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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<---------
CCA1(1)
--------->
ARR11(3)
--------->
YAB1
--------->
YAB1
<------
ZmHOX2a(2)
-----------
<---------
AHL20(2)
--------->
ARR11(3)
--------->
GLK1(2)
---------->
DOF2
--------->
MYB46(3)
<-------
TEIL
<---------
YAB1
<---------
ATHB12
<---
<---------
ATHB12
<-----------
GT1
<---------
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
------
agaaacaaatcaacaatctcatttatattacaaaacattcatagatattattttggatcaaaatctatacattatcaaatcaaaattcaaaagagaaata
17934100
<---------
ANAC58
<---------
ANAC58
<---------
ANAC55(2)
<---------
MYB52(2)
----------->
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
--------->
ICU4
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<----------
ID1
--------->
ANAC58
--------->
ANAC58
<-----------
GT1
----------->
GT1
--------->
ANAC58
--------->
MYB52(1)
--------->
ANAC58
>
GT1
--------->
ANAC55(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------
ANAC55(2)
--------->
MYB52(1)
--------->
ANAC58
--->
ICU4
----------->
GT1
<---------
MYB52(2)
--------->
ANAC58
------
agtaagcattaagtaacattgtaacaacaaatcacaaatacaaataacgaataacgggacaaatatcaaaacgaagcaagtaacttggcaaatatcaaca
17934200
------>
MYB83
------->
GAMYB
--------->
MYB46(3)
--------->
DEAR3(2)
--------->
ZAT18
<-----------
GT1
<---------------
AtSPL3
<
--------->
MYB52(1)
--------------->
AtSPL8
--
<---------
ANAC55(2)
--------->
AHL20(2)
<---------------
AtSPL8
<--
<---------
ANAC55(2)
<---------
AHL20(2)
--------->
HSFB2a(2)
---
--------->
ANAC55(2)
<---------
AHL20(1)
<---------
HSFB2a(2)
<---------
HSFB2a(2)
--------->
ICU4
<---------
ANAC58
<---------
AHL20(2)
<---------
DAG2
<---------
ZAT18
---
----------->
GT1
<---------
ANAC58
--------->
AHL20(2)
<----------
DOF2
--------->
HSFB2a(2)
--->
MYB46(3)
--------->
ANAC55(2)
--------->
YAB1
------>
MYB46(1)
--------->
ZAT6
<-----------
GT1
aatattgtaatacttgatacttgacttgggcttagaaataataaaattaaccgacttgttatccgctttatctctagagggtacttaaattttcgagaca
17934300
<---------
ALFIN1
<---------
CCA1(2)
<---------
ANAC58
<---------
ANAC58
--------->
ANAC46
-------
TEIL
<---------
ANAC46
<---------
ANAC58
<---------
MYB59
----------->
GT1
--------->
DEAR3(1)
------->
CCA1(2)
--------->
ANAC55(2)
<------------
CBF
<---------
LBD16
-------
ARR14(2)
<---------
ANAC55(2)
<---------
YAB1
<-----------
GT1
------>
NtERF2
------>
ARR14(2)
<---------
ANAC58
--------->
TOE2(3)
<---------
AHL20(2)
<-----
------>
ARR11(1)
<---------
WOX13(1)
<---------
ZAT18
--------->
YAB1
<---------
ATERF1(1)
gatacgagtctagtaacgagtaattgccgaacaatgcgtacttgtgcccataccttattttagtcatattgtatattatctatttagtctccgcctcgtt
17934400
---------->
DOF2
<---------
ZAT14
--------->
ZAT14
----------->
GT1
--------->
YAB1
-------->
HAHB4
<---------
YAB1
--------->
YAB1
<---------
AHL20(2)
<---------
GLK1(2)
--------->
AHL20(2)
--------->
O2
<----------
DOF2
<---------
ZAT6
<---------
O2
------>
NtERF2
----
MYB52(1)
--------->
AHL20(2)
------>
NtERF2
*
TSS
------>
NtERF2
--------->
MYB46(3)
attccaagtctttgattatataataatagagtaaagtctctgcctcgtgatt
ctcaagtctccgactatatcaaacagagccaccaagaacaaactaaga
17934500
>>>>>>>>>
TBF1
--------->
YAB1
