Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
--------->
REM1(2)
--------->
ALFIN1
<-------
MYC3
------->
MYC3
------->
MYC2
<-------
MYC2
<-------
PIF5
<-------
MYC4
------->
MYC4
------->
PIF5
--------->
PIF3(3)
--------->
O2
<---------
ANAC46
<<<<<<<<<<
HY5
<---------
TGA1a
<---------
PIF3(3)
--------->
TGA1a
<---------
O2
------>
NtERF2
<---------
ALFIN1
----------->
HVH21
----------------->
PIF3(1)
--------->
CCA1(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC58
<---------
GLK1(2)
--------->
YAB1
--------->
ANAC46
<------
MYB83
--------->
MYB52(1)
<---------
ATHB12
--------->
SPL7
<---------
MYB46(3)
--------
------>
MYB83
<---------
ZAT18
<---------
DEAR3(1)
<-------
------>
MYB46(1)
--------->
ALFIN1
--------->
LBD16
<---------
ARR11(3)
--------->
WOX13(1)
<---------
SPL7
<---------
At4g35610
--------->
ARR11(3)
===============================================
MYC_MYB
<---------
DREB2C(2)
<-------
------->
GAMYB
<---------
ANAC58
------>
NtERF2
<---------
DEAR3(2)
--------
--------->
TOE2(3)
<---------
ANAC46
--------->
DEAR3(1)
<---------
ARR14(2)
--------
DOF2
--------->
AtMYB61
<---------
ANAC58
<---------
ATERF1(1)
----------->
ARR10
----
---
ZAT18
--------->
MYB46(3)
<---------
At5g28300
--------->
AtMYB61
<------
MYB46(1)
<--------
cttttgcctcaacgaccaatcaaacgaagtgattttgctaccgtgcgccacgtggagacctccgccgattacagtcggtgagatactcgacggagaatct
16554700
<---------
SPL7
--------->
GLK1(1)
--------->
LBD16
--------->
ANAC46
<---------
LBD16
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
AGP1
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR14(2)
->
GLK1(2)
<---------
AGP1
--------->
SPL7
----
ARR10
<---------
CCA1(2)
---------->
DOF2
--
ARR14(2)
------>
ZmHOX2a(1)
--------->
MYB52(1)
--------->
GLK1(2)
->
ARR14(2)
=====================
HOX2a_HOX2a
<---------
HSFB2a(2)
----->
ETT(2)
<---------
ARR14(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
YAB1
-
GLK1(2)
--------->
GLK1(2)
<---------------
AtSPL3
<---------
ARR14(2)
<---------
TOE2(3)
----
cgaccgttcaattgaagaatcctagatctacggagatcgaacggctcgaactgcgacgaattcgagagagaatcgattaagaaagactcgattccatagt
16554800
--------->
SPL1(2)
--------->
SPL7
<---------
SPL7
------>
ZmHOX2a(2)
--------->
LBD16
=================================
HOX2a_HOX2a
<---------
ANAC58
<---------
GLK1(1)
--------->
ANAC55(2)
<---------
ANAC46
<---------
ANAC46
<------
MYB46(1)
<------
NtERF2
--------->
MYB59
<---------
ANAC46
--------->
MYB46(2)
--------->
ARR11(3)
<---------
ANAC58
--------->
MYB111(1)
--------->
CCA1(2)
<---------
ANAC58
<---------
MYB55(1)
--------->
ARR14(2)
<---------
DEAR3(1)
<--------
P
<---------
MYB52(1)
------->
TEIL
<---------
ANAC55(2)
<---------
LBD16
--------->
ANAC58
<---------
ARR11(3)
--------->
HSFB2a(2)
<-------
--------->
ANAC58
--------->
ARR11(3)
<---------
HSFB2a(2)
--------->
MYB52(1)
<--
<-------
TEIL
<------
ZmHOX2a(2)
<---------
ANAC58
<------
MYB83
<---------
ARR14(2)
<---------
ARR14(2)
----->
ARR11(3)
--------->
ARR11(3)
------>
NtERF2
<---------
MYB52(1)
<------
ZmHOX2a(1)
--------->
ARR14(2)
atctagattcatcgatgagatcacgaacatcgaaggcgcgtgatctagcaggtaggtttccggtacggaggatatagagaagaacggagaacaaatcggg
16554900
-----
--------->
LBD16
<-------
TEIL
------>
NtERF2
---------
<---------
RAP2.6(2)
---------
<---------
LBD16
---------
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ANAC46
<---------
ARR14(2)
<---------
ANAC46
--------->
ANAC58
<------
ZmHOX2a(1)
------------------
<---------
ETT(2)
--------->
CCA1(2)
<---------
ANAC46
<---------
MYB52(1)
<-
<------
ZmHOX2a(2)
<---------
TOE2(3)
--------->
ARR14(2)
<---------
ANAC58
--------->
ARR11(1)
