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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
---------
AHL20(1)
--------------->
AtSPL8
-------->
AHL20(2)
--------------->
AtSPL3
---------
AHL20(2)
<---------------
AtSPL8
-------->
AHL20(1)
<---------
AHL20(2)
-------
TOE2(3)
--------->
AHL20(2)
---->
AHL20(2)
--------->
YAB1
-----
AHL20(2)
<---------
AHL20(2)
----
YAB1
<---------
YAB1
<-------
TEIL
--->
ICU4
--------->
YAB1
--------->
CCA1(2)
--
ICU4
<---------
YAB1
<---------
GLK1(2)
<------
ZmHOX2a(1)
-
ATHB51
<---------
AHL20(2)
--------->
ARR14(2)
--------->
ALFIN1
>
AHL20(2)
<---------
AHL20(2)
<---------
ARR14(2)
<---------
REM1(1)
>
ICU4
--------->
AHL20(2)
<---------
ANAC46
<---------
ARR14(2)
-
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(3)
--------->
ARR11(3)
--------->
ATHB12
aatattttatatatataattatataatggtacccattcagtttgtggtttggattcgattcttcagatatagaagtgtaggattcattgcgatatttctt
17501200
--------->
ATHB12
-------->
ATHB1
--------->
ATHB51
--------->
YAB1
<---------
AHL20(2)
--------->
GLK1(2)
--
<---------
YAB1
--------->
AHL20(2)
<--
<---------
AHL20(2)
<----------
DOF2
<--------
----------->
GT1
<---------
ATHB51
<---------
ATHB12
--------->
LBD16
<-
<------
MYB83
<---------
ANAC46
--------->
ICU4
--------->
WOX13(1)
--------->
ICU4
---------
<------
MYB46(1)
--------->
AHL20(2)
------>
ZmHOX2a(2)
<---------
AHL20(2)
--------->
HSFB2a(2)
<---------
ANAC58
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
HSFB2a(2)
<---------
ANAC58
--------->
AHL20(2)
--------->
ARR11(3)
--------->
YAB1
------>
ZmHOX2a(1)
agtgcttggtttggggtttagtatatatataatatagaaattattgatcttttcaatcaaattctattatatataagtattagttcctcgaattaagtat
17501300
--------->
ALFIN1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(1)
--------->
AHL20(2)
------->
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(1)
-------
AHL20(2)
<---------
ARR11(3)
--------->
ICU4
<---------
AHL20(2)
---
-
ANAC55(2)
--------->
ICU4
<---------
MYB52(1)
--------->
CCA1(2)
<---
--------
AHL20(2)
--------->
YAB1
--------->
At5g28300
--------->
ARR11(3)
<---
>
ANAC55(2)
----------->
GT1
---------->
DOF2
------->
TEIL
<---------
AHL20(1)
----
tttaaataaaatgtgggtatcaatagtaatttttaaaatctaaagttttaaaccggtaattgtatgcacttattagatatatattattatttataccaat
17501400
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
<---------
ATHB51
<-----------
GT1
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
<---------
YAB1
<---------
ICU4
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<---------
RVE1(1)
--------->
YAB1
--------->
ANAC55(2)
<---------
CCA1(1)
--------->
ICU4
<---------
ANAC55(2)
--------->
ARR11(3)
<---------
YAB1
--------->
ANAC58
<---------
ARR11(3)
<---------
ICU4
--------->
ANAC58
<---------
AHL20(1)
--------->
YAB1
--------->
ANAC46
<----------
DOF2
<--------
------>
CCA1(2)
<---------
AHL20(2)
--------->
MYB52(1)
--------->
TOE2(3)
----------->
GT1
------
AHL20(1)
--------->
AHL20(2)
--------->
TOE1(2)
<----------
DOF2
--------->
TOE2(3)
------
ARR11(3)
--------->
ICU4
<---------
MYB52(2)
<---------
ZAT14
----------->
GT1
----->
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
<-----------
GT1
<-----------
GT1
---------
atataagatattttaataactaaataattataatttaaacataaaaacaaacgaaataagttactgaactttcctttataacaaaataaaacgtttaaat
17501500
<---------
AHL20(1)
<----------
DOF2
<---------
YAB1
<---------
AHL20(2)
*
TSS
<-----------
GT1
<---------
ICU4
--------->
AHL20(2)
--------->
GLK1(1)
--------->
AHL20(2)
--------->
ICU4
----------->
GT1
--------->
ANAC58
-
AHL20(2)
<-----------
GT1
----------->
TBP
<------------
CBF
--------->
ANAC46
--------->
ANAC58
>
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
gaaattaactcttttataacatatttatctactgagtctataaatatgactaaatattgtttaaataatccacagcaaaacaaaataaaaacg
aaatcca
17501600
<---------
AHL20(2)
--------->
AHL20(2)
<---------
MYB46(3)
--------->
ZAT6
----------->
GT1
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
ARR11(3)
<---------------
AGL15
<-----------
GT1
<---------
AHL20(2)
--------------->
AGL15
--------->
TOE2(3)
xxxx
aaacgattcacaaaaacatttcatatttttttttgtgatattggttaatttctaccaaaaa
atgaagtgtccttctatattcttaactctattaattttt
17501700
<------
ZmHOX2a(1)