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
GLK1(2)
<---------
ARR11(3)
--------->
ANAC58
<----
----------->
GT1
--------->
MYB52(1)
--------->
ANAC58
--------->
ZAT6
<---------
REM1(2)
--
agaagagtaaca
atggagatcaataacgagaagaagaaactctcaagacaatcttcttccttcagactacgaagtccaagtctaaacgctcttcgtctcc
17934600
------->
GAMYB
---------->
ID1
--------->
MYB46(3)
<---------
WRKY18(1)
<------------
AtMYB77
--------->
WRKY38(1)
--------->
MYB52(1)
----------->
HVH21
<-------
TEIL
--------->
ANAC58
<---------
GLK1(1)
--------->
WRKY12
<---------
TOE2(3)
---------->
DOF2
--------->
GLK1(1)
-----
ALFIN1
--------->
MYB52(1)
<-----------
HVH21
--------->
ANAC58
<---------
At4g35610
------->
DEAR3(1)
--------->
YAB1
--------->
YAB1
--------->
WRKY18(1)
<---------
HSFB2a(2)
<
accgagtctttgacctattcgacaaaaataacgatggattcataaccgtcgaagaactaagtcaagcactctcaagactcggtctcgacgctgatttctc
17934700
--------->
TOE1(2)
--------->
TOE2(3)
--------->
ANAC46
--------->
ZAT14
--------->
ANAC46
--------->
ANAC58
<---
--------->
ANAC58
--------->
HSFB2a(1)
<---------
ALFIN1
<---------
ARR11(1)
--------->
ZAT14
<----------
<---------
WRKY38(1)
--------->
ZAT18
--------->
GLK1(2)
>>>>>>>>>>
WRKY63
<---------
ZAT14
<---------
ARR14(2)
--------->
ANAC58
<---------
ZAT18
--------->
ARR14(2)
--------->
ANAC58
--------->
SPL7
<---------
At4g35610
------->
TEIL
------>
ZmHOX2a(2)
--------->
LBD16
<---------
LBD16
--------->
At4g35610
<--------------
------
ZmHOX2a(2)
--------->
YAB1
--------->
LBD16
<----------
DOF2
--------->
TOE1(3)
cgatctcaagtcaacagttgattctttcatcaaaccggacaaaaccggactccggttcgatgactttgctgcactccacaaaaccttagacgaatctttc
17934800
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(3)
--------->
ARR11(3)
<---------
ARR14(3)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
AGP1
<---------
AGP1
--------->
LBD16
--------->
ANAC46
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
--------->
HSFB2a(2)
--------
-------
DOF2
<---------
LBD16
<-------
-
ARR10
<---------
GLK1(1)
<----------
DOF2
<---------
LBD16
-------
WRI1
----------->
HVH21
<---------
CCA1(2)
----------->
GT1
tttggaggagaaggaagttgctgtgatgggtctccggaatcagatcttgaagaagcttttaatgtgttcgatgaagacggagatggttttatctccgctg
17934900
<
<-----
<------
<--------
<-----------
RAV1(2)
<---------
YAB1
---------->
DOF2
<---------
ICU4
----------->
HVH21
--------->
YAB1
--------->
DAG2
----------->
RAV1(2)
<---------
WOX13(1)
<---------
ATHB12
---------->
DOF2
<---------
ANAC55(2)
--------->
ATHB12
--------->
ICU4
->
At4g35610
<---------
HSFC1(2)
--------->
ALFIN1
<-------
GAMYB
--------->
ICU4
--
At4g35610
--------->
HSFC1(2)
<------
ZmHOX2a(1)
<---------
YAB1
--------->
YAB1
<-
tggaattgcaaaaggttttgaagaagcttggattacctgaagcaggagagattgaacaagtggagaagatgattgtctctgttgatagtaatcatgatgg
17935000
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AGI:
At5g44460.1
Description:
calcium-binding protein, putative. similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G20780.1); similar to putative calmodulin-like protein [Populus x canadensis] (GB:CAG27612.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:
from: 17934453
to: 17935210
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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