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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                           ---------
                                                                                         <---------ANAC46
                                                                    <---------LBD16      --------->TGA1a
                                 ------>MYB46(1)                   <---------At5g28300   <---------O2
                       <---------ANAC46    --------->ZAT2    --------->ICU4              <---------TGA1a
                       <---------ANAC58    <---------ZAT2    <---------YAB1              <---------bZIP60(2)
                       <---------ANAC58    <---------At4g35610    <-----------GT1        <---------ANAC58
              --------------->AGL15  ---------->DOF2       <---------ICU4                <---------ANAC58
---------GLK1(2)       ----------->GT1     --------->At4g35610--------->ATHB12           --------->O2
--->MYB83     --------->TOE2(3)  ------>MYB83              --------->YAB1  --------->HSFC1(1)
--->MYB46(1)  <---------------AGL15<---------MYB52(2)     <---------ATHB12 <---------HSFB2a(2)
-----MYB59  <---------At5g28300<---------MYB59            <------ZmHOX2a(2)<---------HSFC1(1)
-->ARR11(3)<-----------GT1    --------->ANAC46      --------->MYB52(1)     --------->HSFB2a(2)
 
tagcttctctcaatttaccacaattagcgtaaaacccaactaaagcagcttgcacaaaccgatcatgattcaccggttcgagaaatttcaagacgtgggc  17610300
                                                                      --------->ATHB12
                                                                     <-------TEIL
                                                               --------->TOE2(3)
                                                              --------->ANAC58
                                                              --------->ANAC55(2)
                                                              <---------ANAC55(2)                 --
                                                              ----------->GT1                ------>ZmHOX2a(2)
                                                              --------->ANAC58             ---------
                                                              --------->ANAC55(1)          <--------
                                            <----------DOF2  <-------TEIL  <---------ANAC58<--------
                                    ----------->RAV1(2)     --------->CCA1(2)              ---------
   <---------ZAT18             <---------WRKY12            --------->ARR14(2)             <---------CCA1(2)
   --------->ZAT18           <-----------HVH21             <---------ARR14(2)  ----------->HVH21  <-
>ALFIN1            ------>NtERF2---------->DOF2           <------ZmHOX2a(1)<---------ANAC58<--------
 
atgaagagccctcccatggcgatgccattgagcgtcaaagcctgaggctttgaagagagaaggatacgtaaattcattgggtctgacaaaattggatctt  17610400
     --------->GLK1(2)
     --------->ARR14(2)
     <---------ARR11(3)
------->At4g35610                                                                            -------
>ARR14(2)                                            <---------WOX13(1)                      -------
-ARR14(2)                                          --------->ATHB12              <---------ANAC46
-AGP1<-----------ARR10--------->ARR14(2)          <---------YAB1                 <---------REM1(1)
>ARR11(3)             <---------ARR14(2)<---------ANAC58                       <---------ZAT14     <
--------At4g35610----------->GT1        <---------ANAC58                      --------->ALFIN1    --
-ARR11(3)   ------>ZmHOX2a(2)           <---------ANAC46              --------->CCA1(2) <------ZmHOX2a(1)
 
gagctcaaaatctgatcgtagagagaaaacgcgagatgggtttgagtggaattgtgattggagacgatggaagagatgagagtgttgtagaggaagacgg  17610500
                                          --------->MYB52(1)
                                       <---------At4g35610                     <---------GLK1(1)
              <---------SPL7      <------ZmHOX2a(1)                            --------->CCA1(2)
       --------->ARR14(2)       <---------TOE1(2)                              --------->GLK1(1)
       <---------ARR14(2)       <---------TOE2(2)   <------ZmHOX2a(1)         <---------ARR14(2)
    <---------TOE2(3)       --------->ZAT18 <---------DEAR3(1)   --------->At4g35610  <---------ANAC46
-->ANAC58    <---------ANAC58<---------ANAC46     <---------ANAC46            --------->ARR14(2)
-->ANAC58    <---------ANAC46<---------ANAC58   <---------MYB46(3)           <------ZmHOX2a(1)
------ZmHOX2a(1)    --------->CCA1(2)  --------->At4g35610       <---------At4g35610 --------->ALFIN1
------->ICU4 <---------ANAC58<---------ANAC58  --------->ALFIN1<------ZmHOX2a(1)   --------->ALFIN1
 
aaggattagggatttggcgtaagatagagagtgcgtaggataagcagacggtggaggataagtgaaggagcttacttagaggatatgtgtggtgagagag  17610600
                                                                                          <---------ANAC58
                                                                                          <---------ANAC58
                                            --------->GLK1(1)                       <---------ANAC46
                                           <---------ARR14(2)                       <---------ANAC58
                <---------AtLEC2           --------->ARR14(2)<------MYB46(1)        <---------ANAC58
        --------->ATHB12                  <------ZmHOX2a(1)  <------MYB83       <---------ANAC58
       --------->ICU4                    --------->ICU4     <---------TOE2(3)   <---------ANAC58   <
       <---------YAB1         <---------TOE1(3)             --------->MYB59   <---------YAB1    <---
    <---------YAB1            <---------TOE2(3)        <---------TOE2(3)   <---------YAB1 <---------AtLEC2
 
