Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                               ------                                                                                           ----------                                                                                           <---------                                                                                          -----------                                        --------->ICU4                                    -----------            --------->MYB46(3)          <---------YAB1    <-----------TBP                 <----------  *TSS     ------------>CBF          --------->ICU4      <----------DOF2                  ----------- --------->DOF2                 <---------REM1(1) <----------DOF2                --------->MYB59<---- ----->GT1<-----------GT1    <-----------RAV1(1) <----------DOF2      ------------>CBF    <----------   tcaaaagaaaattaacaatcgagttttgaatttgttgtagtcattaatgggcctttgggcttttatatggttttcaatggagttaagtcatgtccattta  16796600           --------->MYB52(1)   <---------ANAC55(2)   --------->ANAC55(2) ---------MYB52(1) ------->At5g28300 ------GAMYB -------->GT1 ------TOE1(3) ------TOE2(3) ------>AtMYB77 ----->AGL15 ------AGL15 ------>AGL1 ------>AGL2                                           <---------HSFC1(2)                   <-------- -------AGL2                                 --------->DAG2    ------->TEIL                 --------- ------>AGL3                               ---------->DOF2    <---------GLK1(2)   --------->WOX13(1) -----At5g28300                    <---------YAB1      --------->HSFC1(2)   <---------ANAC55(2) -------AGL1                    <----------DOF2 --------->ALFIN1            --------->ANAC55(2)<-----   cggttacttaaactaatgggtctattgttttgaacttttgattttaaaaggtggagatggttctgaatctctctggttaagtatcaatccatgagacctt  16796700                                                                                       <---------AHL20(2)                             <---------AHL20(1)                                       <---------AHL20(2)                             --------->AHL20(1)                                       --------->AHL20(2)                            <---------AHL20(2)                                ----------->HVH21                            --------->YAB1                                    ------->GAMYB -ARR11(3)          ----------->GT1         --------->MYB52(1)               <---------MYB52(2) >ARR11(3)       ------->TEIL<---------AHL20(2)                             --------->At4g35610 -----DOF2  <---------AtLEC2--------->AHL20(2)      <-----------GT1        --------->MYB52(1)   ttttttttttttttgaatgaatgtgtgaaattatattcaactaaaacaactgttttacaaatcaaattcaactaaaacaactgacaaattaaatctctct  16796800                                                                       ----------------->AG                                                                   <----------DOF2                                                                <---------ARR14(2)                                                                <-----------ARR10                   <                                                                --------->ARR14(2)                 <-                                                                <---------ARR11(3)                 <-               <---------AHL20(2)                               <---------ARR11(1)                <--              <---------YAB1                                   <---------ARR14(1)                <---        <-------TEIL                                           ------>MYB83                     <----     ----------->GT1                                           <---------CCA1(2)     <---------ZAT18<    --------------->AtSPL8                                     ------>MYB46(1)    <---------MYB46(3)<    <---------------AtSPL8         --------->ANAC46      --------->ZAT18      <---------ANAC58  <----  <---------ANAC46              <---------REM1(2)        <---------ZAT14      <---------ANAC58  <----   ggttaagtggtacatttttaatgtctctagtctctacacataaacgattaacatgagagttcaccaaatcttttccaattgggtttgttcacttggtttc  16796900         <---------ICU4         --------->YAB1 ------MYB46(1) --------TOE2(2) --------TOE1(2) -------MYB52(1) ----GAMYB                        ----------->GT1        ----------->GT1                      ------- -----ANAC58               ----------->GT1        ---------->DOF2                       --------->YAB1 ------MYB83          --------->AHL20(2)        ------------------------>ANAC81 --------->At4g35610<- ---------MYB46(3)    <---------AHL20(2)     ----------->GT1                    <---------At4g35610-- -----ANAC46       --------->AHL20(2)      ---------->DOF2     ---------->DOF2<------ZmHOX2a(1) ----- -----ANAC58      --------->AHL20(2)--------->AHL20(2) ---------->DOF2       *TSS       <---------ICU4   gttggttttaatcttcacaaataaaaaaatggttttaagtaaatagaaagaaaaaagaaaagaaaaaaagagtaatcgaaggagctgtaatcttcacaaa  16797000                                         --------->GLK1(2)        --------->YAB1                   <---------ARR11(3)       <---------YAB1                    --------->ARR11(3)    --------->AtLEC2    --------->ZAT14 --->DOF2                               --------->RVE1(1)   ------>ZmHOX2a(2)      <---------ZAT14 --------ZAT18                    ----------->GT1 --------->ANAC58          <---------ANAC58 ------->ZAT18                   ----------->GT1  --------->ANAC46          <---------ANAC58 ----->DOF2        ------->TEIL---------->DOF2    --------->ANAC58        --------->ARR11(3)        -   gagcacttgattataacattgaatcttttgcaaaaaagataaaaatcttttcaagaaactgatccatccaaaatactatcttgtcttcactcttcaaaat  16797100                                                <-----------GT1                                          <----------DOF2                                   --------->GLK1(1)                                  <-----------ARR10                                  ------->TEIL<------------------------ANAC81                                  --------->ARR14(2)                                  <---------ARR11(1)                               --------->ATHB12                                  <---------ARR14(2)                               <--------ATHB1             --------->HSFB2a(2) <---------GLK1(2)                                 --------->YAB1             <---------HSFB2a(2) <---------CCA1(2) <---------CCA1(2)<<<<<<<<<TBF1  <---------ICU4   - <-----------HVH21         <----------DOF2<---------DAG2         <<<<<<<<<TBF1    --------->ICU4    < ----->ZmHOX2a(1)    <----------DOF2   <---------ALFIN1    <---------At4g35610    <---------ATHB12 <-   tcctgtcattactctctcgaaccctttctcttttcgaatctccacttttttttctatcttctgcttcttcttcttctctcttcaatgattccactctcac  16797200                                                                  --------->ANAC46                                                            <---------At4g35610                                                            --------->LBD16                                 ------>ZmHOX2a(2)          --------->At4g35610                                 ===========================HOX2a_HOX2a                                 ===============================HOX2a_HOX2a                                --------->GLK1(1)        ------>ZmHOX2a(1)                                ================================HOX2a_HOX2a                                ============================HOX2a_HOX2a                                <------ZmHOX2a(2)    ------>ZmHOX2a(1)                                <---------GLK1(1)  <---------HSFC1(2)                               <---------ARR11(3)  <---------HSFB2a(1)                       <<<<<<<<                               --------->ARR14(3)  --------->HSFB2a(1)             --------->LBD16                               --------->ARR14(2)  --------->HSFC1(2)             <---------HSFB2a(2)                               <---------ARR14(2) ==============HOX2a_HOX2a       --------->LBD16                               --------->ARR11(3) <------ZmHOX2a(2)               --------->HSFB2a(2)                              <---------GLK1(1)  --------->ARR14(2)              <---------LBD16 -------->ARR11(3)            --------->GLK1(1)  <---------ARR14(2)          <---------GLK1(1) ---------ARR11(3)--------->ANAC58               <---------ARR11(3)          --------->ARR14(2) --------GLK1(2)  --------->ANAC58               --------->ARR11(3)   <---------SPL7--------->LBD16   aaaatctccatgactacaaaacgcatagacagagatctcccatcttccgacgatccttcctccgctaaacgccgtatcgaattccccgaagaaacactcg  16797300                   --------->YAB1                  <---------ATHB12                 --------->ANAC58                 --------->ANAC58                --------->WOX13(1)              <---------RAP2.6(3)              ------>NtERF2              --------->LBD16             --------->RAP2.3(2)             --------->RAP2.6(2)            --------->RAP2.3(1)                            <---------At4g35610           ------>NtERF2                               --------->ANAC46         --------->ATERF1(1)                           <---------ANAC55(2)        <---------At4g35610                            --------->ANAC55(2)        --------->ZAT2                              <---------ARR14(2)                 <---------ALFIN1        --------->At4g35610                     --------->ORA47(2)                  --------->REM1(1)        <---------ZAT2                 ------>ZmHOX2a(1)  ------->TEIL      ----------->HVH21        --------->ABI4(2)      <---------ANAC58 --------->RAP2.3(1)         <---------MYB52(1)        <---------ATERF1(1)    <---------ANAC58 <------NtERF2              --------->LBD16          -    <---------DEAR3(1)        --------->At4g35610   --------->ARR14(2)    <---------ANAC46        ---  --------->MYB52(1)          <---------At4g35610--------->DEAR3(1)      <---------LBD16         ---- <TAC1 --------->ALFIN1    ------>ZmHOX2a(1)  <----------ID1          --------->At4g35610 <----------DOF2   aaaacgacggtgctgccgcaatcaaactccttagcttactcctccaatgcgccgaatacgtagctactgatcatctccgtgaagcttcaacacttttatc  16797400                           <---------ARR14(2)                           --------->ARR14(2)                         <------MYB83                         <---------DEAR3(2)           --------->CCA1(2)          <---------ARR11(3)        --------->LBD16          --------->ARR14(2)      <---------LBD16                                                   <          --------->ARR11(3)    --------->ANAC46                                                    -          <---------ARR14(2)   ------>ZmHOX2a(1)                                                    -       --------->LBD16   <------MYB46(1)                                                           -- <---------ARR11(3)     --------->MYB52(2)     <------NtERF2                                       <- -------->GLK1(1)      --------->SPL7<------NtERF2           ---------->DOF2          --------->At4g35610 ------>LBD16         <---------MYB52(1)     <---------DEAR3(1)       <---------MYB52(2)          <-- ----->ANAC46        <---------SPL7--------->DEAR3(1)       --------->WRKY18(1)       <---------At4g35610   cgaaatctccgagatatgttctccgttcggttcctcgccggagcgagtcgtcgcttacttcgctcaagcgctacaaacgcgcgtgatcagctcttacctc  16797500  Previous    Next  AGI:  At5g41910.1    Description:  RNA polymerase II mediator complex protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26665.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62915.1); contains domain PTHR13345:SF2 (PTHR13345:SF2); contains domain PD331788 (PD331788); contains domain PTHR13345 (PTHR13345) Range:  from: 16795283    to: 16796502    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41920.1    Description:  scarecrow transcription factor family protein. similar to SCR (SCARECROW), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42792.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 16796977    to: 16798473    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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