Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <------MYB83                                                                <XXXXXXXXXXXXXXXXX       <------MYB46(1)                                                       <---------ANAC58     <---------WOX13(1)                                                      <---------ANAC46 ------->DOF2                                                                <---------ANAC58       - ----ID1                           ----------->GT1  <---------TOE2(3)    <---------MYB52(1)         <   caaagagattggtatgagaaaacccaaactaaaccaagagtgaatttggaatcaaaggttagagaattcatcttcgtttgcttgtttttgttctctctcc  16994500                                        --------->TOE2(3)         <-------TEIL      <---------ANAC46     <---------TOE1(2)     <---------ANAC58    --------->LBD16        <---------ANAC58    ------>ZmHOX2a(1) <---------HSFB2a(1)                            <-----------GT1                <   <---------LBD16    <-----------RAV1(1)                         --------->RVE1(1)         <-------- XXXXMIR2936--------->ANAC46   <---------YAB1          <----------DOF2       <---------HSFB2a(2) ---- -------->ARR14(2)    --------->HSFB2a(1)  ---------->DOF2  --------->ANAC46 --------->HSFB2a(2) ---- ---------ARR14(2) <------ZmHOX2a(1)<---------AHL20(2) ------>ZmHOX2a(1)   --------->At4g35610 <-----   cagttcctgggttcacgacgaggaatgttgcatatgattttatctcaaagagtaatccttttacgaaaatatcactcttctgcaaatgcccttgttacca  16994600                                                  --------->ANAC55(1)                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->ANAC55(2)                                                  <---------ANAC55(2)                                                  --------->ANAC58                       <-------GAMYB         ----------->HVH21                      <------MYB83          ------>ZmHOX2a(2)                      <------MYB46(1)      <------ZmHOX2a(2)     ------>MYB83     <---------MYB46(3)  <---------ARR14(2)     ------>MYB46(1)  ----------->GT1     --------->ARR14(2) -----------GT1     <--------P            <---------AGP1<---------ZAT18                     <-------- ---GT1--------->GLK1(2)                 <---------CCA1(2)------->TEIL                   <---------At4g35610 -->MYB83       --------->LBD16    --------->ATHB12  ---------->DOF2     --------->ANAC46--------->At4g35610 -->MYB46(1)   --------->LBD16--------->ARR11(3) <-------TEIL     --------->ALFIN1------>ZmHOX2a(1) ----MYB59    <---------LBD16--------->YAB1<---------At4g35610 --------->DAG2     --------->LBD16----   aatcaccaaattctatccccgagttggttaaacatattgattcggatctgatacgtaatgcacataaggtgttcgacgaaattcctgagttagatgtcat  16994700                  ---------->ID1                <------MYB83                <------MYB46(1)              <---------WOX13(1)            <---------MYB46(3)            --------->MYB55(2)                      --------->ANAC58            --------->ATHB12                        --------->ANAC58    <-------GAMYB        <---------DEAR3(1)                      --------->ANAC58       --------->MYB111(2)       <---------At4g35610                 <-------MYC3                <---------MYB46(3) <---------At4g35610               --------->At4g35610   --------->ANAC58                  ---------- --------->At4g35610  <----------DOF2      ------->MYC3  --------->ANAC58                <----------ID1 ---HVH21 --------->At5g28300      <---------At4g35610--------->WRKY18(1)   <---------ANAC46 ----->ARR14(2)<---------AtMYB61---------->DOF2 --------->ANAC58   --------->DAG2       --------->DAG2   ttctgctacagcggtgattggtcgctttgtgaaggaaagcagacatgtggaagcaagtcaagccttcaaaaggttgttgtgtttaggcataaggccaaat  16994800                                                                 <-------TEIL                                                                <----------DOF2                                                              <---------At4g35610                                                              --------->ZAT2                                                              --------->At4g35610             <------                  <------------CBF            <-----------------AG                            <------                 <---------MYB46(3)           ----------------->AGL1                          <------                 --------->ATHB12           ----------->GT1<---------At4g35610   <---------TOE2(3)               --------->At5g28300    <---------HSFB2a(2) --------->ANAC58      <---------DOF5.7(2)               <-----------HVH21      --------->HSFB2a(2) --------->ANAC58      ---------->DOF2             --------->ANAC58  --------->REM1(1)        <--------P <------------CBF       <---------ANAC58  <---------DOF5.7(2)        <---------HSFB2a(2)     --------->MYB59   *TSS   --------->DOF5.7(2) ------->AGL1--------->ANAC58--------->HSFB2a(2)  <------------CBF--------->ATHB12        <---------ANAC58   gagttcacgtttggcacggtcattgggtcttctacaacttcgagagatgtcaaattgggtaagcagcttcattgttatgcgttaaagatgggacttgcgt  16994900                     --------->ARR14(2)                  <---------RAP2.6(2)                 <---------ZAT14                 --------->ZAT18        <-------GAMYB<---------ARR14(2)       <---------MYB46(3)       --------->MYB52(2)                                <---------GLK1(2)       --------->MYB111(2)                              <---------At4g35610       --------->MYB55(2)         <---------ANAC46 --------->WRKY38(1) ---ANAC58       <---------ZAT18  <---------ANAC55(2)   --------->At4g35610 ---ANAC58 <------MYB46(1)        ----------->GT1  ----------->HVH21           --------->ZAT6 ---ANAC46 <------MYB83        <---------MYB52(1)  --------->WRKY12<---------ARR11(3)   cgaatgtgtttgttggtagtgcggttttgaactgttatgtgaaactgagtacgttgacagatgctcgtagatgttttgatgacactagagacccaaacgt  16995000                        <---------PCF2                       <------MYB46(1)                       <------MYB83                                                            <-----                      <---------MYB46(3)                                                       <-----                      <---------------AtSPL8                 <---------MYB52(1)                <-----               --------->ATHB12                             <-------GAMYB                     -------              <---------YAB1--------->TOE1(3)        --------->ARR11(3)                   -----------         --------------->AGL15            ------->TEIL  <----------DOF2                --------->ALFIN1        ----------------->AG--------->TOE2(3)        <---------ARR11(3)            <---------ZAT14   agtttctattaccaatttgattagtgggtaccttaagaaacatgaatttgaagaagctctttcgttgtttagagcaatgcctgagagaagtgttgttact  16995100                                                                                             ------>MYB46(1)                                                                                             ------>MYB83                                                                                            ---------                                                                                           <---------MYB46(2)                                                                                           <---------MYB59                                                                                           <---------MYB52(2)                                                                                   <---------ANAC46                                                                                --------->ALFIN1                                                                              <------MYB83 <---------MYB111(1)        --------->ATHB12           <---------SPL7                <---------GLK1(1) ----------->GT1       <---------MYB52(1)          <------NtERF2                --------->ARR14(2)<---------AtMYB61 ----ANAC46                     ------>NtERF2              <---------ANAC46   <------MYB46(1)-------- ----ANAC58                 <---------O2                <----------DOF2 <---------TOE1(3) <---------ANAC55(2) ----ANAC58                 <---------TGA1a     --------->At5g28300     <---------TOE2(3) --------->ANAC55(2) -->MYB52(2)                =======================================bZIP_DOF  <---------AtMYB61 >GT1  --------->ICU4    ----------->HVH21     ----------->GT1  <---------ARR14(2)--------->ALFIN1   tggaatgcagttattggagggtttagccagacggggcggaacgaagaggctgtgaatacttttgtggatatgttaagggaaggtgtggtgatacctaacg  16995200                                                                               ---------->DOF2                                                                            <----------DOF2                                                                        --------->ZAT18                                                                       <---------ATERF1(1)                                                                      <---------DEAR3(1)      ------>MYB83                                                 --------->ANAC58      ------>MYB46(1)                  <---------GLK1(2)      --------->ARR14(2)    --------->AtMYB61       --------->ARR14(2)        ----------------------->TaNAC69(2) --------->HSFB2a(2)  ------->TEIL              <---------ARR11(3)     <---------ANAC46--------->ANAC46      <---------HSFB2a(2)  -------->P                <---------ARR11(1)    <---------At4g35610----------->RAV1(2)<---------LBD16 <-----------GT1           <---------CCA1(2)  <-----------RAV1(1)  --------->ANAC58--------->ARR11(3) >MYB55(1)            ------->GAMYB    <---------ANAC58       <---------ARR14(2)   <---------ARR11(3) ->MYB52(1)          --------->MYB46(3)<---------ANAC58<--------P<-----------GT1--------->DAG2   aatcaaccttcccttgtgctataacagccatatctaatatagcttctcatggtgctggtaagagtattcacgcctgcgctataaagttcttggggaagcg  16995300                                                                        <----------DOF2                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                  --------->At4g35610             ---                                                           <---------ARR11(3)                    ----                                                           --------->ARR11(3)                  ------                 <---------GLK1(1)                         <---------ARR14(2)   --------->ANAC58 ----       <----------DOF2                       --------->ALFIN1     <---------At4g35610    >>>>>>>>>TBF1    <---------ARR11(3)            <-----------GT1          --------->ARR14(2)   --------->ANAC58 ----   attcaatgtctttgtttggaactctctgatcagtttttactcaaaatgtgggaacatggaagatagtcttctggctttcaacaagctcgaagaagaacaa  16995400  Previous    Next  AGI:  At5g42450.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18097.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16994871    to: 16996244    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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