AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                        <---------DAG2
                                                        <----------DOF2
                                                   <---------MYB52(2)
                                                   --------->MYB46(3)
                                              ----------->GT1
                                          --------->ARR11(3)
                                          --------->ARR14(2)
                                          <---------ARR14(2)
                                         <---------CCA1(2)                                    ------
                  --------->ZAT6      <-------TEIL <------------MYB.PH3(2)              ----------->GT1
------AHL20(2)  <-----------GT1 ---------->DOF2  <-----------GT1                 <---------AtLEC2
 
tttttttttttttttggattaactctaattcaaactaaagatgcatatattgtaacaaacttttttttggtcttcttcaacaatgcatggacagaaaata  17831200
                    --------->YAB1                 ---------->DOF2
                 <-----------GT1      --------->AHL20(2)                                ---------->DOF2
        --------->AHL20(2)            <---------AHL20(2)                            --------->ANAC58
    --------->AHL20(2)     <----------DOF2      --------->YAB1                      --------->ANAC58
   <---------ATHB12--------->ZAT6   --------->CCA1(2)                     <-----------GT1         <-
--->AHL20(2)   --------->AHL20(2)  <---------ARR11(3)                 <----------DOF2 ------->GAMYB
 
aaaacaatgaattaaaaatttaacaataagctttacaagatttaaaaacaattttaaagcatttcatacttgacttttaactggcacaacccaaagtctc  17831300
                                                                                                   -
                                                                                      ==============
                                                                                      <----------DOF2
                                                                                      --------->TOE2(3)
                                                 ----------->GT1        <---------ANAC58         <--
                                           ---------->CDC5       ------->TEIL         <-------------
                                           <-----------RAV1(2)<---------YAB1          --------------
                                    <---------ALFIN1---------->DOF2     <---------ANAC58         ---
                       --------->ALFIN1--------->DEAR3(1)  --------->ICU4        <---------DAG2 <---
                      <-------MYC3 ------>ZmHOX2a(2)--------->ZAT14    --------->ZAT2<--------------
-----------CBF        ------->MYC3 --------->MYB46(3)     <----------DOF2     <---------ALFIN1 -----
 
aaattgacttctagtgtcttcaacatgtgtgtgtgtgatccaccgctcagggtagtaaagtctttatgaaacttagcttgcccaccttactttaatgggc  17831400
     <-----------------AG
     <-----------------AGL1
----->NtERF2
=======================MADS_MADS
----NtERF2
--AGL15
->AGL15                ----------->GT1                           <---------YAB1                -----
------>LBD16--------->DAG2                       --------->ANAC55(2)                         <------ZmHOX2a(1)
------ATERF1(1)       <---------TOE2(3)          --------->YAB1 --------->ARR11(3)    <------ZmHOX2a(1)
---AGL2   ---------->DOF2          ----------->HVH21       ------------>CBF  <-------TEIL  <--------
---->ATERF1(1)        <---------TOE1(3)         ---------->ID1  <---------ARR11(3)  <---------TOE2(3)
 
cgggccttaaccaaaaaggctagtgaaggttacatccagtgacaaacatttttcgtaattaagtcaatatcatacataggtgcattttaggatttaggat  17831500
                                                                                                   -
                                                                                                ----
                                      <---------At4g35610                                     <-----
                                      --------->At4g35610                                     ------
                                   --------->ATERF1(1) <------NtERF2                         <------
                                   <------NtERF2      ------>NtERF2                          <------
                                 <---------ANAC46     --------->LBD16                       <-------
                              --------->ANAC58       --------->ATERF1(2)                   <--------
                              --------->ANAC58 --------->ARR14(2)                          <------NtERF2
                        <---------ANAC58   <---------HSFB2a(2)    <---------MYB46(3)      ------>NtERF2
                        <---------ANAC58   --------->LBD16        ------>NtERF2           <---------RAP2.3(1)
                        <---------ANAC46  <---------ANAC46    <---------DREB2C(2)         <---------RRTF1(1)
                       <-----------------------TaNAC69(2)  ----------->TGA1               <---------ERF1
                   ---------->DOF2------>NtERF2---------->TaMYB80<---------DEAR3(1)      <---------DEAR3(1)
                  --------->AHL20(2)  --------->ZAT2 <---------DEAR3(1)--------->KAN4(2) <---------RAP2.3(2)
            ----------->GT1   <---------DEAR3(1)     <---------ATERF1(2)                 <---------RAP2.3(3)
       <---------ARR14(2)     --------->ANAC46 <---------ARR14(2)--------->ALFIN1     --------->ETT(2)
       --------->ARR14(2)    --------->SPL7--------->HSFB2a(2)<---------DEAR3(1)     --------->HSFB2a(2)
    --------->YAB1<---------AHL20(2)  <---------ZAT2<---------LBD16<------NtERF2     <---------HSFB2a(2)
------>GT1 ----------->GT1------>NtERF2   <---------LBD16  ----------->HVH21      <---------ARR14(2)
-TOE2(3)--------->MYB52(1)<------NtERF2  <---------LBD16<---------DEAR3(1)        --------->ARR14(2)
 
