Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------ANAC46                                                 --------->ABI4(2)         <---------ICU4                                                 --------->ZAT2--------->ZAT14                                                 --------->ZAT14        --------->YAB1                                                 <---------ZAT2<---------ZAT18                                                 <---------ZAT14   <----------DOF2 <----------DOF2                             <---------DEAR3(1)--------->SPL7 ------->HSFC1(2)                           <---------LBD16    --------->ZAT18 --------HSFC1(2)                      <---------DAG2       <---------ANAC58 --ANAC46                    <---------At4g35610--------->ALFIN1 --------->ZAT18      ------>ZmHOX2a(1) -LBD16               <----------DOF2  <----------DOF2      <---------ANAC58     <----------DOF2    *TSS   aagctttttttgttttgtcttcgtctttctctgcttctgtgctttttgcggtgctgtgtttatcgtgcgctctatcaaaatgactttcctaagaaattac  16561200                                       <---------AHL20(2)        <---------AHL20(2)                                  <---------MYB59               <---------AHL20(2)                                 ----------->RAV1(2)         <---------ICU4         <---------AHL20(2)                                 --------->ANAC55(2)         --------->AHL20(2)     --------->AHL20(2)                                -------->P                   <--------HAHB4      --------->AHL20(1)                             <---------ANAC58                -------->ATHB1     <---------ICU4                             <---------ANAC58       <---------ICU4    <---------At4g35610   <--------                           <---------AHL20(2)     --------->TOE2(3)   --------->At4g35610  <---------                           <-----------GT1  --------->AHL20(2)  --------->AHL20(2)  <---------AHL20(1)                       <---------YAB1  --------->AHL20(2)   <---------ATHB51    --------->ATHB51                      <---------AHL20(2)    <---------AHL20(2) <---------YAB1   --------->AHL20(2)                      --------->AHL20(1)   <---------AHL20(2)--------->ATHB51   <---------AHL20(2)                      <---------AHL20(1)   --------->AHL20(2)--------->YAB1    --------->ICU4                   --------->AHL20(2) <---------WOX13(1)    --------->ICU4  <---------AHL20(2)    ---              ------------>CBF <-----------GT1  <-------TEIL<---------YAB1  --------->AHL20(2)  <----     <----------DOF2<---------YAB1--------------->AGL15 ------------>CBF   <---------WOX13(1)  <-----   aaagactctttttgggctcaatattatatttacttacctgatttattaaattcattaatacaattattaattagctgattaattattttattttttccgt  16561300                                                                                         <-----------                                                            --------->WRKY38(1)          ------------                                  <---------MYB59           --------->ETT(2)       --------------->AtSPL8                                 --------->ANAC55(2)        <---------ETT(2)       <---------------AtSPL8                                 <---------ANAC55(2)     --------->ALFIN1  <---------AHL20(2)                               --------->AHL20(2)    ---------->DOF2       --------->AHL20(2)     ------->TEIL              <-----------GT1  <---------At4g35610       <---------YAB1------------- ---GT1                --------->YAB1           --------->At4g35610     --------->AHL20(2)      ----- --GT1                 <---------ICU4       --------->GLK1(2)           --------->YAB1  ------------- --------->CBF        --------->ICU4--------->MYB52(1)--------->DAG2--------->AHL20(2)  ============= -----MYB52(1)        <---------ATHB12      <---------ARR14(2)      <---------AHL20(2)  ------------- --GAMYB              <---------ATHB51      --------->ARR14(2)  --------->AtMYB61  --------------->AtSPL3   tacaatgtatttttcaaaatttcaataatgaaattacataactgaaaatcggctgaaaagtgtcgaccaaaaaattataaattgggaagtaccattttca  16561400         <---------YAB1       <-----------GT1      <---------YAB1    <---------ICU4           --------->AHL20(1)    -------->ATHB1           <---------AHL20(2)    --------->ATHB51         --------->AHL20(2)   <---------YAB1           <---------ATHB12                                                        -   --------->ICU4           <---------ATHB51                                                       <-   --------->AHL20(1)       --------->AHL20(2)                                                 ------   <---------AHL20(2)       <---------AHL20(2)                                                 ======   --------->AHL20(2) --------->LBD16                                                      <---------ARR14(2) ----AGL15            ------>NtERF2                                                  <---------AHL20(2) --->AGL15           <---------ETT(1)                                                --------->AHL20(2) ---->AGL2           <---------LBD16                                             <---------------AGL15 ------>GT1         <---------LBD16                                             ----------------->AGL3 ---->AGL3        <-----------GT1              ---------->DOF2             ---------->DOF2 --------->GLK1(2) ================================================================================================MADS_MADS ---->AGL1    <---------AHL20(2)<---------AHL20(2)                      --------->YAB1---------->DOF2   gtaaaattattactattttttttccggcaaataatttatcgatgtttaaaaaagaaacatgggctcaaacttaagaataaagcccatttaaagaatccta  16561500                                                                 ------------>CBF                                                            --------->At4g35610                                --------->AHL20(2)          <---------At4g35610                                ----------->TBP         --------->ARR14(2)                              <----------DOF2           <---------ARR14(2)                         --                           ------>NtERF2             <---------ANAC58                              --                        <---------ZAT14              --------->ANAC55(2)                         ----                        <---------At4g35610          <---------ANAC58                            ---- --------->DOF2         --------->ZAT14             <---------TOE2(2)                            ---- --------AHL20(2)  <---------MYB52(1)               <---------TOE1(2)                       <-------- >ZmHOX2a(1)    ------>ZmHOX2a(2)                  <-----------GT1  *TSS         --------->At4g35610 ======================HOX2a_HOX2a       ------->TEIL<---------ANAC55(2)      ------>ZmHOX2a(1) -----   ttaaaagcccatatttgatctgttactgcagcctttatatatgaatcgtgttcttacgtttctgcttaacaatttccttcctccgcttcaaacgagtcac  16561600                                   <---------ANAC58                                   <---------ANAC58                                  <---------At4g35610            --------->GLK1(2)     --------->At4g35610            --------->ARR14(2)    <---------ZAT2            <---------ARR14(2)    --------->ZAT2           <---------GLK1(1)     ------->TEIL    <---------REM1(2)         --------->ANAC46  ----------->HVH21           --------->ANAC58  --------->ANAC58         <---------ARR14(2)  --------->ANAC58        <------NtERF2 ---->MYB46(1)           --------->LBD16 ---->MYB83--------->GLK1(1)  --------->ANAC58      <---------ANAC58                            <---- ----->MYB46(3)         --------->DEAR3(1)          <---------ANAC58<---------At5g28300 <-----------GT1 ----->DREB2C(2)       <---------LBD16    <---------ANAC46         <-----------GT1     --------->KAN4(2) ----->DEAR3(1)   <---------ARR14(2)   <---------ANAC58      ----------->GT1    <-------GAMYB   ----- ---HVH21 <------ZmHOX2a(1)--------->ARR14(2)      <-----------------------TaNAC69(2) <----------TaMYB80 ---->DEAR3(2)    --------->ARR14(2)   <---------ANAC58     ------->GAMYB      <---------MYB46(3)  <-   cgactcgacacaggaatccgaattcgccggagacgcagcttgcttcgttgaatagcttacaacgggaaattaccacgaagacggttgtatattccctccg  16561700                     <---------ARR14(2)                     --------->ARR14(2)        --------->MYB59 <-----------GT1        <---------TOE2(3)        <---------TOE1(3) -------HVH21 <---------ANAC58                                                         ----------->GT1 ---->LBD16   <---------ANAC58                                                    ---------->DOF2 --------SPL7 <---------ANAC46 ----------->GT1           ---------->DOF2    <------ZmHOX2a(1)   tcgtacaatttaggttatgtgcgaattcacaaattgaaaatacaagagaaacaatccctaaaatcgatttgattaagaggagcgaaaagaagaaaatcaa  16561800                     --------->GLK1(2)                     --------->ARR14(2)                     <---------ARR14(2)                     ------->TEIL                    <---------CCA1(2)                    <---------GLK1(2)                          ----------->GT1                 --------->HSFB2a(2)                           --------->LBD16                 <---------HSFB2a(2)     <---------YAB1      <---------LBD16        --------->At5g28300   <---------SPL7          <---------AHL20(2)   --------->ZAT18         <-    --------->MYB52(1)       ------>ZmHOX2a(2)  <---------MYB52(1)  ---------->DOF2   <---------LBD16   tatgggaaacggtaatggtctcgaatctcgatcgtactgagttttgattcgtttattgaattatccggtgaaaagagtatgctaatactggggaaaatgt  16561900                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                  <------MYB46(1)                                                  <---------HSFB2a(1)                                                  <------MYB83                                                  --------->HSFB2a(1)                   <---------AHL20(2)                                                  <---------HSFC1(2)                   --------->AHL20(2)                                                  --------->HSFC1(2)               <---------AHL20(2)                                                 ----------->ARR10            <----------DOF2                                             <---------MYB46(3)               <---------DAG2                        ------>MYB83  <---------SPL7 <-------TEIL       --------->ANAC46--------->ATHB12          ---------->DOF2 ---------->DOF2   --------->ALFIN1            --------->O2<---------AHL20(2) --------TOE2(3)        ------>MYB46(1) <---------ZAT14               <---------ALFIN1 <---------AHL20(2)   tgatgtttagatgaaagaaaacgacctacaaagaagatgaagtacggtgggaaggttcgtgttgattcttctccacatgactttttttatttattaggct  16562000                                   <---------LBD16                                   <-----------RAV1(2)                               --------->ARR11(3)                         --------->At5g28300                        <---------ZAT6<------ZmHOX2a(1)                                     <--------                        ----------->GT1                                                  <---------At4g35610                  <---------------AtSPL8                                             <---------YAB1--                  <---------------AtSPL3      ---------->DOF2                      --------->YAB1  <-             <---------ZAT6    <---------ARR11(3)                    <---------------------WRI1    <-      --------------->AGL15   --------->RVE1(1)      <---------------AtSPL8       <---------YAB1  <--   cttcacttctagttagtgtaattgtactgtaaaaatctcaggatgatcaaaagatgaagaacatacaaaacgttgaagattactatgatgatgctgatga  16562100  Previous    Next  AGI:  At5g41350.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to RHB1A (RING-H2 finger B1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G00335.1); similar to RHB1A (RING-H2 finger B1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G00335.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO65940.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 16558690    to: 16561200    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g41360.1    Description:  XPB2 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 2); ATP-dependent helicase. Identical to DNA repair helicase XPB2 (XPB2) [Arabidopsis Thaliana] (GB:Q9FUG4;GB:Q9FN64); similar to XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G41370.1); similar to hypothetical protein OsJ_002992 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13167.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65934.1); similar to hypothetical protein OsI_003293 [Oryza sativa (indica cultivar-group)] (GB:EAY75446.1); contains InterPro domain Restr Range:  from: 16561568    to: 16566508    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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