Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                       <---------YAB1                                           -----                                     --------->YAB1                                             <----                            <---------ANAC58                                                   ------                            <---------ANAC58                                                   <-----                            <---------AtLEC2               --------->MYB52(1)                  <-----       <-------TEIL     <---------ANAC58    <---------AHL20(2)                                 ------  <-----------RAV1(2)   <---------ANAC58    --------->AHL20(2)                              <-------- >ANAC58         ----------->RAV1(2)--------->ICU4      --------->TOE2(3)              --------->ATHB12 >ANAC58    --------->TOE2(3)     ---------->DOF2       --------->TOE1(3)      ---------->DOF2<------ZmHOX2a(1)   gagaccaggtacaatctcaacctgtggattgcatgataaagatgattttaatcggaaaccgtaacgattcaaaattgaaacaaaagtattcattgaggat  16691800                      <-------MYC3                      <-------MYC2                      ------->MYC2                      ------->MYC3                    ------->TEIL ------->YAB1    --------->ANAC58 ---->GLK1(1)    --------->ANAC58 -----GLK1(1)  ------>MYB83--------->HSFB2a(2) --->ARR14(2)  --------->MYB52(1) ----ARR11(3)  ------>MYB46(1)                                             <---------ATHB12<--------- ----ARR14(2) --------->MYB55(1)                 <---------ZAT6           ------>MYB83  <---------ARR11(3) --->ARR11(3)<---------MYB46(2)           --------->AHL20(2)              ------>MYB46(1) ------>ZmHOX2a(2) -TOE2(3)    <---------MYB59           --------->GLK1(1)          --------->YAB1        --------->ARR11(3)   atcaaaattcgataacctaacgcatgtgtctcgaattagagaaatcaaatagtgttttctgggcaaaatcaaaaccaatcgacacaaatcgatcttttgc  16691900                                                                               <---------LBD16                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                           <---------ARR11(3)                                                                           --------->ARR11(3)                                                                           <-----------ARR10                                                                          <---------CCA1(2)                                                                          <---------GLK1(1)                                                                        --------->YAB1                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                   --------->ARR14(2)               ---------->DOF2          --------->TOE2(3)        --------->LBD16 --------->LBD16 --------->AHL20(2)          --------->REM1(2)    --------->ICU4--------->HSFB2a(2) -DOF2     ---------->DOF2 --------->LBD16        <---------YAB1<---------HSFB2a(2)     ------->TEIL   gaaaaaaatactaaaaagaaaggcaaacccgtgtaaacttcatcttaatctcatgagtaagagtttccagataagcatatctccgtgatgaaactttctc  16692000                                            ------->GAMYB                                          -------->P    <---------ALFIN1                         <-----------------------TaNAC69(2)                 <---------WOX13(1)     --------->MYB46(3) --------->DEAR3(1)          <---------HSFB2a(2)               --------->ATHB12   --------->LBD16      --------->MYB46(3)          --------->ARR14(2)              <---------ATHB12  <---------LBD16   --------->ANAC58                 <---------ARR14(2)           --------->AtMYB61   --------->MYB52(1) --------->ANAC58             <------ZmHOX2a(1)           <---------ALFIN1  <------ZmHOX2a(2)   --------->DAG2               ----------->GT1          --------->MYB46(3)<-----------HVH21   ---------->DOF2       --------->MYB52(1)     <-------   cattccattaccaccactgattgaagatgcgatcaccggaaaacaacccaaaaagcaaacaccgtctccatctatcggtaaggagaattcgagagattga  16692100                                                                                               ------                                                                                              *TSS --                                                                                        --------->ATERF1(1)                                                                                      <---------ANAC46                                                                                      <---------DEAR3(1)                                                                                     --------->ATERF1(1)                                                                                     <------NtERF2 <-                                                                                     <---------LBD16                                                                     --------->At5g28300<------NtERF2                                                                   --------->ANAC58 <---------RAP2.3(1)                                                                   --------->ANAC58<---------RAP2.6(2)                                                      --------->ARR14(2)           <---------RAP2.3(2)                                                      <---------ARR14(2)           <---------RRTF1(3)                                                      <---------GLK1(1)           <---------At4g35610                                               <---------At4g35610 --------->ANAC46<---------DEAR3(1)                                               ----------->RAV1(2) --------->O2 <--------P <------ZmHOX2a(1)                                               --------->At4g35610 --------->bZIP60(2)--------->ALFIN1                                     --------------------->WRI1   <---------LBD16 --------->At4g35610 --WOX13(1)      --------->GLK1(2) <---------YAB1     --------->GLK1(1)      <---------TOE2(3)<------   tcacagagtaagacgagagactctttcgattaatgctctcattgttctcatctgagaattcccatggccacggcaaattgtggtagcggcggaggagaaa  16692200                 --------->At4g35610             <---------ANAC58             <---------ANAC46             <---------ANAC55(2)                    <---------MYB46(2)             <---------ANAC58                       --------->DEAR3(1)      <---------ANAC58                              --------->MYB46(3)      <---------ANAC58                             --------->DEAR3(2)    --------->ARR11(3)                      ------>MYB46(1) --->MYB52(1)--------->ANAC55(2)            ------>MYB83      ----------->GT1           ------>MYB46(1) ------->At5g28300     ---------->DOF2    <---------MYB59   <------------CBF            ------>MYB83 ----------HVH21------->TEIL          ---------->DOF2 ------>MYB83                    <---------MYB59 ---ARR14(2)<---------LBD16        <---------ANAC55(2)------>MYB46(1)              <-----------GT1   cggtgagagcttgttgcgcatctcaaaaagaatgaatacataaaccgaactataccgacccaaattgaaatatagaaactgatataaaccgaactatacc  16692300                                                                                               ------                                                                 ------>MYB83                  <-----                                                                 ------>MYB46(1)         <-----------GT1                                                               --------->MYB46(3) <---------AHL20(1)                                                               --------->AtMYB61  <---------AHL20(2)                                                               <---------MYB46(2) --------->AHL20(2)                                                              --------->ANAC46   --------->AHL20(2)                                                      <---------ALFIN1           <---------AHL20(2)                                                    --------->ANAC58        --------->TOE2(3) ------>MYB83                                   ------->TEIL     --------->ANAC58    <---------MYB52(1)    ------>MYB46(1)   gagccaaattggaatttttgaaattggaataaaactgaaccgagccaaatagtctcgcactctcaccaaacccagttatcttattaaattttcaccaaat  16692400                             --------->TOE2(3)                           <---------YAB1                    ------>ZmHOX2a(1)                <---------ARR14(2)                --------->ARR14(2)                           --------->ATHB12               <---------GLK1(1)                        <---------YAB1      --------->YAB1<---------CCA1(2)                 <---------ICU4<---------CCA1(1)      --------->TOE2(3) <----------DOF2              <---------YAB1 <---------RVE1(1) --->ARR14(2)  <---------CCA1(2)                     --------->ICU4<---------ARR11(3)          ------ ----ARR14(2)  --------->GLK1(1)                 <---------MYB52(1)--------->ARR11(3)         <------   ccagtttatcttaatgcatatcctatcttttcattagtccataactaattcgttgattattgttcattagatatttgcagtaatacaaatcccactatga  16692500                                                             <-----------GT1                                                        <---------CCA1(1)                                                        <---------RVE1(1)                                                       <---------AHL20(1)                                                       <---------ARR11(3)                          --            --------->YAB1                             --------->ARR11(3)               <-----------GT1     <---------YAB1                                    --------->AHL20(1)          <---------AHL20(2)   <---------ICU4                                   <---------TOE2(3)             --------->AHL20(1)  --------->ICU4                                   ---------->DOF2 <----------DOF2--------->AHL20(2) --->YAB1 --------->ANAC58                        --------->AHL20(2)              <---------AHL20(1) ---YAB1  --------->ANAC58                        <---------AHL20(2)              <---------AHL20(2)   caacatgatgactcgcataatatgacattcaactattgtgagattacaaaatttaaagatattttacttcttttttttccaaaataaaatttacattcta  16692600                                                                        <-----------HVH21                                                                       --------->bZIP60(1)                                                                       <---------bZIP60(1)                                                                     --------->YAB1               <--            <---------ICU4                                           <---------ICU4               ---           --------->ICU4       --------->YAB1                 --------->YAB1                   -----      ----------->GT1     --------->YAB1                     --------->AHL20(2)          <---------AHL20(2)  --------->AHL20(2)  --------->AHL20(2)         <---------TOE2(3)--------->YAB1        --------->AHL20(2) ------->YAB1     ----------->GT1       --------->TOE2(3)   <---------AHL20(2)      ----------->GT1--   ttgataaaatgtaattagtatggataaattagaatcataaaacattagtttgagatagagatttaaaataatcatgtcacaaaaactagataaaatttca  16692700  Previous    Next  AGI:  At5g41690.1    Description:  RNA binding. similar to polyadenylate-binding protein, putative / PABP, putative [Arabidopsis thaliana] (TAIR:AT1G45100.1); similar to novel protein (zgc:56258) [Danio rerio] (GB:CAK04114.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 16687229    to: 16692194    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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