---------->DOF2   <-------TEIL    ------->GAMYB    --------->TOE2(3) >ICU4    <---------ZAT6   <-----------GT1 <---------TOE2(3)       --------->MYB52(1)  --------->TOE1(3) -DOF2<---------SPL7 <---------AHL20(2)    <---------TOE1(3)      --------->MYB46(3)<-----------GT1 <   gggtttgtggtactggtaggggtttaatttttcaaaactaaagttaagggtttaaattcatgttgttaacaacggtcacgggtttataaccttaaaaaat  18277600                                         ------>MYB46(1)                                       <---------MYB59                                   ----------->HVH21                                         ------>ZmHOX2a(2)                                 <---------bZIP60(2)                                        <------ZmHOX2a(2)                                 <---------O2                                              <---------AGP1                                 --------->bZIP60(1)                                       <---------ARR14(2)     --------->LBD16          ----------->HVH21                --------->At4g35610         --------->ARR14(2)   --------->ANAC46       <---------ANAC46                   <------NtERF2                 <---------ARR11(3)  <---------At5g28300     <---------ANAC58          <---------DAG2                         --------->ARR14(3) -------->ZAT18           <---------ANAC58        <---------At4g35610                      --------->ARR11(3) -------->ZAT14         ------>ZmHOX2a(1)------>MYB83      <---------DEAR3(1)              <---------ARR14(3) ---------ZAT14<------ZmHOX2a(1) <---------bZIP60(1)<----------DOF2                      ----------->ARR10   agttcaccgcatatttaggacaggtcctgcttgtgacatgacctactaactcagcttttcgtcggagatgaattcagtagaagcagtagagaagatcttg  18277700                                                                                 ------>NtERF2                                                                                <---------DEAR3(1)                                    <-----------HVH21                           --------->DEAR3(1)                                 <---------At4g35610                    <---------ARR11(3)                                 --------->At4g35610              <---------ANAC58        <---------ANAC58        --------->ANAC58           ----------->HVH21 <---------DEAR3(1)        <---------ANAC58        --------->ANAC58     <----------DOF2    --------->ARR11(3)        <---------ANAC46    --------->ANAC58   --------->ARR11(3) <---------ANAC58                  <        <---------ANAC55(2) --------->ANAC58   <---------ARR11(3) --------------------->WRI1  <------   aactacagtttcgtgaacaagactcttctcaaggaagctatcacacaaaaatctcctttattcgaccggcttgagttcttcggcgactctattcttgagg  18277800                                                               --------->ZAT18                                                              <---------ANAC58                                                          <---------ANAC46                                                          <---------ANAC58                                                       ----------->HVH21                             --------->TOE2(3)       <---------ANAC58                             --------->TOE1(3)       <---------ANAC46                    <---------ALFIN1                 <---------AtLEC2                    ----------->RAV1(1)              <---------ANAC58               =================RAV              <---------GLK1(1)                                ---               <---------At4g35610         <<<<<<<<<WRKY18<---------ANAC58                        <--               ----------->RAV1(2) --------->TOE2(3) --------->ANAC55(2)                         <---        <---------ICU4<---------ALFIN1    --------->WRKY18(1) <---------ANAC58            --------->ZAT18 ------NtERF2  --------->At4g35610 --------->TOE1(3) <---------ANAC55(1)                  <---------ZAT18 ---AtMYB61<-----------GT1 -------->P ---------->DOF2<---------ANAC55(2)                 ------------   tcgccttcactaattacatctgccacacttaccctaacctcaaagtcaaggagttgcgtgacttgcgaactgcaaatgttagtaacgagaagttcgctcg  18277900          --------->YAB1                                                                --------->TOE2(3)         <---------ATHB12                                                              <--------HAHB4       --------->WOX13(1)                                                              --------->ATHB12     <---------MYB52(1)                                                                --------->YAB1     <------NtERF2                                                                     <---------ICU4    ------>NtERF2                                                                      -------->ATHB1    <-----------HVH21                                                                 --------->ICU4    <---------RAP2.6(3)                                                             --------->YAB1   --------->DEAR3(1)                                 --------->AHL20(2)         --------->HSFB2a(2)   --------->RAP2.3(3)                   --------->GLK1(2)                       <---------HSFB2a(2)  --------->RAP2.3(1)        <----------DOF2 ------>ZmHOX2a(1)           --------->AHL20(2) ------>ARR14(2)      <---------ALFIN1   <---------ARR14(2)  <---------ARR11(3)  <---------HSFC1(1) -------ARR14(2)      --------->AtMYB61  --------->ARR14(2)  --------->ARR11(3)  --------->HSFC1(1) ------CCA1(2)     <---------ALFIN1     <---------GLK1(2)---------->DOF2 <---------AHL20(2) --------->WRI1    --------->ANAC46   --------->LBD16 <---------AHL20(2) <---------AHL20(1)   tatcgccgtcaatcacaatctccaccacttccttttactccagaatccttctctatttaaaaaggtctctgctattttattttctagaatcattagaaac  18278000                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                             <-------                                                                          ---------->DOF2    <-------                                                                         ====================HOX2a_HOX2a                                              <------MYB83               <------ZmHOX2a(1)   --------                                              <------MYB46(1)        --------->ALFIN1        <-------                                              ----------->GT1       <------NtERF2            <-------                                      <---------AHL20(2)          <---------ANAC46           <-------                                <---------WOX13(1)   <---------ICU4<---------DEAR4(2)     <---------ARR14(2)                         --------->ATHB12    <---------TOE2(3)    --------->ALFIN1        --------->ARR14(2)                 --------->ATHB12    --------->AHL20(2)           <---------DEAR3(1)  ------>ZmHOX2a(2)  <-----------HVH21    <---------WOX13(1)    --------->MYB59     <---------ABI4(1)  --------->ARR11(3)   agagtgtcactgtctcgagtcattgaatgatttgagtgatttaatattaggttaaaaatttcgcagaggcggtgaggaaagaagatgatccagttccgta  18278100                         <---------ANAC58                       --------->GLK1(2) -------ANAC46        <---------ARR11(3) ------AtMYB61        <---------GLK1(2) ---->SPL7          <---------ATHB12 ----MYB52(1)     ---------->DOF2 ---SPL7<---------ZAT6--------->ARR11(3) --ANAC58       --------->ANAC58                                                 ----------->GT1 --ANAC58       --------->ANAC58                                              <---------YAB1       <- ->ANAC55(2)  <----------ID1        <----------DOF2           <---------AHL20(2) <---------ANAC46  <- --ANAC55(1)--------->ANAC58  ----------->HVH21               <---------YAB1--------->YAB1        <-- --ANAC46 ---------->DOF2<---------ANAC58<---------ZAT6<---------At4g35610  <---------ICU4   <------- --ANAC55(2)--------->ANAC58<---------At4g35610  --------->At4g35610       --------->ICU4  --------->GLK1(2)   tggtggattagtgaaagcaccaaagattcttgctgacactttagagtcaatagctgcaactgtttttattgatgtgaattatgatgtgaaaagactctgg  18278200  Previous    Next  AGI:  At5g45150.1    Description:  RTL3 (RNASE THREE-LIKE PROTEIN 3); double-stranded RNA binding / ribonuclease III. similar to RTL2 (RNASE THREE-LIKE PROTEIN 2), double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G20420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38913.1); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Ribonuclease III; (InterPro:IPR000999); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) Range:  from: 18277668    to: 18281573    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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