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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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  <---------AHL20(2)
---------AHL20(1)     --------------->AtSPL8
-------->AHL20(2)     --------------->AtSPL3
---------AHL20(2)     <---------------AtSPL8
-------->AHL20(1)  <---------AHL20(2)
-------TOE2(3) --------->AHL20(2)
---->AHL20(2)  --------->YAB1
-----AHL20(2)  <---------AHL20(2)
----YAB1      <---------YAB1                                                   <-------TEIL
--->ICU4    --------->YAB1                                     --------->CCA1(2)
--ICU4     <---------YAB1                            <---------GLK1(2)      <------ZmHOX2a(1)
-ATHB51<---------AHL20(2)                       --------->ARR14(2)     --------->ALFIN1
>AHL20(2)  <---------AHL20(2)                   <---------ARR14(2)     <---------REM1(1)
>ICU4  --------->AHL20(2)                  <---------ANAC46   <---------ARR14(2)
-AHL20(2)  --------->AHL20(2)           <---------TOE2(3)     --------->ARR11(3)--------->ATHB12
 
aatattttatatatataattatataatggtacccattcagtttgtggtttggattcgattcttcagatatagaagtgtaggattcattgcgatatttctt  17501200
                                     --------->ATHB12
                                     -------->ATHB1
                                     --------->ATHB51--------->YAB1
                                    <---------AHL20(2)   --------->GLK1(2)                        --
                                    <---------YAB1   --------->AHL20(2)                          <--
                         <---------AHL20(2)  <----------DOF2                               <--------
               ----------->GT1      <---------ATHB51<---------ATHB12               --------->LBD16<-
   <------MYB83<---------ANAC46     --------->ICU4--------->WOX13(1)    --------->ICU4     ---------
   <------MYB46(1)      --------->AHL20(2)  ------>ZmHOX2a(2)   <---------AHL20(2) --------->HSFB2a(2)
<---------ANAC58     <---------AHL20(2)   <---------ARR11(3)   --------->AHL20(2)  <---------HSFB2a(2)
<---------ANAC58     --------->AHL20(2)   --------->ARR11(3)   --------->YAB1      ------>ZmHOX2a(1)
 
agtgcttggtttggggtttagtatatatataatatagaaattattgatcttttcaatcaaattctattatatataagtattagttcctcgaattaagtat  17501300
         --------->ALFIN1                                                          --------->AHL20(2)
   --------->AHL20(2)                                                             <---------YAB1
   <---------AHL20(2)                                                          <---------YAB1
   --------->AHL20(1)                                                          --------->AHL20(2)
------->AHL20(2)                 --------->ARR11(3)                         --------->AHL20(1)
-------AHL20(2)                  <---------ARR11(3)              --------->ICU4<---------AHL20(2)---
-ANAC55(2)               --------->ICU4            <---------MYB52(1)    --------->CCA1(2)      <---
--------AHL20(2)    --------->YAB1                 --------->At5g28300  --------->ARR11(3)      <---
>ANAC55(2)          ----------->GT1  ---------->DOF2           ------->TEIL <---------AHL20(1)  ----
 
tttaaataaaatgtgggtatcaatagtaatttttaaaatctaaagttttaaaccggtaattgtatgcacttattagatatatattattatttataccaat  17501400
                         --------->AHL20(1)
                         <---------AHL20(1)
                         <---------AHL20(2)
                    <---------ATHB51
             <-----------GT1   --------->AHL20(2)
          --------->YAB1 --------->AHL20(2)
         <---------YAB1 <---------ICU4
        --------->AHL20(2)     <---------AHL20(2)
        <---------AHL20(2)<---------YAB1
    <---------RVE1(1)   --------->YAB1                     --------->ANAC55(2)
    <---------CCA1(1)  --------->ICU4                      <---------ANAC55(2)
   --------->ARR11(3)  <---------YAB1          --------->ANAC58
   <---------ARR11(3)<---------ICU4            --------->ANAC58
   <---------AHL20(1)--------->YAB1            --------->ANAC46       <----------DOF2      <--------
------>CCA1(2)      <---------AHL20(2)       --------->MYB52(1)      --------->TOE2(3)  ----------->GT1
------AHL20(1)      --------->AHL20(2)      --------->TOE1(2)    <----------DOF2        --------->TOE2(3)
------ARR11(3)      --------->ICU4         <---------MYB52(2)<---------ZAT14           ----------->GT1
----->AHL20(1)  --------->AHL20(2) --------->YAB1        <-----------GT1   <-----------GT1 ---------
 
atataagatattttaataactaaataattataatttaaacataaaaacaaacgaaataagttactgaactttcctttataacaaaataaaacgtttaaat  17501500
                <---------AHL20(1)
       <----------DOF2                    <---------YAB1     <---------AHL20(2)              *TSS
  <-----------GT1                       <---------ICU4   --------->AHL20(2)               --------->GLK1(1)
 --------->AHL20(2)                    --------->ICU4----------->GT1                   --------->ANAC58
-AHL20(2)    <-----------GT1        ----------->TBP<------------CBF --------->ANAC46   --------->ANAC58
>AHL20(2) --------->YAB1            --------->AHL20(2)   <---------AHL20(2)      --------->AHL20(2)
 
gaaattaactcttttataacatatttatctactgagtctataaatatgactaaatattgtttaaataatccacagcaaaacaaaataaaaacgaaatcca  17501600
                                                                                         <---------AHL20(2)
                                                                                        --------->AHL20(2)
                                      <---------MYB46(3)                          --------->ZAT6
                                      ----------->GT1               ------>ZmHOX2a(1)   <---------AHL20(2)
                                 --------->ARR11(3)<---------------AGL15        <-----------GT1
                       <---------AHL20(2)          --------------->AGL15     --------->TOE2(3)  xxxx
 