gtgaaaatcagaaacgggtaattaaaggcgggcacggcgcgagctccgggaatttgccggcgatgacggtggctcattctcaccggttctcgacggcggt  17831600
                                                                <---------MYB52(1)
                                                               --------->LBD16
                                                              --------------->AtSPL8
         --------->TOE2(3)                         --------->ANAC55(2)
        --------->ZAT6                             --------->ANAC58<---------HSFC1(2)
       <---------TOE2(3)                           <---------ANAC55(2)
-------->ANAC46                                    --------->ANAC46<---------HSFB2a(1)
------>DOF2                                        --------->ANAC58--------->HSFB2a(1)
-NtERF2<---------YAB1                              ----------->GT1 --------->HSFC1(2)
--->At5g28300      <----------DOF2                 --------->ANAC55(1)                    ----------
---DEAR3(2)       <---------ANAC58    --------->ZAT2  <-----------GT1          <------ZmHOX2a(2)
---MYB46(3)   <---------ANAC58        <---------At4g35610     --------------->AtSPL3   --------->YAB1
--DEAR3(1)    <---------ANAC58        <---------ZAT2<---------MYB52(2)       --------->GLK1(1)------
-------------WRI1 <---------ANAC58    --------->At4g35610    <---------LBD16 <---------GLK1(1)<-----
 
aaaccccattaacattagcttgctttcaaaacaattacttcagcttggaagaacaagtaacaattccggtaccttctcagagatcagtaatcaaaaagaa  17831700
                                                      --------->AtLEC2
                                                      --------->ANAC58
                                                      --------->ANAC58
                                                     --------->WOX13(1)
                               <---------WOX13(1)  <---------ATHB12
                             <---------ICU4    --------->YAB1                       --------->ARR11(3)
                   ---------->DOF2       --------->TOE2(3)                          <---------ARR11(3)
        --------->ZAT14      --------->ATHB12 <---------ATHB12                  ---------->DOF2
>DOF2   <---------ZAT14     <---------YAB1  --------->WOX13(1)                --------->LBD16     --
--->ARR11(3)   <---------At4g35610       --------->YAB1                      --------->ANAC46-------
----ARR11(3)   --------->At4g35610    --------->WOX13(1)     <-------TEIL   <---------LBD16<------ZmHOX2a(2)
 
cttctagtgtcttcactcatctcaaagctcgatgattgcatcaatctcaatcaaatcaagcaaattcatggccatgttctccgtaaaggtctcgatcaaa  17831800
                                       <---------DEAR3(1)
                                    --------->ZAT2          --------->ANAC58
                                    <---------ZAT2          --------->ANAC58                  <-----
                                   ------->TEIL            --------->SPL7                     ------
                          --------->ANAC58             <-------TEIL   --------->REM1(2)     --------
                         <---------TOE1(2)             ------>ZmHOX2a(2)                   <--------
                         <---------TOE2(2)            <------ZmHOX2a(2)                    ---------
           --------->ANAC58    <---------TOE2(3)     --------->ARR14(2)                    ---------
           --------->ANAC58   <---------DOF5.7(2)    <---------ARR14(2)                    ---------
--------->GT1 ------->TEIL--------->ANAC58           ------->TEIL   --------->LBD16        <--------
--->DOF2   --------->ANAC46 --------->DOF5.7(2)   <---------ATHB12 <---------ANAC46       <---------LBD16
 
gctgttacattctcacgaagctaattcgcacgttaacgaagctcggtgttccaatggatccatacgctcgccgtgtaatcgagcctgttcaattccggaa  17831900
                        <---------TOE1(2)
----ARR14(2)          <---------LBD16
--->ARR14(2)         <---------ANAC46
->LBD16              <---------ANAC58                                                         ------
-ANAC55(2)     --------->At5g28300                                                            ------
>HSFB2a(2)  --------->ZAT18                                                      ---------->DOF2----
>ANAC46  ------->TEIL<---------ANAC58                ------->TEIL               <------ZmHOX2a(1)
>ANAC55(2)  <---------ZAT14            ----------->GT1        --------------->AGL15        <--------
-HSFB2a(2)  --------->ZAT14<---------GLK1(1)      <---------REM1(1)    ------->TEIL        ---------
 
cccgtttctatggaccgcagtgattcgtgggtatgcgatagaaggtaaatttgatgaagctattgctatgtatggatgtatgaggaaagaagagattacg  17832000
    <----------DOF2           <---------ANAC58
   <------------------------ANAC81--------->HSFB2a(2)
--->ANAC58           <----------DOF2                            <---------MYB52(1)
--->ANAC58         <----------DOF2<---------HSFB2a(2)         --------->ETT(2)--------->DEAR3(1)
------->RAV1(2)  <---------At4g35610             --------->CCA1(2)       --------->AtLEC2
-ARR14(2) <----------DOF2     <---------ANAC58  <---------ARR11(3)    <-------TEIL
>ARR14(2) <---------DAG2  ---------->DOF2       --------->ARR11(1)--------->MYB52(2)
 
cctgtttctttcactttctctgctcttttgaaagcttgtggaacaatgaaagatttgaatttgggtcgtcagtttcatgcacagacgtttagacttagag  17832100
<- Previous    Next ->

AGI:  At5g44230.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48311.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 17831563    to: 17833536    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version