Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->MYB46(3)                  --------->TOE2(3)                         <---------RVE1(1)                       --------->SPL7                        <---------GLK1(2)                     <---------ANAC58       --------------->AtSPL3      <-----------GT1            <---------ANAC46  ---------->DOF2       --------->ARR14(2)                    <---------ANAC58                ------- <---------AHL20(2)     <---------ARR14(2)                   --------------->AtSPL8         --------- --------YAB1          <---------At4g35610                   <---------------AtSPL8     ---------->DOF2 ---->GT1 <---------ALFIN1  <----------DOF2                  --------------->AtSPL3<---------WRKY38(1)   tattaaaaggccatacctcttcttcagatactttgtttaaccactcgtcttgctgattccatttgcgtacaataaccttgtttagtcaacaaaagatagt  17539300   --------->AHL20(1)   --------->ARR11(3)   <---------ARR11(3)                           <---------GLK1(1) <---------AHL20(1)                             --------->GLK1(1) <---------ARR11(3)                            <---------ARR11(3) --------->ARR11(3)  <-----------GT1          <------ZmHOX2a(1) ---->GT1    <---------At5g28300         --------->MYB52(1)                                  <------ZmHOX2a(1) >ARR11(3)  --------->MYB52(1)         <---------MYB52(2)                                  <---------TOE2(3)   gaatatatattcacttacggtttatacagttccatggtgctactaacaggatatcacagagaccagagaccagaacattactaaatgacatttgaggaat  17539400                                                                                --------->At4g35610                                                      --------->TOE2(2)         <---------At4g35610                                                     ----------->RAV1(2)   <---------ANAC58     -----                                <----------DOF2  <---------MYB52(2)        <---------ANAC58  --------                         <----------DOF2         --------->MYB46(3)    --------->MYB46(3)    <-------   ---------->DOF2  ---------->DOF2        ----------->GT1             ---------->DOF2<------ZmHOX2a(1)   ttgataaaagttcaaattcgataaaagctttaaactttgaagaagtagttaacaaacctgagtatcgattccaacaagcgtatgctgaggaacatcgaga  17539500         <---------At4g35610                                                                   ------         --------->At4g35610                                                                   ------     <---------ANAC58                                                                      <---------HSFC1(1)     <---------ANAC58                                                                      <---------HSFB2a(2) ----->DOF2             --------->ANAC58            <---------ANAC58            --------->MYB46(3) ->HSFB2a(2)            --------->ANAC58    --------->GLK1(2)                 --------->MYB52(1) --HSFB2a(2)      <----------DOF2<---------ZAT18    <---------ANAC58---------->DOF2        --------->HSFB2a(2)   aagagaagcgtagctccatgctttacaagctctagtgccttcttagaatccatagcttccttcttcaaaatagagcggaacaacgactatattccagaag  17539600                                                                                                    <                                                                                         --------->DREB2C(2)                                                                                         --------->At1g77200                                  --------->DAG2                                         ------->GAMYB                    <---------AHL20(2)                                                   --------->DEAR4(1)                    <---------AHL20(1)                                                  --------->DEAR3(2)                    --------->AHL20(1)                        --------->LBD16        --------->MYB46(3)                    --------->ARR11(3) --------->ALFIN1      --------->ANAC46   <----------DOF2<-----   --------->AHL20(2)            ---------->DOF2   <---------ANAC55(2)          <---------DAG2------- --->ANAC58      <---------AHL20(2)  <---------ANAC58       ------->GAMYB  <----------DOF2----------- --->ANAC58      --------->AHL20(2)  <---------ANAC58----------->HVH21--------->ANAC46  --------->MYB46(3)   ccccattaaacaggcccattaaaatattgggcctataaagcgtggcccaaaacatgtgacaacgcgcgattcacgcggtttactttatcaaccgacataa  17539700              <---------AHL20(2)               <-------TEIL                                     -----            <-----------TBP------>MYB46(1)     *TSS                                             -----       --------->TOE2(3)   <---------ARR14(2)--------->ARR14(2)                                 -----     <---------TOE2(3)     ------>MYB83      <---------GLK1(2)                                ------- ---------ANAC55(2)        --------->ARR14(2)<---------ARR14(2)                              <------ZmHOX2a(2) ----ICU4   ========================================================================================= -->ICU4    <---------------AGL15 ------>ZmHOX2a(1)            <---------ATHB12             <-------- >RAV1(1) --------->AHL20(2)    ----------->RAV1(2)       <-----------GT1               --------->ANAC46   tcacataaacgtttatttatagagaaacctatcttcctgcctcttcagattcgttttatttttcaatcgtttcaatttctaaaattctcaacgcgatcac  17539800                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                              ------>ZmHOX2a(1)                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------   ----------------->AGL3                                                                   ------>ZmHOX2a(2) ---->ANAC46              <----------DOF2          --------->YAB1                          <------ZmHOX2a(2) ---->ANAC58            ---------->ID1        <--------P                                  --------->ARR14(2) ---->ANAC58       <----------DOF2          ----------->GT1                               <---------ARR14(2) -->AtMYB61 <---------TOE1(3)           ------>ZmHOX2a(2)                            --------->MYB52(1) ====================MADS_MADS         <---------GLK1(1)     <---------MYB46(3)    --------->MYB46(3) ---HVH21   <---------TOE2(3)      <------ZmHOX2a(2) <---------CCA1(2)<---------HSFB2a(2) <---------GLK1(2)   cccaatccaaatttagggtttcttttgtctttctgcgatcgatctctggtaactcataacttgttgttgaatcgcgaagatggcatcaaacggatccttc  