<---------
ICU4
--------->
YAB1
--------->
YAB1
<---------
YAB1
<--------
HAHB4
<---------
TOE2(3)
--------->
ATHB12
--------->
YAB1
--------->
ICU4
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
ATHB12
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
<---------
YAB1
<
<---------
AHL20(2)
<---------
AHL20(2)
<----
--------->
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
<
<---------
AHL20(2)
--------->
YAB1
<---------
ARR11(3)
-
<---------
AHL20(1)
<---------
YAB1
--------->
ARR11(3)
-
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ICU4
----------->
GT1
<---------
CCA1(2)
-
gtttcttcat
gtaagtctaaattatttaattaggataatgtgtcagtattataatcattacaaaaactgtttaaaaatttgatatatcttttgaaaattt
17501800
<xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxx
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
ALFIN1
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
==============
HOX2a_HOX2a
--------->
MYB46(3)
xxxxxxxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxx
--------->
REM1(1)
<----------
DOF2
------>
ZmHOX2a(1)
<xxxxxxxxxx
<-------
TEIL
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ZAT14
<------
MYB83
--------->
ARR11(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<------
MYB46(1)
<---------
ARR11(3)
<----------
DOF2
<xxxxxxxxxxx
---------------
AtSPL8
--------->
AHL20(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
-----
YAB1
<---------
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
---------------
AtSPL3
--------->
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<--
-------------->
AtSPL3
<---------
ZAT6
<---------
AHL20(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxx
-------->
MYB59
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
------>
ZmHOX2a(2)
---
-------------->
AtSPL8
------->
TEIL
--------->
GLK1(2)
----------->
RAV1(1)
<xxxxxxxxxxxxxxxxxxxxx
gatag
gtacatcaatacttataaatgaatctagtgatgaacagagaatatattctttcagtccaacaacaagtccttttgatccacgctcactgaaccaa
17501900
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<---------
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<---------
ARR11(3)
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ANAC46
--------->
ZAT18
<---------
LBD16
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
WOX13(1)
<---------
ANAC58
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
YAB1
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
x
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
x>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xx>
smallRNA(si3)
<---------
MYB46(3)
--------->
LBD16
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ATHB12
----------->
HVH21
xxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------------->
AtSPL3
xxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
KAN4(2)
-------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<----------
TaMYB80
<-
xxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<--------
P
---
------>
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<------
x
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ANAC46
---------->
DOF2
<
gaacttaaaattgggagaattggttactgttttgattgcgcaagagcttgtatgagacggggtaagtatattcgtacatgtagttttgaaagaaaacttt
17502000
--------->
AHL20(2)
--------->
YAB1
--------->
YAB1
<---------
YAB1
--------->
TOE2(3)
--------->
ARR11(3)
<---------
AHL20(2)
----------->
GT1
--------->
ICU4
<-------
TEIL
--------
MYB46(3)
--------->
AHL20(2)
<----------
DOF2
<---------
ICU4
<---------
TOE2(3)
------->
ID1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
YAB1
<---------
AHL20(2)
<
----
DOF2
<---------
YAB1
<-----------
GT1
--------->
YAB1
<---------
AHL20(1)
<----
-------
GAMYB
<---------
ZAT6
----------->
GT1
<---------
ICU4
--------->
AHL20(1)
------>
ZmHOX2a(1)
gtcgttgcagtattagtgatattaaataa
ggcattgtaactttgttaaacattaataataataaaaaatattgctgttta
atgttcatccatgtccttct
17502100
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AGI:
At5g43518.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43510.2); contains domain PROKAR_LIPOPROTEIN (PS51257)
Range:
from: 17501594
to: 17502080
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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