accgattgtgatgatttgggcatggatttgtttgaggttttgtaaggatttgcattttgagattaggtttaagcatcgatgattcttgcttgtgcttgga  17610700
                                                                                          ----------
                                            <------------CBF                      <---------YAB1
                                          <---------YAB1                         --------->TOE2(3)
                                    --------->ARR11(3)                          <---------ICU4     <
                                    <---------ARR14(2)     --------->AHL20(2)   --------->YAB1   <--
            <---------At4g35610     <---------GLK1(2)      <---------AHL20(2) <-----------GT1<------
-----------HVH21                  ----------->ARR10       --------->AHL20(2)--------->AHL20(2)   <--
------At4g35610                <---------ANAC46        ----------->GT1      <---------AHL20(2)   <--
 
gatgtcatatgtggaagctaataagtttctagttgctcagattttgtaattgagaagaagattaaatttgtttgcaaatttaaacattataggcccaatt  17610800
                                  <---------ATERF1(1)
-->CBF                           <---------RAP2.6(2)     --------->MYB55(2)  <-----------TBP
---------MYB52(1)                <---------DEAR3(1)      --------->MYB111(2) --------->AHL20(2)
-------ANAC46                   --------->RAP2.6(3)      <---------MYB46(3)  <---------AHL20(2)
------CBF                       --------->SPL7          <--------P         <-----------TBP
-------ANAC58                  <------ZmHOX2a(1)       <-------GAMYB <---------ANAC46      <--------
-------ANAC58       <---------GLK1(1)       ---------->ID1<-------GAMYB<---------ANAC46   --------->ATHB12
 
gcgttagtaatgagacctattagatttcacatgaggacggcccatttgtttttttttgggttgttgttgttgttgtgtatatatatatcaaatccattgg  17610900
              <<<<<<<<<WRKY18
             ------------>CBF
            --------->TOE2(3)
           --------->YAB1                               <----------DOF2               <---------TOE2(3)
        --------->YAB1                     ------>ZmHOX2a(1)                        ---------->DOF2
        <---------ICU4                  ------>ZmHOX2a(1)     --------->YAB1   <---------YAB1
     --------->YAB1 ------------>CBF<-----------GT1     <---------DAG2     <---------AHL20(2)
    <---------AHL20(2)      <---------ANAC58         --------->ARR11(3)  <---------YAB1
   --------->AHL20(2)       <---------ANAC46         <---------ARR11(3)<---------AHL20(2) <------ZmHOX2a(2)
----CBF -------->HAHB4      <---------ANAC58      --------->YAB1      <---------AHL20(2)<------ZmHOX2a(1)
 
aacatttttaataatcgtcaatgtgcaattttcttgtattttcctccttcaaataagaactttattcatattttttatttttatgaataaaggatcaaaa  17611000
                                                             <---------YAB1
                                                        <---------------AGL15
                                               <---------AHL20(2)
                                              <---------AHL20(1)
                       <---------AHL20(2)     <---------AHL20(2)
                    <---------AHL20(2)        --------->AHL20(2)
                   --------->AHL20(2)         <---------ARR11(3)             <---------ARR11(3)
                  <---------YAB1              --------->ARR11(3)     --------->TOE2(3)
                 --------->AHL20(2)     --------->CCA1(2)    <---------AHL20(2)
                 --------->AHL20(1)   <------ZmHOX2a(1) --------------->AGL15--------->ARR11(3)
                <---------ICU4       ----------->GT1 <-----------GT1----------->GT1
               --------->ICU4     ---------->DOF2<---------AHL20(2)<---------TOE2(3)
          ----------->GT1   ----------->GT1   --------->AHL20(1)   <---------TOE1(3)
========================================================================MADS_MADS
<---------------AGL15  --------->AHL20(2)--------->AHL20(2) <---------AHL20(2)          <---------AHL20(2)
 
ctactaatacaagagataaatattatataatttgttaaaaaggatataatatatttttgctatttttattaacgtaaaaagattttaaaatttaaacggt  17611100
                       <---------AHL20(2)
                       <---------AHL20(1)
       ------->TEIL    --------->AHL20(2)
      --------->MYB52(1)<---------AHL20(2)
  --------->YAB1   <---------YAB1                      <---------ZAT6      <---------HSFC1(2)
 <---------YAB1----------->GT1          --------->ATHB12        --------->AHL20(2)                <-
 
gtttataatgaacggagagagtataatttttttttgaagttagtgattagttgagtaagtgttagaaaaaaatgttgaagtttcgaactggtttcatttc  17611200
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AGI:  At5g43790.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G37380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71240.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 17609234    to: 17610708    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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