17539900                                                                    <---------ARR14(2)                                                                 <---------ANAC46                                                                <---------LBD16                                                                <------NtERF2                                                               <---------MYB46(3)                                                          <---------At5g28300                                                        --------->ARR14(2)                                                        ----------->HVH21                                                        <---------ARR14(2) -------->ZAT2                                          <---------MYB52(1) -------->ZAT14                                      <---------ANAC46 ---------ZAT2                                      <---------LBD16<------NtERF2 ---------At4g35610                                ------------>AtMYB77                           <-- ---------ZAT14                             --------->ANAC58   ------>NtERF2                     <--- -------->At4g35610                         --------->ANAC58  --------->ALFIN1               -------- -HSFB2a(1)                               --------->MYB52(1)  <---------DEAR3(1)             <------- >HSFB2a(1)--------->ANAC58            --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)          -------- -HSFC1(2) --------->ANAC46            --------->ANAC58<-------GAMYB--------->ARR14(2)      <------ZmHOX2a(1) >HSFC1(2) --------->ANAC58          --------->CCA1(2)<---------MYB46(3)               <------ZmHOX2a(1)   tctgctcagagaaacgcaaacgctggaacaacgatgaagagacgaaacgacaatcgcggttacggtggcggaatcggatgttatcaagaggagaggaacc  17540000          --------->LBD16          <------NtERF2          ------>NtERF2         --------->DEAR3(1)         ----------->RAV1(1)         --------->RAP2.6(2)         --------->RAP2.3(2)         --------->RAP2.3(3)         --------->RRTF1(3)         --------->RRTF1(2)        --------->ATERF1(1)        --------->RAP2.3(1)        --------->ERF1        <------NtERF2        --------->RRTF1(1)       <---------ATERF1(1)       ------>NtERF2       --------->ABI4(1)      <---------ALFIN1      --------->RRTF1(3)      <---------ATERF1(2)      --------->RRTF1(2)      <---------DEAR3(1)      --------->DEAR3(1)      --------->RAP2.3(3)      --------->ATERF1(2)      --------->RAP2.3(2)     --------->ATERF1(1)     --------->RAP2.3(1)     --------->ERF1     --------->DEAR4(2)     --------->RRTF1(1)     --------->DEAR3(2)     --------->RAP2.6(1)     <------NtERF2     --------->ORA47(2)                                                                          <---    ------>NtERF2                                                                                <---    <---------ATERF1(1)                            ====================HOX2a_HOX2a               ----   --------->ANAC46                 ----------->RAV1(1)   --------->ICU4    <---------TOE2(3)    <--- --------->ANAC55(2)             ------->GAMYB     ------>ZmHOX2a(2)        <---------YAB1       <--- <---------ANAC55(2)           <---------At4g35610<------ZmHOX2a(2)       <---------ICU4         <--- <---------ANAC58              --------->At4g35610=====================HOX2a_HOX2a               <--- <---------ANAC58          --------->ANAC58      --------->ARR14(2)      --------->ICU4        <----- -------MYB52(1)           --------->ANAC58      <---------ARR14(2)      <---------YAB1     <-------- --------HVH21             ------>ZmHOX2a(2)--------->ARR14(2)         --------->YAB1       --------- ->ARR14(2)               <------ZmHOX2a(2) <---------ARR14(2)         <--------HAHB4    --------->YAB1 --ARR14(2)             <---------At4g35610<---------GLK1(1)    ------>ZmHOX2a(1)     --------->YAB1 ---->MYB.PH3(1)    <-----------HVH21  ------->GAMYB    --------->YAB1<---------YAB1 --------->ZAT6   gttacgcgccgccgcaaaaacgtttcagatcgcaactgcaacagcaattccgatctggtcataatcctctgtatcattatggtagtaatactaataataa  17540100                                                                                  <--------ATHB1                                                                                  --------->YAB1                                                                                 <---------YAB1                                                                                 --------->ICU4                                                                                 <---------ATHB12                                                                            --------->MYB52(1)                                                                            ------>MYB46(1) ------ANAC46                                                               ------>MYB83 ------ANAC58                                                              --------->MYB55(1) ----->ANAC55(2)                                  <---------ANAC58        <---------MYB46(2)        < ------ANAC55(2)                                  <---------ANAC46        <---------MYB59           - ------ANAC58                                     <---------ANAC58        <---------MYB111(1)      -- ------bZIP60(2)                               <---------WOX13(1)        --------->ANAC55(2)   ------ ------ANAC55(1)                    --------->ALFIN1                 <---------DAG2            ------ ------GT1                      <---------At5g28300                  <----------DOF2          ------- -ICU4                      <---------ICU4   --------->ATHB12       <---------ANAC58         -------- >YAB1                   <-----------GT1    <---------YAB1          <---------ANAC58      --------->ZAT6   cgtgtctagggtttcttctcagtcatataacaattacggtgttgatgtgattgcttctaattcaagttttgctttacctaacaatgattctaacaccaac  17540200  Previous    Next  AGI:  At5g43620.1    Description:  S-locus protein-related. similar to zinc finger (C2H2-type) family protein [Arabidopsis thaliana] (TAIR:AT1G66500.1); similar to S-locus protein 4 [Brassica rapa] (GB:BAA85453.1); contains domain PTHR15921 (PTHR15921) Range:  from: 17539747    to: 17541228    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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