Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->AHL20(2)               --------->YAB1              <---------ATHB12         --------->GLK1(2)    <---------ZAT2    --------->At4g35610              <-------TEIL    <---------At4g35610          <---------YAB1           ------>ZmHOX2a(2)    --------->ZAT2           <-----------GT1            --------->ARR11(3)                --------->ARR14(2) ------DAG2 --------->WOX13(1) --------->YAB1           <---------ARR11(3)                <---------ARR14(2)   cttctcagcagaatcaatcaaattcgagtattaacatgatacatatagtcgaaaaatcgatcttacttactcaaactctatacatatagtcgaattcgac  17772600                                             <---------ANAC55(2)                                     --------->ANAC58                                     --------->ANAC55(1)                --------->ZAT6       --------->ANAC46                                         <------         --------->GLK1(1)           --------->ANAC58                                       <--------   <-----------GT1            <---------GLK1(2)                                             --------- --------->AHL20(2)   --------->AtMYB61      --------->ANAC55(2)                            <--------   gaattaaaccgaattccaacactaccaaaacagaatcacacgaaatcacataatacattctatattcgtcaaggtcccaaatcgatctacttcagattca  17772700                                                                ------->GAMYB                                                               --------->MYB46(3)                                                               <---------ATHB12                                                              ------>MYB46(1)                                                             --------->MYB55(1)                                                            <---------MYB111(1)                                                            --------->MYB46(3)                                                            --------->AtMYB61                                                            <---------MYB46(2)                                                            <---------MYB111(2)             <------ZmHOX2a(2)                                                            --------->DEAR3(1)             --------->ARR14(2)                                                            <---------MYB55(2)             <---------ARR11(3)                                                           <------NtERF2                   --------->ARR11(3)                                                   --------->ATHB12                        <---------ARR14(2)                           --------->ATHB12       <-------TEIL------>MYB83         <---------LBD16                           -------->HAHB4        <------ZmHOX2a(2)             --------->CCA1(2)                          --------->ICU4        <---------ARR14(2)             <------ZmHOX2a(2)                          <---------ATHB12      <---------ARR11(3)            <---------ARR14(2)                          <---------YAB1        --------->AGP1-------->P      --------->AGP1========= -TEIL         --------->ANAC46                 --------->ARR14(2)            --------->ARR14(2) -ARR14(2)   --------->ANAC58             <-----------GT1  --------->DEAR3(2) --------->ARR11(3) >ARR14(2)   --------->ANAC46          <---------ICU4      --------->MYB46(3) <---------ARR11(3)    - -GLK1(2)    --------->ANAC58         --------->ICU4      ------>NtERF2      --------->GLK1(1)      <   cagaaacagaaacacacacaaaatcgaaatgattcgaataatttttaccagatccattggcaccaaccaagaggcaacgagatccagcgggaagatcgag  17772800                                                                         <---------ZAT18                                                                     <---------ALFIN1                                                                    <---------ETT(2)                                                                  <-----------HVH21                                                                  --------->ORA47(1)                    ------>ZmHOX2a(2)                            --------->DEAR3(1)                   <------ZmHOX2a(2)                            --------->DEAR3(2)                  <---------ARR11(3)                         --------->ZAT18  --------->ANAC58                  --------->ARR11(3)                     <---------ICU4  --------->ZAT14                  <---------ARR14(3)                  --------->TOE2(3) --------->DEAR3(1) ------>NtERF2                  --------->ARR14(2)                  --------->TOE1(3)--------->ANAC46    --------->LBD16                 <------ZmHOX2a(1)                   --------->ZAT6 --------->SPL7        --------->ANAC46 =======================HOX2a_HOX2a                 -------->P<-----------GT1 --------->ANAC58     <- -------->AHL20(2)--------->ARR14(3)              --------->AtMYB61 --------->ETT(2) <-----------GT1 ---------AHL20(2)<---------ARR14(2)             <---------MYB52(2) --------->MYB46(3)   <---------LBD16   attaaaatcgaagaaaataggatcttgaacatcgtaagaaaactgcattccactaaccctaattgcaccgtccaccgcgctcgcatttttctccgccatt  17772900                                                                                           <---------ANAC46                                                                        <---------MYB52(1) <---------ANAC58                                                                      <-----------RAV1(1)  <---------ANAC58            <-----------HVH21                        <-----------GT1 *TSS       --------->AHL20(2)       ---------->DOF2                          ----------->GT1 <----------DOF2 ----------->TBP     <------ZmHOX2a(2)                        ---------->DOF2 --------->At4g35610    <-------TEIL ----------GT1                             ----------->GT1 ------>ZmHOX2a(1)  <----------DOF2   ttttccgatcaaagagtcagatagagagagggagagattagtaagtagtaaagtataactcctctgcttaatctgttggcctttaaatacgttccgtttt  17773000                                          <---------DAG2                                       <-----------GT1                                     <---------ANAC55(2)                                     --------->ANAC55(2)                                    --------------->AtSPL8                                  <---------MYB52(1)                                --------->O2                                --------->ANAC58                                --------->ANAC46                                --------->bZIP60(2)                                            <-----        --------->ICU4          --------->ANAC58                                               ------       <---------MYB59        <---------ALFIN1                                              ---------     --------->ARR11(3)     ------>NtERF2 <----------DOF2          <----------DOF2        <----------     <---------ARR11(3)   <---------RAP2.6(2)               <-----------GT1   --------->LBD16 ------- ---------->DOF2       <---------GLK1(1)------->TEIL <---------MYB52(1)       <---------At4g35610   aaacaaagaccttattagccattagatttcggccacgttatgtacttttctgtccattagatttacatactttagtcttccgctaatacgtttaaccagc  17773100                                                          --------->TGA2(2)          <-----------TGA1                               --------->TOE2(3)         <<<<<<<<<<HY5                                   <-----------TGA1         ===================================bZIP_DOF    <---------O2         --------->ANAC55(1)                            <---------TGA1a         <---------O2                                   --------->bZIP60(1)         --------->O2                                   --------->O2         --------->ANAC58                               <---------bZIP60(1)         --------->ANAC46                               --------->TGA2(1)         <---------ANAC55(2)                            <---------ANAC46         --------->ANAC58                               <---------ANAC55(2)               <---------AHL20(2)         --------->ANAC55(2)                            <---------TGA2(1)                 --------->AHL20(2)         --------->bZIP60(2)                            --------->ANAC55(2)           <---------AHL20(2)         <---------bZIP60(1)                            <---------ANAC58              --------->AHL20(2)         --------->TGA1a                                --------->TGA1a              <---------AHL20(2)         <---------TGA1a         ---------->DOF2        --------->ANAC58          --------->ATHB51         --------->bZIP60(1)     =================================bZIP_DOF        -------->ATHB1        <-----------STF1      --------->ORA47(1)        --------->ANAC58          --------->YAB1       <---------ALFIN1       ----------->RAV1(1)       <---------ANAC58          <---------AHL20(2)     ------>NtERF2           --------->DEAR3(1)      <---------MYB52(1)           <---------ICU4  <---------At4g35610        --------->DREB2C(2)    <-----------HVH21             <--------HAHB4  --------->At4g35610        --------->DEAR4(1)     <----------DOF2               -------->HAHB4  --------->ZAT2             <---------ETT(1)       ==============bZIP_DOF       <---------YAB1  <---------ZAT2             --------->At1g77200  <------NtERF2                  --------->ICU4------ ----At4g35610          <---------ANAC58         ------>NtERF2           <---------AHL20(2)   <------ --->At4g35610          <---------ANAC58 <---------AHL20(2)           --------->YAB1 --------->AHL20(2) >MYB46(3)<-----------HVH21 --------->DEAR3(2)  <---------DEAR3(1) --------->TOE2(3)<---------YAB1--- -GT1<-----------HVH21 <---------At4g35610    --------->MYB52(1) <---------YAB1  <---------ATHB12 <-- ---->RAV1(1)      <-----------RAV1(1)  --------->AHL20(2)<---------MYB52(1)     <---------ATHB51 ---   agatagctgccacgtcactctatgttgctcaccgacaaagaattaaaacgacggcgttacgtcagttttcattaataaatctaattattaatttaaataa  17773200                                             --------->AHL20(2)                                             <---------AHL20(2)                                         --------->AHL20(2)                                         <---------AHL20(2)                                   <------      --------->At5g28300             <---------AHL20(2)                                      -------     ----------->GT1                 <---------AHL20(2)                                 --------->ANAC46 --------->ARR11(3)               --------->AHL20(2)                          --------->AHL20(2) <---------AHL20(2)               <---------AHL20(2)                          <---------AHL20(2) <---------AHL20(1)              <---------AHL20(1)                  --------->AHL20(1) --------->ANAC58 --->YAB1                        --------->AHL20(2)                  --------->AHL20(2) --------->ANAC58 ---AHL20(2)                     <---------AHL20(2)                  <---------AHL20(1)------->TEIL ------>AHL20(2)        --------->PCF2--------->AHL20(2)             <---------AHL20(2)<---------LBD16 -------AHL20(2)        <---------TCP15(1)<---------AHL20(2)  ----------->GT1 --------->ICU4 -------- ------>YAB1 <---------YAB1----------->RAV1(1)<---------AHL20(2)<---------MYB52(1)    <---------AtLEC2   taatatatggtaaatatgtttacaaggtcccacaaattatttatttattaattagataaaaacactgttattttattgaaaaaattatgcacggattaaa  17773300                  --------->AHL20(2)              <---------YAB1  <---------CCA1(1)                                                                             <----  <---------RVE1(1)                                                                   --------->ARR11(3) --------->ARR11(3)          <---------TOE2(3)---------->DOF2     <---------AHL20(2)  <---------ARR11(3) <---------ARR11(3)---------->DOF2          >>>>>>>>>GATA-1     <---------AHL20(2)    --------->AHL20(1) ---AHL20(2) --------->AHL20(2)      <---------YAB1             --------->AHL20(2)    <---------AHL20(1) -->AHL20(2) <---------AHL20(2)    --------->YAB1        ----------->GT1     <---------ICU4   ------>NtERF2 ->AHL20(2) --------->AHL20(2)    <---------YAB1        <---------TOE2(3)    --------->YAB1  <-------   ttagatatttgaaattaaaattaaagcatttgatgtattataaatagataaagaaaatgaggtaatataaatttgttaagcatgacaatattttggcgac  17773400                                       --------->ICU4                                       <---------YAB1                                          ------      --------->TOE2(3)              --------->YAB1                                            ------      --------->YAB1            --------->AHL20(2)                    --------->AGP1         --------     <---------ZAT6           --------->AHL20(2)                   --------->YAB1            <-------     ----------->GT1   <---------AHL20(2)                 --------->YAB1                   ------->TEIL    <---------TOE2(3) --------->AHL20(2)                 <---------ATHB12          --------->YAB1 -----O2  <---------YAB1   --------->AHL20(2)         <---------AHL20(2)           --------->ATHB12 --RAP2.6(2)         <---------YAB1 <---------YAB1   --------->AHL20(2)           <---------YAB1   ttgtctaatgttaatattggattattatataaaataatatgatgattcaaatgtattaaatcataaaaatcagaactagtctctatgattaagaacctaa  17773500  Previous    Next  AGI:  At5g44110.1    Description:  POP1. Identical to Non-intrinsic ABC protein 2 (NAP2) [Arabidopsis Thaliana] (GB:Q9XF19;GB:Q8LBC2); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G03905.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40609.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593) Range:  from: 17771291    to: 17772969    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g44120.1    Description:  CRA1 (CRUCIFERINA); nutrient reservoir. Identical to 12S seed storage protein CRA1 precursor [Contains: 12S seed storage protein CRA1 alpha chain (CRA1) [Arabidopsis Thaliana] (GB:P15455;GB:Q3E711;GB:Q9FFH7); similar to CRU2 (CRUCIFERIN 2), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT1G03880.1); similar to cruciferin [Brassica napus] (GB:BAC80212.1); similar to Cruciferin BnC1 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin BnC1 subunit alpha; Cruciferin BnC1 subunit beta] (GB:P33523); similar to cruciferin precursor (GB:AAA32988.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains Range:  from: 17773491    to: 17775502    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version