Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->GLK1(2)                                                        ------->TEIL                                                        <-----------ARR10                                                        <---------ARR11(1)                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                 <-------TEIL                                                --------->GLK1(2)                                                --------->ARR14(1)                                                --------->CCA1(2)                                               <---------ARR14(2)                                               --------->ARR11(1)                                               <---------GLK1(2)                                              <---------HSFC1(2)             --------->CCA1(2)                                              --------->HSFC1(2)            --------->ARR11(1)                                              <---------HSFB2a(1)           <---------ARR11(3)                                              --------->HSFB2a(1)       ---------->DOF2                                    --------->YAB1<---------DEAR3(1) --------->ANAC46<----------ID1                                ---------->DOF2--------->ARR14(2)  --------->ANAC58  --------->ANAC58                      <---------STY1(2)      ----------->ARR10     --------->ANAC58  --------->ANAC58     ---------->DOF2  --------->STY1(2) ---------->DOF2<---------ARR14(1)   --------->ARR11(3)    <--   ccatagagaaagtattcaaaaactagctaatgaaaaaagcataaaagaagattcggcgaatctaagaacacgcgtaaagatatgaagaagccaaaccaga  16686600                                                                                                  <--                                                                         <---------TOE2(3)       ----                       <-------TEIL                         --------->At4g35610                 -----                   --------->MYB59                          --------->ZAT2                <-------TEIL                   <---------TOE2(3)                        <---------ZAT2          ------>ZmHOX2a(2)              --------->ATHB12                            =================================HOX2a_HOX2a            <---------WOX13(1)                            <------ZmHOX2a(1)       --------->ARR14(2)      --------->ARR14(2)  <---------YAB1     ----------->HVH21       --------->CCA1(2)  --------->GLK1(1)      <---------ARR14(2)  --------->ICU4   <------ZmHOX2a(2)<---------At4g35610   <---------ARR14(2) ----ZmHOX2a(1)    <---------TOE1(3)       ======================HOX2a_HOX2a--------->ALFIN1   ------   ggaagaccgattcgattgatttaggttgatgatgaaattggatggatcagacagggctaaggagctggaagagatgaggtttgggatcggagttcatgcc  16686700                                                                             --------->ANAC46   --------->At4g35610                                                     --------->MYB52(1)   <---------At4g35610                                                     <---------DOF5.7(2) ----NtERF2                     ----------->HVH21                        ------>ZmHOX2a(1) -->NtERF2                      ----------->TGA1                        --------->TOE1(3)           < ---->DEAR3(1)      --------->ANAC58                                    --------->TOE2(3)           - --->DEAR3(2)       --------->ANAC58   <----------DOF2<---------ATHB12  <---------ANAC55(2)     <----   gacgaagatgaccagagggatgaagccatagtgagtgacgactttagccttcttcaatgaccaattggtccattccttaacgacatcaaacttggatttg  16686800            <---------HSFC1(2)            <---------ZAT2            --------->ZAT2            --------->HSFC1(2)            --------->At4g35610            --------->HSFB2a(1)            <---------HSFB2a(1) <----------DOF2            <---------At4g35610<---------DAG2         <------ZmHOX2a(1)------>ZmHOX2a(1)         ======================HOX2a_HOX2a  <---------WRKY18(1) ---------At4g35610       <----------DOF2  --------->WRKY38(1)         <---------ATHB12         ----- -------->At4g35610     ------>ZmHOX2a(2)  --------->WRKY12      --------->ANAC46------>ZmHOX2a(2) -------HVH21     <----------DOF2     <----------DOF2  --------->ARR11(3)       <------ZmHOX2a(2)   <   tcatcggaagaggaagctccctttgatcctttgccttttcctttgttgaccttcaacgatattgtagactccattgattccgatctcagagtttctctcg  16686900       --------->GLK1(2)      <---------ARR11(3)      --------->ARR11(3)            ---------->DOF2                                            ------    ----------->ARR10               --------->MYB52(1)                                       ------->GAMYB  --------->LBD16                --------->TOE2(3)                         --------->YAB1    -------- <---------ANAC58                --------->TOE1(3)            --------->ZAT14               --------- <---------ANAC58          --------->LBD16         *TSS  <---------At4g35610--------->ARR11(3) ------ <---------ANAC46      --------->GLK1(2)<------ZmHOX2a(1)--------->At4g35610>>>>>>>>>>GT-1  <-------- ---->ATHB12           --------->ARR14(2)         ---------->DOF2        <---------WOX13(1) --------- ---------LBD16        <---------ARR14(2)   <----------DOF2 --------->At5g28300           <----------   attgcggagattttgtttttgctcgaatccgaaaaccctaaaggacctttacaaaagttagcggtgaagtctctgaatgatatagagggttctaaccgac  16687000                                                 <------------CBF                                               <---------YAB1                                            <---------ARR11(3)                                <---------------AGL15    ---------->DOF2                               <-----------------AGL1----------->GT1                               <-----------------AG  <---------ANAC46 >MYB46(1)                    <-----------GT1 --------->TOE2(3) ->DEAR3(1)                <---------ICU4   --------->GLK1(2)                    <---------DAG2 >DEAR3(2)                ------>ZmHOX2a(1) <-----------ARR10                    <----------DOF2 >MYB83                ---------->ID1       --------->ARR11(3)                <-----------GT1 ----AtMYB77          <-----------GT1       --------->ARR14(2)         <---------AHL20(2)  <--------- >MYB46(3)      <---------TOE2(3)           <---------ARR14(2)  <---------ARR11(3)       <---------At5g28300 -GT1    ---------->DOF2 <---------MYB59   <---------CCA1(2)    --------->ARR11(3)      <-----------GT1   cttctatttttaaaagttaacatttttcctaattacaaatttggcaaatcttattgggtaaaagaagatagttttaaatgttacttttttttactgtggc  16687100                           <-----------HVH21                       <---------LBD16                    <---------HSFC1(2)               --------->YAB1                                       --------->ANAC58         --------      XXXXXXXXXXXXXXXXXXXX>MIR844    <---------YAB1                 --------->ANAC58      <----------   --------->YAB1   --------->HSFC1(2)                            ---------->DOF2--------->ARR11(3)<- --RAV1(1)--------->ARR14(2)--------->WRKY18(1)         <---------TOE2(3)        <---------ARR11(3)<-   ataactcataagaatactcataagcttcgggtcaagcttacgattttgtctatgtacaaaggttatagtaaagccaatgtctaggtcttgagttaccact  16687200                     --------->ANAC58                             <---------TOE1(3)                     --------->ANAC58                             <---------YAB1                     --------->ANAC46                          --------->GLK1(2)                    <-------TEIL                               --------->ICU4                   --------->CCA1(2)                      <---------TOE1(1)    <-----------GT1--------->ARR14(1)                  <---------SPL7 ->ZAT6           --------->ARR14(2)                <---------ANAC58                             <--- -GT1  <----------DOF2                              <------MYB46(1)                             ----- --------DAG2     --------->ARR11(1)                <------MYB83  <---------TOE2(3)         --------- ---------DOF2    <---------ARR14(2)                <---------ANAC58                      <---------ATHB12   acttttttactttggtgaaagatacgaaagactgaatcaagttgagactgtatttggtgtccgagattatggttttgagttttgacaaacaaatcagtta  16687300              --------->ANAC55(1)              --------->ANAC46              --------->ANAC58           <---------ARR14(2)                      --------->YAB1           --------->ARR14(2)                <---------AHL20(2)    --------->ZAT18                         --------->AHL20(2)                      --------->ARR11(3)    <---------ZAT14--------->ANAC58      --------->ATHB12                           <---------ARR11(3)    --------->ZAT14--------->ANAC58     <---------YAB1                            ----------->ARR10 ------YAB1<---------ZAT14              --------->ICU4                    <---------SPL7          --- ---->AHL20(2)--------->ANAC58      --------->ARR11(3)                  <------NtERF2  --------->GLK1(2) -->GT1    --------->ZAT14         <---------At4g35610                <---------DEAR3(1)       <-----   aaatagtatactgtatacggcacataatagtgaaggcagataatgatttaatatcagaacatatggtcttcgtcgtcgtaagagaagataatcttcttac  16687400            ------>ZmHOX2a(1)                                  <---------ANAC58      --------->MYB59                                          <---------ANAC58   --------->ARR14(2)                                          --------->MYB52(2)   <---------ARR14(2)                                 <----------DOF2      --------->AHL20(2) ------>LBD16                <----------TaMYB80 <---------At4g35610 <---------ANAC46            ----- ----At5g28300         <---------ARR11(3)       --------->At4g35610 <---------LBD16        >>>>>>>>>>   cgcagaattcggtcctctcgctcaacatctcatattccttctgtttcttcagaagactttctcgttcgtgcctggaataaaaaaaaaaaaaaaacccatt  16687500  Previous    Next  AGI:  At5g41680.1    Description:  protein kinase family protein. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G64210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65842.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 16685113    to: 16686717    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g41685.1    Description:  mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1). Identical to Mitochondrial import receptor subunit TOM7-1 (TOM7-1) [Arabidopsis Thaliana] (GB:Q9ASY8); similar to TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G64220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41705.1); contains InterPro domain Mitochondrial import translocase, subunit Tom7; (InterPro:IPR012621) Range:  from: 16686377    to: 16686951    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41690.1    Description:  RNA binding. similar to polyadenylate-binding protein, putative / PABP, putative [Arabidopsis thaliana] (TAIR:AT1G45100.1); similar to novel protein (zgc:56258) [Danio rerio] (GB:CAK04114.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 16687229    to: 16692194    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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