aaacgattcacaaaaacatttcatatttttttttgtgatattggttaatttctaccaaaaaatgaagtgtccttctatattcttaactctattaattttt  17501700
                             <------ZmHOX2a(1)     <---------ICU4
                             --------->YAB1        --------->YAB1
                            <---------YAB1         <--------HAHB4
                           <---------TOE2(3)       --------->ATHB12
                          --------->YAB1          --------->ICU4
                      --------->AHL20(2)          <---------YAB1
                      <---------AHL20(2)          <---------ATHB12
                     --------->AHL20(2)         --------->YAB1
                  --------->AHL20(2)           <---------YAB1                                      <
                  <---------AHL20(2)          <---------AHL20(2)                               <----
                 --------->AHL20(2)           --------->AHL20(2)                    <----------DOF2<
                 <---------AHL20(2)          --------->YAB1                      <---------ARR11(3)-
                 <---------AHL20(1)         <---------YAB1                       --------->ARR11(3)-
xxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ICU4        ----------->GT1  <---------CCA1(2)  -
 
gtttcttcatgtaagtctaaattatttaattaggataatgtgtcagtattataatcattacaaaaactgtttaaaaatttgatatatcttttgaaaattt  17501800
                                                                                    <xxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                  xxxxxxxxxxxxxxxxxx
                                                                                 --------->ANAC58
                                                                                 --------->ANAC46
                                                                                 --------->ANAC58
                                                                               <---------ALFIN1
                                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                       ==============HOX2a_HOX2a
                                                             --------->MYB46(3)xxxxxxxxxxxxxxxxxxxxx
                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                          xxxxxxxxxxxxxxxx>smallRNA(i)
                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxx
    --------->REM1(1)                             <----------DOF2      ------>ZmHOX2a(1) <xxxxxxxxxx
   <-------TEIL                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ZAT14
<------MYB83                                --------->ARR11(3)         xxxxxxxxxxxxxxxx>smallRNA(i)
<------MYB46(1)                             <---------ARR11(3)         <----------DOF2  <xxxxxxxxxxx
---------------AtSPL8                       --------->AHL20(1)        <xxxxxxxxxxxxxxxxsmallRNA(i)
-----YAB1                                   <---------AHL20(2)        xxxxxxxxxxxxxxxx>smallRNA(i)
---------------AtSPL3                       --------->AHL20(2)    xxxxxxxxxxxxxxxx>smallRNA(i)   <--
-------------->AtSPL3        <---------ZAT6 <---------AHL20(1) <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxx
-------->MYB59  <---------YAB1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)------>ZmHOX2a(2)  ---
-------------->AtSPL8  ------->TEIL       --------->GLK1(2)----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxx
 
gataggtacatcaatacttataaatgaatctagtgatgaacagagaatatattctttcagtccaacaacaagtccttttgatccacgctcactgaaccaa  17501900
                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                                          <---------ANAC58
                                          xxxxxxxxxxxxxxxx>smallRNA(s)
                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                                        <---------ARR11(3)
                                        --------->ARR11(3)
                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                  <---------ANAC46
                                 --------->ZAT18
                                 <---------LBD16
                                <xxxxxxxxxxxxxxxxsmallRNA(i)
                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                               xxxxxxxxxxxxxxxx>smallRNA(i)
                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                               <---------WOX13(1)
                              <---------ANAC58
                              <---------ANAC58
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                            <---------YAB1<---------ANAC58
                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                         xxxxxxxxxxxxxxxx>smallRNA(i)
                         <xxxxxxxxxxxxxxxxsmallRNA(i)
                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                        xxxxxxxxxxxxxxxx>smallRNA(i)
                     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                    xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                  xxxxxxxxxxxxxxxx>smallRNA(i)
               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
   <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
xsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
x>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xx>smallRNA(si3) <---------MYB46(3)--------->LBD16 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxxsmallRNA(si3)--------->ATHB12     ----------->HVH21
xxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              --------------->AtSPL3
xxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->KAN4(2)
-------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <----------TaMYB80                <-
xxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)   <--------P                             ---
------>ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <------
xsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC46               ---------->DOF2<
 
gaacttaaaattgggagaattggttactgttttgattgcgcaagagcttgtatgagacggggtaagtatattcgtacatgtagttttgaaagaaaacttt  17502000
                                                          --------->AHL20(2)
                                                          --------->YAB1
                                                       --------->YAB1
                                                      <---------YAB1
                                              --------->TOE2(3)--------->ARR11(3)
                   <---------AHL20(2) ----------->GT1 --------->ICU4            <-------TEIL
--------MYB46(3)  --------->AHL20(2)<----------DOF2 <---------ICU4          <---------TOE2(3)
------->ID1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1        <---------AHL20(2)       <
----DOF2<---------YAB1           <-----------GT1 --------->YAB1<---------AHL20(1)              <----
-------GAMYB<---------ZAT6    ----------->GT1<---------ICU4    --------->AHL20(1)           ------>ZmHOX2a(1)
 
gtcgttgcagtattagtgatattaaataaggcattgtaactttgttaaacattaataataataaaaaatattgctgtttaatgttcatccatgtccttct  17502100
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AGI:  At5g43518.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43510.2); contains domain PROKAR_LIPOPROTEIN (PS51257)
Range:  from: 17501594    to: 17502080    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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