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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                             <---------AHL20(2)
                                           <---------AHL20(2)
                                           <---------YAB1
                   --------->AHL20(2)    <---------CCA1(1)--------->ARR11(3)
                   --------->YAB1  --------->YAB1    <------ZmHOX2a(2)                   -----------
                   <---------AHL20(2)   --------->ARR11(3)--------->GLK1(2)          ---------->DOF2
         --------->MYB46(3)       <-------TEIL<---------YAB1               <---------ATHB12     <---
     <---------ATHB12   <-----------GT1 <---------ARR11(3)<---------ARR11(3)--------->YAB1    ------
 
agaaacaaatcaacaatctcatttatattacaaaacattcatagatattattttggatcaaaatctatacattatcaaatcaaaattcaaaagagaaata  17934100
                                                                               <---------ANAC58
                                                                               <---------ANAC58
       <---------ANAC55(2)                                                 <---------MYB52(2)
       ----------->GT1                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
 --------->ICU4                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <----------ID1        --------->ANAC58
--------->ANAC58                                <-----------GT1           ----------->GT1
--------->ANAC58                                --------->MYB52(1)        --------->ANAC58
>GT1   --------->ANAC55(2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
------ANAC55(2)                          --------->MYB52(1)           --------->ANAC58
--->ICU4       ----------->GT1         <---------MYB52(2)             --------->ANAC58        ------
 
agtaagcattaagtaacattgtaacaacaaatcacaaatacaaataacgaataacgggacaaatatcaaaacgaagcaagtaacttggcaaatatcaaca  17934200
                                                 ------>MYB83
                                               ------->GAMYB
                                              --------->MYB46(3)
                                              --------->DEAR3(2)            --------->ZAT18
                                            <-----------GT1               <---------------AtSPL3   <
                                            --------->MYB52(1)            --------------->AtSPL8  --
               <---------ANAC55(2)     --------->AHL20(2)                 <---------------AtSPL8 <--
        <---------ANAC55(2)            <---------AHL20(2)             --------->HSFB2a(2)        ---
        --------->ANAC55(2)           <---------AHL20(1)              <---------HSFB2a(2) <---------HSFB2a(2)
      --------->ICU4<---------ANAC58  <---------AHL20(2)      <---------DAG2<---------ZAT18      ---
 ----------->GT1    <---------ANAC58  --------->AHL20(2)      <----------DOF2             --------->HSFB2a(2)
--->MYB46(3)   --------->ANAC55(2) --------->YAB1------>MYB46(1)   --------->ZAT6      <-----------GT1
 
aatattgtaatacttgatacttgacttgggcttagaaataataaaattaaccgacttgttatccgctttatctctagagggtacttaaattttcgagaca  17934300
                                              <---------ALFIN1
                                              <---------CCA1(2)
                                    <---------ANAC58
                                    <---------ANAC58                                   --------->ANAC46
-------TEIL <---------ANAC46    <---------ANAC58 <---------MYB59 ----------->GT1       --------->DEAR3(1)
------->CCA1(2)                 --------->ANAC55(2)            <------------CBF       <---------LBD16
-------ARR14(2)                 <---------ANAC55(2)  <---------YAB1      <-----------GT1------>NtERF2
------>ARR14(2)                 <---------ANAC58 --------->TOE2(3)     <---------AHL20(2)     <-----
------>ARR11(1)    <---------WOX13(1)    <---------ZAT18    --------->YAB1           <---------ATERF1(1)
 
gatacgagtctagtaacgagtaattgccgaacaatgcgtacttgtgcccataccttattttagtcatattgtatattatctatttagtctccgcctcgtt  17934400
                            ---------->DOF2
                            <---------ZAT14
                            --------->ZAT14
                         ----------->GT1
                    --------->YAB1
                    -------->HAHB4
                   <---------YAB1
                 --------->YAB1
                <---------AHL20(2)           <---------GLK1(2)
               --------->AHL20(2)        --------->O2
      <----------DOF2    <---------ZAT6  <---------O2                         ------>NtERF2
----MYB52(1)--------->AHL20(2)       ------>NtERF2  *TSS   ------>NtERF2    --------->MYB46(3)
 
attccaagtctttgattatataataatagagtaaagtctctgcctcgtgattctcaagtctccgactatatcaaacagagccaccaagaacaaactaaga  17934500
                             >>>>>>>>>TBF1
                    --------->YAB1
               <------ZmHOX2a(2)
              --------->ARR11(3)              --------->GLK1(2)
              <---------ARR11(3)         --------->ANAC58                                      <----
 ----------->GT1    --------->MYB52(1)   --------->ANAC58   --------->ZAT6     <---------REM1(2)  --
 
