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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
At4g35610
<------
NtERF2
--------->
ANAC58
--------->
ANAC58
--------->
GLK1(2)
--------->
ANAC46
<---------
AHL20(2)
<---------
ARR11(3)
---------->
DOF2
--------->
AHL20(2)
--------->
ARR11(3)
----
ARR11(3)
<---------
ARR11(3)
<---------
AHL20(2)
<----------
DOF2
--->
ARR11(3)
<---------
AHL20(1)
----------->
GT1
--------->
YAB1
<--
--->
ARR14(2)
--------->
AHL20(1)
--------->
ICU4
--------->
ALFIN1
------
---
CCA1(2)
<---------
At4g35610
----------->
HVH21
<-----------
RAV1(2)
<-----
ctccaaaacgcagcgtcttggttaatttttgagatgtcaatatatataatctgtgaccttgtaatgtttaatcaacaggtgtatgatcatctttcatcta
16653000
--------->
YAB1
<---------
YAB1
<---------
YAB1
<---------
ARR14(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<---------
GLK1(2)
<---------
AHL20(2)
--------->
ICU4
----
ZmHOX2a(1)
--------->
ARR14(2)
--------->
AHL20(2)
--------->
YAB1
--->
HSFB2a(2)
<---------
ARR11(3)
<---------
MYB59
<-----------
GT1
----------->
GT1
-
----
HSFB2a(2)
--------->
YAB1
<-----------
GT1
<---------
AHL20(2)
<------
ZmHOX2a(2)
<--
ggagcattttcattctatcaacatattctcataacaattttactatgcctaacaattttttatttttactatgaaatggatcagtaataaatgggcctta
16653100
<---------
MYB52(2)
--------->
At4g35610
<---------
At4g35610
----------->
RAV1(1)
------>
NtERF2
<---------
DDF1
----------->
HVH21
--------->
RAP2.6(2)
<---------
ETT(1)
--------->
DEAR3(1)
--------->
RRTF1(2)
--------->
RRTF1(3)
--------->
RAP2.3(2)
--------->
At1g77200
--------->
DEAR4(1)
--------->
DREB2C(2)
--------->
RAP2.3(3)
--------->
RAP2.3(1)
--------->
ORA47(2)
--------->
ERF1
<---------
ATERF1(1)
<---------------
AGL15
--------->
LBD16
--------------->
AGL15
------>
NtERF2
=================================================================
MADS_MADS
----------------->
AGL3
--------->
At4g35610
----------->
TGA1
<
<-----------------
AGL3
--------->
ANAC46
------->
GAMYB
-
----------------->
AGL2
--------->
MYB46(3)
--------->
MYB52(1)
<
<-----------------
AGL2
<---------
ARR14(2)
----------->
HVH21
--------
--------->
MYB46(3)
--------->
ARR14(2)
<---------
MYB52(2)
--------->
KAN4(2)
------>
MYB83
------>
ZmHOX2a(1)
----------------->
AGL1
--------->
KAN4(1)
------>
MYB46(1)
<------
ZmHOX2a(2)
----------------->
AGL3
<---------
KAN4(1)
<---------
ZAT14
--------->
ARR14(2)
--------->
HSFB2a(1)
<---------
KAN4(2)
--------->
ZAT14
<---------
ARR14(2)
<---------
TOE1(3)
---------->
TaMYB80
-------------->
AtSPL8
<---------
PCF2
------>
ZmHOX2a(2)
<---------
TOE2(3)
<---------
LBD16
<-----
---------
GT1
----------------->
AGL1
<---------
ARR11(3)
--------->
MYB52(1)
--------->
DOF5.7(2)
------
atactgtaccaacaatcccataaatgggcccaatgctggatcctatccgccgacatctaacgttccactaacggagacgttatcgggaatattcacatta
16653200
-------->
P
------>
MYB83
------>
MYB46(1)
<---------
MYB46(2)
<---------
MYB111(1)
<---------
MYB59
--------->
ANAC55(2)
<-----------------------
TaNAC69(2)
--------->
At5g28300
<-------
GAMYB
<---------
DEAR3(2)
<---------
MYB46(3)
<---------
MYB46(3)
<---------
MYB52(1)
<---------
DEAR3(1)
<-------
GAMYB
<---------
ORA47(1)
------->
GAMYB
--------->
ANAC46
------------>
AtMYB77
--------->
MYB46(3)
--------->
AHL20(1)
----------->
HVH21
-----------
GT1
--------->
ANAC58
<---------
AHL20(2)
--------->
WRKY12
-------->
MYB52(1)
------>
NtERF2
<---------
AHL20(2)
--------->
ALFIN1
---------
DOF5.7(2)
--------->
ARR14(2)
--------->
AHL20(2)
--------->
LBD16
<-------
->
TOE2(3)
--------->
MYB52(2)
--------->
At4g35610
--------->
DEAR3(1)
--------
----
AHL20(2)
--------->
ANAC58
<---------
At4g35610
<---------
ANAC46
------>
NtERF2
--->
AHL20(2)
<---------
ALFIN1
--------->
REM1(1)
<-----------
GT1
<---------
MYB52(1)
<--------
attaacgaccgttagttccacgccaaatatgttacatctgctacaaaataaatagtttgattttccaccgtggacggttacctactcgaggcccagaccc
16653300
-
*
TSS
<-----------
HVH21
-----
