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Intron region
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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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        <---------At4g35610
        <------NtERF2
    --------->ANAC58
    --------->ANAC58                        --------->GLK1(2)
    --------->ANAC46                      <---------AHL20(2)                     <---------ARR11(3)
  ---------->DOF2                     --------->AHL20(2)                         --------->ARR11(3)
----ARR11(3)                         <---------ARR11(3)         <---------AHL20(2)     <----------DOF2
--->ARR11(3)                         <---------AHL20(1)     ----------->GT1     --------->YAB1   <--
--->ARR14(2)                         --------->AHL20(1)     --------->ICU4 --------->ALFIN1   ------
---CCA1(2)                  <---------At4g35610  ----------->HVH21     <-----------RAV1(2)    <-----
 
ctccaaaacgcagcgtcttggttaatttttgagatgtcaatatatataatctgtgaccttgtaatgtttaatcaacaggtgtatgatcatctttcatcta  16653000
                         --------->YAB1
                        <---------YAB1                    <---------YAB1
                    <---------ARR14(2)                  <---------AHL20(2)          <---------AHL20(2)
     <---------YAB1 <---------GLK1(2)                  <---------AHL20(2)          --------->ICU4
----ZmHOX2a(1)      --------->ARR14(2)              --------->AHL20(2)           --------->YAB1
--->HSFB2a(2)     <---------ARR11(3)        <---------MYB59   <-----------GT1 ----------->GT1      -
----HSFB2a(2) --------->YAB1        <-----------GT1 <---------AHL20(2)      <------ZmHOX2a(2)    <--
 
ggagcattttcattctatcaacatattctcataacaattttactatgcctaacaattttttatttttactatgaaatggatcagtaataaatgggcctta  16653100
                                                    <---------MYB52(2)
                                                   --------->At4g35610
                                                   <---------At4g35610
                                               ----------->RAV1(1)
                                               ------>NtERF2
                                               <---------DDF1
                                              ----------->HVH21
                                              --------->RAP2.6(2)
                                              <---------ETT(1)
                                              --------->DEAR3(1)
                                              --------->RRTF1(2)
                                              --------->RRTF1(3)
                                              --------->RAP2.3(2)
                                              --------->At1g77200
                                              --------->DEAR4(1)
                                              --------->DREB2C(2)
                                              --------->RAP2.3(3)
                                             --------->RAP2.3(1)
                                             --------->ORA47(2)
                                             --------->ERF1
                                            <---------ATERF1(1)
              <---------------AGL15         --------->LBD16
              --------------->AGL15         ------>NtERF2
             =================================================================MADS_MADS
             ----------------->AGL3         --------->At4g35610       ----------->TGA1             <
             <-----------------AGL3        --------->ANAC46         ------->GAMYB                  -
             ----------------->AGL2       --------->MYB46(3)     --------->MYB52(1)                <
             <-----------------AGL2     <---------ARR14(2)      ----------->HVH21           --------
        --------->MYB46(3)              --------->ARR14(2)     <---------MYB52(2)     --------->KAN4(2)
       ------>MYB83                    ------>ZmHOX2a(1)    ----------------->AGL1   --------->KAN4(1)
       ------>MYB46(1)              <------ZmHOX2a(2)       ----------------->AGL3   <---------KAN4(1)
 <---------ZAT14                   --------->ARR14(2)   --------->HSFB2a(1)         <---------KAN4(2)
 --------->ZAT14                   <---------ARR14(2)  <---------TOE1(3)            ---------->TaMYB80
-------------->AtSPL8  <---------PCF2------>ZmHOX2a(2) <---------TOE2(3)       <---------LBD16<-----
---------GT1 ----------------->AGL1<---------ARR11(3) --------->MYB52(1)   --------->DOF5.7(2)------
 
atactgtaccaacaatcccataaatgggcccaatgctggatcctatccgccgacatctaacgttccactaacggagacgttatcgggaatattcacatta  16653200
                                                                               -------->P
                                                                               ------>MYB83
                                                                               ------>MYB46(1)
                                                                             <---------MYB46(2)
                                                                             <---------MYB111(1)
                                                                             <---------MYB59
                                                                            --------->ANAC55(2)
                                                                           <-----------------------TaNAC69(2)
                                                                        --------->At5g28300
                                                                        <-------GAMYB
                                                                       <---------DEAR3(2)
         <---------MYB46(3)                                            <---------MYB46(3)
       <---------MYB52(1)                                             <---------DEAR3(1)
      <-------GAMYB                                                  <---------ORA47(1)
  ------->GAMYB --------->ANAC46                                    ------------>AtMYB77
 --------->MYB46(3)     --------->AHL20(1)                         ----------->HVH21
-----------GT1  --------->ANAC58             <---------AHL20(2)    --------->WRKY12
-------->MYB52(1)------>NtERF2              <---------AHL20(2)    --------->ALFIN1
---------DOF5.7(2)    --------->ARR14(2)    --------->AHL20(2)   --------->LBD16            <-------
->TOE2(3)--------->MYB52(2)        --------->At4g35610          --------->DEAR3(1)          --------
----AHL20(2)    --------->ANAC58<---------At4g35610             <---------ANAC46      ------>NtERF2
--->AHL20(2)  <---------ALFIN1--------->REM1(1)           <-----------GT1<---------MYB52(1)<--------
 
