Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->AHL20(2)                              <---------TOE2(3)                            <---------AHL20(2)                            --------->AHL20(2)                           <---------AHL20(2)                           --------->AHL20(2)                        <---------AHL20(1)                        --------->AHL20(2)                        <---------AHL20(2)                                  --------->GLK1(1)                        --------->AHL20(1)                             <---------ANAC46           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <xxxxxx      --------->YAB1   --------->AHL20(2)    --------->ATHB12        <---------ZAT14          <xxxxxx     <---------YAB1--------->AHL20(1)    --------->MYB52(1)          --------->ZAT14 <-----------GT1 --------YAB1      <---------AHL20(1)    <-----------GT1        <---------YAB1  <----------DOF2 ----- ----AHL20(2)     --------->YAB1    <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxx   tatgagtatcataagcccaaaaatattaaattaatgaataaaataactgatttgggtttaagtagtatcactggagtgatttctttgataccagtctctg  16567900              --------->ATHB12              --------->YAB1         <-------GAMYB        <------NtERF2       --------->LBD16       <---------MYB46(3)      <---------ANAC58      <---------ANAC58      <---------ANAC46     <------NtERF2   --------->ALFIN1 <---------ANAC46                                                                      <----------DOF2 <---------ANAC58                                                                   ------->TEIL <---------O2--------->ICU4                                                      --------->ANAC46 <---------bZIP60(2)                                                             --------->ANAC58 <---------ANAC58 --------->MYB52(2)                                     <---------LBD16 xxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------AHL20(2)      --------->ANAC58 xxxxxxxxxxxxxxxxxsmallRNA(fl3)                         --------->AHL20(2) <------NtERF2 ---->YAB1   <---------YAB1                 ---------->DOF2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(i)                   <---------ANAC46 <---------AHL20(2)<---------HSFB2a(2)    <---   ataacgtggcgggttatgattagttgggaaaacatgtttttgtgtgaaaagagagaaattttttttttcgattagtcgggaaaacgcatcttttcgattt  16568000                                                                                                   <-                 --------->YAB1                                                                    --                 -------->HAHB4                                  <---------YAB1                   ---                <---------YAB1                                 --------->YAB1                   <----               <---------TOE2(3)                              <---------YAB1                   <-----              --------->YAB1                                 --------->AHL20(2)               -------             <---------AHL20(2)                            --------->ICU4                     <------    <---------AHL20(2)                                  <---------YAB1                     --------->TOE2(3)   --------->AHL20(2)                                  <-----------GT1                    <---------ICU4   <---------AHL20(1)                                 --------->YAB1                  --------->AHL20(2)   <---------AHL20(2)              <---------LBD16   <---------YAB1               --------->AHL20(2) --------GT1<---------AHL20(2)   <-----------GT1  --------->AHL20(2)---------->DOF2--------->AHL20(2)   tgcaattttttttttttaatgatactaatacgatttcaccggtggaaacagatttattatcaatattataaaaagtttcaaacaataaataaacattaaa  16568100               <---------YAB1         <---------AHL20(2)         <---------AHL20(1)         --------->AHL20(1)   --------->YAB1   ----------->GT1                            <---------AtLEC2 --------AHL20(2)                     ------>MYB46(1) ------->AHL20(2)                     ------>MYB83                                          --------- ------>AHL20(2)<---------AHL20(2)  <---------MYB111(1)                                     <-------- -----------AGL15  <---------------AtSPL8    <-------TEIL    <----------DOF2         ---------->ID1 ----YAB1--------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)              ------>ZmHOX2a(1) -->AHL20(2)<---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---AHL20(2)<---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ZmHOX2a(1)<----------DOF2   attaatagtaaaatattattaatggtactctatgagtaccaactatgtgcatgctctcatgcgctttccttcctcatcctatggtttgtctttcatctcc  16568200                    --------->TOE2(3)                 --------->YAB1                                           --------->TOE2(3)                --------->KAN4(1)                                      <---------ALFIN1                <---------KAN4(1)                             --------->YAB1  ---------->DOF2 >At4g35610    <---------KAN4(2)      ---------->DOF2--------->O2      ----------->RAV1(1) -At4g35610   --------->YAB1   ---------->DOF2    ---------->CDC5---------->DOF2           ----------   cattttgcatatgtaagaataatcttagaggctaaaagaaaaaagaatgggctcaacgtgagaataagaaagcccacattaaaagaggtctattaaagcc  16568300                                                                                                 ----                                                                                                 ----                                                                    -------->HAHB4              -----                                                                    --------->ATHB12           <-----                                                                    <---------ICU4           <-------                     ---------->ID1                                 --------->YAB1          ---------                  --------------->AtSPL8                           --------->ICU4           ---------                 <-----------TBP                                   <---------ATHB12         ---------               <---------AHL20(2)                                  <---------YAB1           ---------               --------->AHL20(2)          <-----------GT1        <---------TOE2(3)         <--------              <---------AHL20(2)------->TEIL   *TSS              --------->YAB1       --------->ANAC46          <---------MYB52(1)   <---------CCA1(2)          ----------->HVH21       --------->GLK1(1)        ----------->GT1   <----------DOF2<----------DOF2<---------ANAC58          <---------GLK1(1) >DOF2 ------>ZmHOX2a(2) <---------DAG2  <---------DAG2 <---------ANAC58 <-----------GT1 ------->TEIL   catatttgatccgttatttatttgtagccttttgaatcttctactttacatttcccttccttgacattaatgattaaaccagtgatacccgaacccgaca  16568400                                                                              <-------GAMYB                             <---------At4g35610                             <---------DEAR3(2)                             <---------ZAT2                                  <---------MYB46(3)                             --------->ZAT2                                 <---------DEAR3(1)                             --------->At4g35610                           --------->DEAR4(2)                            ------->TEIL                                   <------NtERF2                         --------->ANAC58                                  --------->ATERF1(1)                         --------->ANAC58                                 <---------RAP2.6(1)                       <---------ATERF1(1)                                ------>NtERF2                       ------>NtERF2                                      <---------ATERF1(1)                      ----------->HVH21                                   <---------RRTF1(1)                     --------->ATERF1(1)                                  <---------RAP2.3(1) <---------ARR14(2)  <------NtERF2                                        <---------ERF1 --------->ARR14(2) --------->LBD16                                       ------------>AtMYB77 --------->GLK1(2)  <---------ATERF1(1)                                  <---------DEAR3(1) ----->ANAC58       ------>NtERF2                                        --------->DEAR3(1) ----->ANAC58      <---------ANAC46                                     --------->RAP2.3(1) ->NtERF2          --------->DEAR3(1)                                   --------->ATERF1(1) ----ALFIN1       <---------LBD16                                     --------->ANAC46 ----HVH21        --------->ATERF1(1)              <----------DOF2   <---------LBD16 >ANAC58         ------>NtERF2           --------->LBD16             <---------At5g28300 >ANAC58        --------->ANAC46         ------>NtERF2              <-----------GT1 -->HVH21    <---------ARR14(2)         --------->ANAC46   --------->At5g28300<---------MYB52(1) >ANAC46     --------->ARR14(2)         --------->DEAR3(1)----------->GT1<---------RAP2.3(2)   ------ -ETT(1)     --------->GLK1(2)         --------->SPL7     ------->GAMYB<---------ATERF1(1) <---------   ccgaatccgattcaaaatccgccggggacgcagctactccctccgccaaatagctttcaacggtaaattttcacggcgccggttgtcttccttctttgtt  16568500                                        --------->ANAC58                                        --------->ANAC46                       --------->TOE2(3)--------->ANAC58                         --------->At4g35610      <---------ARR14(2)             <-------TEIL                                <---------At4g35610      --------->ARR14(2)            --------->CCA1(2)                 ----------->GT1   ------>ZmHOX2a(2)     <------ZmHOX2a(1) <---------------AGL15            <------ZmHOX2a(2)        <---------ZAT2  <---------LBD16--------->YAB1    --------->ARR14(2)  <---------ARR11(3)        --------->ZAT2 ---->ID1      <---------WOX13(1)  <---------ARR14(2)  --------->ARR11(3)     <---------At4g35610 -DOF2<---------GLK1(2)--------------->AGL15    ---------->DOF2    --------->MYB52(1) <---------ARR11(3)   cttctcaggaatcgctaattgataacttcaattggaagatacaagacaaaaaaagaagatcaatatgggaaacggtattaagcagctcgatcttactgat  16568600                                                             ---------->DOF2                                                           ----------->HVH21                                                         --------->At4g35610                                                   <---------MYB46(3)                                                  <---------MYB52(1)       --------->MYB52(1)                                                 <-------GAMYB             ------>MYB83                                                <-----------RAV1(1)      <---------MYB59            <---------ANAC58                    ===================RAV --------->ARR11(3)            <---------ANAC58                 <---------ARR14(2)        <---------ARR11(3)          --------->ARR11(3)      <---------ARR14(2)     <---------At4g35610  <---------ANAC58             ----------------->AGL1  <-----------RAV1(2) ------>MYB46(1)       <---  <---------ANAC58     ---------->DOF2       --------->ARR14(2)    <------ZmHOX2a(1)        <--------   ttttgcttagtttatcttgccaaacaaaagtatgccaatactgtgaagttctgttgttcaggtgaaagaggaagacctaacaagaagatgaagtatggtg  16568700                                                                --------->MYB46(2)                <--                                                                <---------MYB46(3)             <-----                                                                --------->MYB111(2)            <-----    <-------TEIL                  <---------AHL20(2)            --------->MYB111(1)        <--------- <---------HSFC1(2)              <---------AHL20(2)            <--------P                 <---------CCA1(2) --------->HSFB2a(1)          --------->AHL20(2)          <---------At4g35610         <-----------HVH21 --------->HSFC1(2)      <------ZmHOX2a(2)    <---------ICU4 ----------->GT1         <---------ZAT6 <---------HSFB2a(1)    --------->AGP1<---------AHL20(2)<-----------RAV1(2)    <---------------AtSPL8 ---NtERF2  <---------GLK1(2) <---------AHL20(2)  <---------ZAT18              <---------------AtSPL3 -AtMYB61 <---------YAB1<---------ARR11(3) --------->WOX13(1)------------>MYB.PH3(2) ----------->GT1   gcaaggttcgtcttgattcttctccagatcaattttttattttatcaattagggctcttcagatggtagttagtgagtgtaattgtactgtcaaatctca  16568800  Previous    Next  AGI:  At5g41370.1    Description:  XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP-dependent helicase. Identical to DNA repair helicase XPB1 (XPB1) [Arabidopsis Thaliana] (GB:Q38861;GB:O04171;GB:Q6JA92;GB:Q9FN63); similar to XPB2 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G41360.1); similar to hypothetical protein OsJ_002992 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13167.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65934.1); similar to hypothetical protein OsI_003293 [Oryza sativa (indica cultivar-group)] (GB:EAY75446.1); contains I Range:  from: 16568347    to: 16573231    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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