Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------YAB1                   --------->At4g35610            ------>NtERF2                 <-----------RAV1(2)             ----------->HVH21                <---------At4g35610              <---------ETT(1)                                 ---             ------>ZmHOX2a(1)                  --------->SPL7                             ------>NtERF2   <-----------GT1 <---------At4g35610 <---------ARR14(2)                                  <---------ZAT18 ---------ICU4  --------->LBD16        --------->ARR14(2)          --------->MYB52(1)      --------->LBD16 -------->YAB1<---------LBD16    --------->REM1(1)----------->RAV1(1)                  --------->ANAC46   aaacattaccttctcctccgcagatgattcttccttcaccagttactccctccgacaaaaactctgggcaaaccgatgttcacaattccactccgcgctc  17149900                    <---------At4g35610                                                   --------->RVE1(1)                    --------->At4g35610          <----------DOF2           --------->YAB1--------->ARR11(3)                    ------>NtERF2 --------->RAP2.6(3)                   --------->YAB1   <---------ARR11(3) --->NtERF2     <-----------RAV1(1)     <------NtERF2      <---------MYB52(1)      ----------->GT1   tgcctctctggctcacatatgccgctctctctctatttcggcatcgatgttctttgtctccgttttgtatgcattgatcatattgttgtaaaatctcttc  17150000         <---------AHL20(2)             --------->ATHB51                         <---------MYB52(2)   ------>ZmHOX2a(2)                   <---------YAB1                         --------->MYB46(3) <---------ARR11(3)          <-----------GT1                                <-----------GT1 --------->ARR11(3)        <---------AHL20(2)   --------->ZAT18        <---------ATHB12   atcgatcttatattatgtctcttactaatttaaactaaactataattgaatggactaaaacgaatataaacaaatgaataaccactaactagaatggttt  17150100                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                                <----                                                                                              -------                                                                                              -------                                                                                             <-------TEIL                                                                                            ---------                                                       --------->ANAC58                    <---------SPL7                                            ------>ZmHOX2a(1)                            <-----------                                          <---------ICU4        --------->AHL20(2)       <---------TOE2(3)                               <---------HSFB2a(2)     <----------ID1--------->YAB1      <-----------   ------>MYB46(1)          --------->GLK1(2)          --------->ANAC58               <---------ATHB12   ------>MYB83 <---------PCF2 --------->HSFB2a(2)---------->DOF2<---------AHL20(2) --------->WOX13(1)   -------->P   <---------ARR14(2)      <---------ARR14(2)      <---------AHL20(2) --------->AHL20(2) --------->AtMYB61  ------>ZmHOX2a(1)   --------->ARR14(2)  --------->ICU4         <---------AHL20(2)   agaccaactccattggagggtccttaagagtttctagtactgaatccttacaaaaagaagccaaaattaaatcagaaaaatgaaattaatcaaggtacgc  17150200                                             --------->ARR14(2)                                             <---------ARR14(2)                                            <-------GAMYB                                          <---------ANAC46                                          <---------ANAC58                                          <---------RAP2.6(2)                                          <---------ANAC58                                         <------NtERF2                                        ------------>AtMYB77                                       --------->ALFIN1        --------->ANAC55(2)          --------->ANAC46       --------->MYB59               <---------ANAC58      --------->MYB59       <---------TOE2(3)             --------->ANAC55(2)   <---------TOE1(3) ------->TOE1(3)                     <---------O2  <------------CBF ------->TOE2(3)                     <---------ANAC58      --------->DAG2 --------DAG2                     --------->ARR14(2)       <---------TOE2(3) --->TEIL                         <---------ARR14(2)  <---------MYB46(3)              <----------DOF2 -----ALFIN1                   <---------ANAC58 ----------------->AGL1         <---------AHL20(2) -->ANAC58                     <---------ANAC46<-----------------AGL1         <---------AHL20(2) -->ANAC58                     <---------ANAC58<-----------------AG           <---------AHL20(1) >CCA1(2)                     <-------TEIL<---------DEAR3(1)                  --------->AHL20(2) ----AtSPL8                <---------ANAC58<---------DEAR3(2)            ------------>CBF  ------>ZmHOX2a(1) ----AtSPL3                <---------ANAC58<---------MYB46(3)     <----------ID1   <-----------GT1   accttagcttaggtattttgtgatgttttaggtgcgtatacgtggcggtttcccattgggtaaggtaagagacaaaacaattttttttctttcctctgtt  17150300                                                                      --------->bZIP60(2)                                                                  <------NtERF2                                                                 ------>NtERF2                                                                 <---------ATERF1(1)                                                                 <---------SPL7                                                                --------->DEAR3(1)                                                                <---------ANAC58                                                                <---------ANAC46                                                                <---------ANAC58                                                               ------>NtERF2                                                               --------->ATERF1(1)             *TSS                                              <------NtERF2      <------------CBF                                        <---------RAP2.3(1)     --------->YAB1                                           <---------ATERF1(1)     -------->ATHB1                                          <---------DEAR3(1)     --------->ATHB12                                       <---------LBD16     <---------ICU4                                     <-------TEIL  --------->ANAC46        -------    <---------YAB1              --------->LBD16      --------->At4g35610                   --------->MYB52(1)    --------->ICU4            <---------LBD16        <---------At4g35610                 <---------ARR11(3)    <---------ATHB12        <-----------GT1       <------ZmHOX2a(2) <---------ALFIN1     --------->ARR11(3)   tgcgaaatcattgtctctcttctcttgttttctccggatgaattctctctcgatcagcttcatgcggcgtccacatcatcaaattggagaagataaccga  17150400                                    ------->GAMYB                                    ----------->HVH21                                    --------->DEAR3(1)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                           <---------ICU4                        <---------ICU4                        --------->YAB1                       <---------YAB1                       --------->ICU4--------->MYB52(1)                      <---------ARR11(3)                                                  <---------ARR14(2)                  <---------ANAC46 <---------MYB55(2)                                     --------->ARR14(2)                 xxxxxxxxxxxxxxxx>smallRNA(s)                   --------->YAB1           ------>MYB83                ------>NtERF2--------->At4g35610 <---------ARR11(3)                      ------>MYB46(1)  <-----------ARR10--------->LBD16 --------->MYB46(3) ----------->HVH21              ------->TEIL >GAMYB         --------->LBD16    --------->DEAR3(2)<-----------HVH21         <---------YAB1   agaaaatcgtcccccttccgccgtgatcatcatctcaaccgacggtctcaacatctgtgacttcgaacataatcggcgattttgatgaaccaaatcggag  17150500                                      --------->YAB1                        <------ZmHOX2a(1)                <---------AHL20(2)                       ---             --------->ARR11(3)   <---------YAB1      --------->YAB1                     <---------WRKY12           <---------YAB1       --------->YAB1  --------->ANAC58                         <---------WRKY38(1)           <---------TOE2(3) <---------GLK1(1)  --------->ANAC58   --------->YAB1   <---------LBD16 -       --------->YAB1 <---------TOE2(3)       ---------->DOF2--------->YAB1    --------->GLK1(2) <---   agagaagattaataagatagttttgaggaagaaatcacaattagagcttaaagcaagaataaatcacaatcacaagatgagaatttttcggacaacgtag  17150600                                                                                             ------>ZmHOX2a(1)                                                                                         <---------ARR11(1)                                                                                         --------->ARR14(2)                                                                                         <---------ARR14(2)                                                                                        <---------CCA1(2)                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                 <----------DOF2         --------->WOX13(1)                                                     ------>ZmHOX2a(2)       --------->WRKY18(1)                 ------->GAMYB <<<<<<<GRF7            =====================     --------->WOX13(1)                 <-----------GT1================================HOX2a_HOX2a ------>YAB1                      ----------->GT1      ------>ZmHOX2a(1)      <---------ARR11(3) -------->ICU4           ----------->HVH21--------->MYB46(3) --------->MYB52(1) ====================HOX2a_HOX2a ------ZAT6      ---------->DOF2  <---------ZAT6       ----------->HVH21      --------->ARR11(3)-----   tgataatcagtcaatcggagaaagaaggtgacccgagtgttataaccatcaattgtcctgacaaaacgggtctaggttgtgatctttttcgtatcctcct  17150700                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                        <---------ANAC58                       <-----                                                        <---------ANAC58                      <------                                                        <-----------RAV1(1)                 <--------                                                        <---------ANAC46                  --------->At4g35610                                                    <----------DOF2                       <---------At4g35610                                            --------->YAB1                               <-----------RAV1(1)                                            <---------ICU4                            --------->ARR11(3)                                            --------->ATHB12                          --------->ARR14(2)        <------NtERF2                       <--------HAHB4                            <---------ARR11(3)     ------>NtERF2                         <---------YAB1                             <---------ARR14(2) ==HOX2a_HOX2a           ----------->GT1   --------->ICU4 <---------AtMYB61          <---------GLK1(1) ->ZmHOX2a(1)          <------ZmHOX2a(1)   <---------ATHB12                   <---------YAB1<--------   cttcttcggcctcaacattgtctgaggaggtaacaattccatctcatcattacactttgtgtggttttcaaaaatttcttatttttgatatctgctgtgg  17150800  Previous    Next  AGI:  At5g42720.1    Description:  glycosyl hydrolase family 17 protein. similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G34480.1); similar to unknown [Populus trichocarpa] (GB:ABK95331.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 17147414    to: 17150071    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g42730.1    Description:  expressed protein, similar to Adagio 3 (Arabidopsis thaliana) GI:13487072/FKF1 (Arabidopsis thaliana) GI:6960305 Range:  from: 17150313    to: 17151443    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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