agaagagtaacaatggagatcaataacgagaagaagaaactctcaagacaatcttcttccttcagactacgaagtccaagtctaaacgctcttcgtctcc  17934600
                                          ------->GAMYB
        ---------->ID1                   --------->MYB46(3)
       <---------WRKY18(1)               <------------AtMYB77
      --------->WRKY38(1)              --------->MYB52(1)
      ----------->HVH21            <-------TEIL             --------->ANAC58              <---------GLK1(1)
      --------->WRKY12    <---------TOE2(3)               ---------->DOF2                 --------->GLK1(1)
-----ALFIN1              --------->MYB52(1)<-----------HVH21--------->ANAC58         <---------At4g35610
------->DEAR3(1)      --------->YAB1--------->YAB1       --------->WRKY18(1)    <---------HSFB2a(2)<
 
accgagtctttgacctattcgacaaaaataacgatggattcataaccgtcgaagaactaagtcaagcactctcaagactcggtctcgacgctgatttctc  17934700
                                                                                --------->TOE1(2)
                                                                                --------->TOE2(3)
                                                                          --------->ANAC46
                                                                       --------->ZAT14
                                                                     --------->ANAC46
                                                                     --------->ANAC58           <---
                                                                     --------->ANAC58     --------->HSFB2a(1)
                                                                   <---------ALFIN1      <---------ARR11(1)
                                                                  --------->ZAT14        <----------
       <---------WRKY38(1)                                        --------->ZAT18        --------->GLK1(2)
      >>>>>>>>>>WRKY63                                            <---------ZAT14        <---------ARR14(2)
    --------->ANAC58                                              <---------ZAT18        --------->ARR14(2)
    --------->ANAC58                        --------->SPL7     <---------At4g35610       ------->TEIL
------>ZmHOX2a(2)               --------->LBD16<---------LBD16 --------->At4g35610   <--------------
------ZmHOX2a(2)       --------->YAB1     --------->LBD16   <----------DOF2     --------->TOE1(3)
 
cgatctcaagtcaacagttgattctttcatcaaaccggacaaaaccggactccggttcgatgactttgctgcactccacaaaaccttagacgaatctttc  17934800
                                         ------>ZmHOX2a(2)
                                        <------ZmHOX2a(2)
                                       --------->ARR14(3)
                                       --------->ARR11(3)
                                       <---------ARR14(3)
                                       --------->ARR14(2)
                                       <---------ARR11(3)
                                       <---------ARR14(2)
                                       --------->AGP1
                                       <---------AGP1
                               --------->LBD16
                              --------->ANAC46
                              <---------HSFB2a(2)
   <------ZmHOX2a(1)          --------->HSFB2a(2)                                           --------
-------DOF2                  <---------LBD16                                                <-------
-ARR10                    <---------GLK1(1)         <----------DOF2                       <---------LBD16
-------WRI1        ----------->HVH21  <---------CCA1(2)                         ----------->GT1
 
tttggaggagaaggaagttgctgtgatgggtctccggaatcagatcttgaagaagcttttaatgtgttcgatgaagacggagatggttttatctccgctg  17934900
                                                                                                   <
                                                                                              <-----
                                                                                             <------
                                                                                           <--------
                                      <-----------RAV1(2)                                 <---------YAB1
                                  ---------->DOF2                                       <---------ICU4
                                 ----------->HVH21                                      --------->YAB1
        --------->DAG2         ----------->RAV1(2)                  <---------WOX13(1) <---------ATHB12
      ---------->DOF2          <---------ANAC55(2)                --------->ATHB12     --------->ICU4
->At4g35610          <---------HSFC1(2)                 --------->ALFIN1    <-------GAMYB --------->ICU4
--At4g35610          --------->HSFC1(2)  <------ZmHOX2a(1)       <---------YAB1   --------->YAB1  <-
 
tggaattgcaaaaggttttgaagaagcttggattacctgaagcaggagagattgaacaagtggagaagatgattgtctctgttgatagtaatcatgatgg  17935000
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AGI:  At5g44460.1   
Description:  calcium-binding protein, putative. similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G20780.1); similar to putative calmodulin-like protein [Populus x canadensis] (GB:CAG27612.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:  from: 17934453    to: 17935210    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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