<---------
AHL20(2)
--------->
ANAC46
<-----
--------->
MYB52(1)
--------->
AHL20(2)
<----------
DOF2
--------
--
ARR14(2)
----------->
GT1
--------->
ANAC46
<---------
ALFIN1
->
ARR14(2)
<---------
AHL20(2)
--------->
ALFIN1
--------->
ANAC58
<---------
ALFIN1
-
-
ALFIN1
--------->
AHL20(2)
--------->
ALFIN1
--------->
ANAC58
------>
ZmHOX2a(1)
<
gaatcaaacggactggattaaatgttttaaatcaaggggtgggattaaatctgaagc
acacgcttttattcgtcacagtctcctcccacactcttcaatc
16653400
<---------
ARR11(3)
<---------
ARR14(2)
<---------
TOE2(3)
<---------
TOE2(2)
===============
HOX2a_HOX2a
--------->
DOF2
<---------
TOE1(2)
<------
ZmHOX2a(1)
---->
YAB1
<---------
TOE1(3)
<---------
HSFB2a(2)
<-------
PIF5
<--
----
ATHB12
--------->
HSFB2a(2)
------->
PIF5
<---------
HSFB2a(2)
->
WOX13(1)
<---------
LBD16
--------->
ANAC58
--------->
HSFB2a(2)
-------->
ZAT14
<<<<<<<<<
TBF1
--------->
ANAC58
------>
ZmHOX2a(2)
---------
ZAT14
<-----------
GT1
--------->
AtMYB61
--------->
ARR11(3)
agtaaagagttttaggtttttttttcttcttctcggaggtttgtagaatcaacaaaa
atggtggaagaccacaagcacgaggaatcgatcttggagaaga
16653500
<-----------
HVH21
<-------
TEIL
----------->
HVH21
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ANAC58
--------->
ARR11(3)
--------->
ANAC58
--------->
ARR14(2)
------>
NtERF2
<---------
ARR14(2)
--------->
DEAR3(1)
<------
NtERF2
---
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ATERF1(1)
----------->
ARR10
--------->
GLK1(2)
--------->
GLK1(1)
<---------
DEAR3(1)
<--
-------
MYB46(3)
--------->
At5g28300
--------->
ARR14(2)
--------->
REM1(1)
------>
ZmHOX2a(1)
ttgttgagaagatccatggccacggtgactcgtcttctctgtccgattccgacgacgataagaaatctacatcgtcttcgtcgtcgtccttcaagtcaaa
16653600
<---------
HSFB2a(2)
--------->
HSFB2a(2)
<---------
LBD16
<---------
DAG2
<----------
DOF2
------>
MYB46(1)
<---------
ANAC46
------>
MYB83
<---------
MYB46(3)
<---------
MYB59
--------->
MYB55(2)
--------->
ZAT6
--------->
DEAR3(2)
<---------
AtMYB61
--------->
ARR11(3)
<---------
At5g28300
<---------
DEAR3(1)
------>
ZmHOX2a(2)
=
<-----------
GT1
--------->
ALFIN1
<---------
AGP1
-
------>
ARR11(3)
<---------
HSFB2a(2)
------->
TEIL
<---------
YAB1
-------
ARR11(3)
----------->
GT1
<---------
GLK1(2)
<---------
ARR11(3)
<----------
DOF2
<---
gatttaccgacttttcggaagggagaaacctgttcacaaggttctcggtggtggaaaac
gtatggatctatctctatttcttcactttgaactctgattt
16653700
<----------
DOF2
------->
TEIL
<---------
ANAC58
<---------
CCA1(2)
<---------------
AGL15
<---------
ANAC58
================================================================
MADS_MADS
<---------
ANAC58
-------------->
AGL15
--------------->
AGL15
<---------
ANAC46
--------
GT1
<-----------
RAV1(1)
<---------
ANAC58
<---
tactcgattttgtatcttacatagtgattttgctcgatctagtgaatgttgctctaatttgaagctaaaattgagtgtatttgagtgcttaattgtctgc
16653800
<---------
AHL20(1)
<---------
At4g35610
<---------
At4g35610
--------->
At4g35610
<---------
ZAT2
<---------
ANAC58
<---------
AtLEC2
--------->
ARR11(3)
<---------
ANAC58
--------->
ARR11(3)
<---------
CCA1(2)
--------->
ATHB12
--------->
At4g35610
--------->
ZAT18
<-------
TEIL
------->
TEIL
<---------
ZAT18
--------->
ARR14(2)
<---------
ANAC46
<-----
---------->
DOF2
----------->
GT1
------->
TEIL
<---------
ANAC58
<---------
ARR11(3)
-------
DOF2
----------->
GT1
<---------
ARR14(2)
<---------
ANAC58
<----------
DOF2
tttgctcgaaagtacgcttaaatcttgtgaaatactcagaaactatgttgaatctggattcattgtttgcatgtag
ctgctgatatattcctttggagga
16653900
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AGI:
At5g41600.1
Description:
BTI3 (VIRB2-INTERACTING PROTEIN 3). similar to reticulon family protein (RTNLB3) [Arabidopsis thaliana] (TAIR:AT1G64090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65886.1); contains InterPro domain Reticulon; (InterPro:IPR003388)
Range:
from: 16653358
to: 16654921
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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