attaacgaccgttagttccacgccaaatatgttacatctgctacaaaataaatagtttgattttccaccgtggacggttacctactcgaggcccagaccc  16653300
                                                                                                   -
                                                         *TSS      <-----------HVH21           -----
                                          <---------AHL20(2)      --------->ANAC46            <-----
  --------->MYB52(1)                     --------->AHL20(2)<----------DOF2                  --------
--ARR14(2)                            ----------->GT1   --------->ANAC46            <---------ALFIN1
->ARR14(2)     <---------AHL20(2)  --------->ALFIN1     --------->ANAC58          <---------ALFIN1 -
-ALFIN1       --------->AHL20(2) --------->ALFIN1       --------->ANAC58       ------>ZmHOX2a(1)   <
 
gaatcaaacggactggattaaatgttttaaatcaaggggtgggattaaatctgaagcacacgcttttattcgtcacagtctcctcccacactcttcaatc  16653400
                                                                                   <---------ARR11(3)
                                                                              <---------ARR14(2)
         <---------TOE2(3)      <---------TOE2(2)                            ===============HOX2a_HOX2a
--------->DOF2                  <---------TOE1(2)                            <------ZmHOX2a(1)
---->YAB1<---------TOE1(3)  <---------HSFB2a(2)                           <-------PIF5           <--
----ATHB12                  --------->HSFB2a(2)                           ------->PIF5   <---------HSFB2a(2)
->WOX13(1)                  <---------LBD16                          --------->ANAC58    --------->HSFB2a(2)
-------->ZAT14         <<<<<<<<<TBF1                                 --------->ANAC58------>ZmHOX2a(2)
---------ZAT14     <-----------GT1                               --------->AtMYB61 --------->ARR11(3)
 
agtaaagagttttaggtttttttttcttcttctcggaggtttgtagaatcaacaaaaatggtggaagaccacaagcacgaggaatcgatcttggagaaga  16653500
                    <-----------HVH21
         <-------TEIL----------->HVH21
        <------ZmHOX2a(2)
        --------->CCA1(2)                               --------->ANAC58
       --------->ARR11(3)                               --------->ANAC58
       --------->ARR14(2)                        ------>NtERF2
       <---------ARR14(2)                       --------->DEAR3(1)             <------NtERF2     ---
       <---------ARR11(3)                 <---------ARR14(2)                   --------->ATERF1(1)
     ----------->ARR10                    --------->GLK1(2)--------->GLK1(1) <---------DEAR3(1)  <--
-------MYB46(3)     --------->At5g28300   --------->ARR14(2)     --------->REM1(1)   ------>ZmHOX2a(1)
 
ttgttgagaagatccatggccacggtgactcgtcttctctgtccgattccgacgacgataagaaatctacatcgtcttcgtcgtcgtccttcaagtcaaa  16653600
           <---------HSFB2a(2)
           --------->HSFB2a(2)
          <---------LBD16
       <---------DAG2
       <----------DOF2
     ------>MYB46(1)                           <---------ANAC46
     ------>MYB83                            <---------MYB46(3)
   <---------MYB59                           --------->MYB55(2)    --------->ZAT6
  --------->DEAR3(2)                        <---------AtMYB61--------->ARR11(3)
 <---------At5g28300                        <---------DEAR3(1) ------>ZmHOX2a(2)                   =
<-----------GT1                             --------->ALFIN1 <---------AGP1                        -
------>ARR11(3)                         <---------HSFB2a(2)  ------->TEIL                 <---------YAB1
-------ARR11(3)  ----------->GT1    <---------GLK1(2)        <---------ARR11(3)  <----------DOF2<---
 
gatttaccgacttttcggaagggagaaacctgttcacaaggttctcggtggtggaaaacgtatggatctatctctatttcttcactttgaactctgattt  16653700
                                                                                    <----------DOF2
         ------->TEIL                                                          <---------ANAC58
        <---------CCA1(2)                       <---------------AGL15<---------ANAC58
================================================================MADS_MADS      <---------ANAC58
-------------->AGL15                            --------------->AGL15<---------ANAC46
--------GT1                               <-----------RAV1(1)        <---------ANAC58           <---
 
tactcgattttgtatcttacatagtgattttgctcgatctagtgaatgttgctctaatttgaagctaaaattgagtgtatttgagtgcttaattgtctgc  16653800
                                                                                <---------AHL20(1)
                                                                          <---------At4g35610
                                                                       <---------At4g35610
                                                                       --------->At4g35610
                                                                       <---------ZAT2
                                                                 <---------ANAC58
                                                                 <---------AtLEC2
                 --------->ARR11(3)                          <---------ANAC58   --------->ARR11(3)
                <---------CCA1(2)                       --------->ATHB12  --------->At4g35610
         --------->ZAT18                               <-------TEIL   ------->TEIL
         <---------ZAT18                       --------->ARR14(2)<---------ANAC46             <-----
    ---------->DOF2  ----------->GT1           ------->TEIL  <---------ANAC58   <---------ARR11(3)
-------DOF2----------->GT1                     <---------ARR14(2)<---------ANAC58      <----------DOF2
 
tttgctcgaaagtacgcttaaatcttgtgaaatactcagaaactatgttgaatctggattcattgtttgcatgtagctgctgatatattcctttggagga  16653900
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AGI:  At5g41600.1   
Description:  BTI3 (VIRB2-INTERACTING PROTEIN 3). similar to reticulon family protein (RTNLB3) [Arabidopsis thaliana] (TAIR:AT1G64090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65886.1); contains InterPro domain Reticulon; (InterPro:IPR003388)
Range:  from: 16653358    to: 16654921    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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