<---------
YAB1
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC58
<---------
GLK1(2)
--
LBD16
--------->
ANAC58
<---------
ANAC46
--------->
GLK1(2)
<---------
TOE2(3)
<---------
ARR14(2)
----
ZmHOX2a(2)
<---------
ANAC58
<---------
GLK1(2)
<---------
TOE1(3)
<---------
HSFB2a(1)
atcacgatcgacgaaacgagttgtctcagtagcgagttgagataggagagaatcggttccggctaggcttaaggtttgcttcgttgtttgaaagattcgg
16555000
------>
NtERF2
----------->
HVH21
--------->
DEAR3(1)
->
NtERF2
--------->
ARR14(2)
>
CCA1(2)
<---------
ARR14(2)
--------->
At4g35610
>
ARR14(1)
--------->
YAB1
--------->
ANAC58
<---------
DAG2
>
GLK1(2)
<-------
TEIL
--------->
TOE1(2)
<----------
DOF2
--->
WRI1
--------->
TOE1(2)
<-------
TEIL
--------->
YAB1
<----------------------
--------
ATERF1(1)
<---------
HSFB2a(1)
------>
ZmHOX2a(2)
--------->
ANAC58
---------->
ID1
cctccgacgttgatggagacaacgttcgattcatgagggatcgtcggaaaattcat
acgagcaaatcagaagacgttcttcgcttttttttttttttttt
16555100
<-----
--------->
ALFIN1
<---------
ANAC46
<---------
ZAT14
<---------
YAB1
<---------
ANAC58
--------->
ZAT14
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
At4g35610
<------
NtERF2
----------->
GT1
<---------
ANAC58
--------->
ANAC58
-------
<---------
At4g35610
*
TSS
<-----------
GT1
--------->
ANAC46
<------
--
ANAC81
--------->
YAB1
----------->
GT1
<------
ZmHOX2a(1)
--------->
ANAC58
---------
ttggcagaggatgataagacggataaacagt
gaaacttcagagaagaggaacagtttttacttgtacaaggctaacacggccactgaagtggatgagatc
16555200
<---------
ANAC58
--------->
YAB1
<---------
AHL20(2)
<---------
ANAC58
<---------
ATHB12
----------->
GT1
<---------
ANAC46
-
ZmHOX2a(2)
<---------
ANAC58
--------->
GLK1(1)
-->
ARR11(3)
<---------
ANAC58
<---------
ARR14(2)
---
ARR11(3)
<---------
ANAC46
--------->
ARR14(2)
--------->
TOE2(3)
----
-->
ARR10
------------>
CBF
<---------
ANAC46
--------->
YAB1
<-------
TEIL
------
atcaaatcaaaacgaacaatgcgtttagtaaattttggctattgagacggatatgtacaatgcgtttataatctaaacgatgcatatagccttcaagaaa
16555300
--------------->
AtSPL8
<---------
ICU4
--------->
ICU4
<---------
ATHB12
--------->
MYB52(1)
--------->
YAB1
<---------
MYB59
<------
MYB46(1)
---
--------->
MYB52(1)
<------
MYB83
--------->
ZAT18
<-----------
GT1
----------->
GT1
--------->
MYB59
<----
------->
GT1
--------->
MYB46(3)
--------->
MYB59
<---------------
AtSPL8
---->
DOF2
<---------
ATHB12
<---------
MYB52(1)
---------->
DOF2
<---------
MYB52(1)
<----
agaaatta
ccgaatcaataaccggtataaaccggtaagagagacttatttgaaattgaaaagactaacaattcggttcggtctaataatgtacacaaacg
16555400
<---------
YAB1
--------->
AHL20(2)
<---------
ARR11(3)
--------->
SPL7
---------->
DOF2
--------->
YAB1
<-----------
HVH21
--------->
At4g35610
--------->
ICU4
------>
SPL7
--------->
AHL20(2)
----------->
GT1
----------->
GT1
<---------
YAB1
-------
HVH21
<-----------
RAV1(2)
<----------
ID1
<-----------
GT1
--------->
YAB1
-----
SPL7
<---------
AHL20(2)
---------->
DOF2
<---------
GLK1(1)
--------->
At4g35610
-------
tccggtccgataaattaaacaggtgaacaaagcacaaagggagaaatagatttcacagttgagttataagcagagataattcatgatcatatacaataaa
16555500
<------
NtERF2
--------->
ANAC46
--------->
ANAC58
------>
NtERF2
--------->
ANAC58
<---------
YAB1
<---------
ATERF1(2)
<---------
ICU4
--------->
ATERF1(2)
--------->
YAB1
<---------
ANAC58
<---------
YAB1
<---------
ANAC58
--------->
YAB1
<---------
AGP1
<---------
ICU4
---------->
DOF2
<---------
ARR11(3)
<---------
YAB1
--------->
AtMYB61
<------
ZmHOX2a(2)
<---------
ICU4
<---------
ANAC46
-------->
P
<---------
ARR14(2)
--------->
YAB1
----------->
RAV1(2)
------>
MYB46(1)
--------->
GLK1(2)
<---------
YAB1
<---------
ICU4
------>
MYB83
--------->
ARR11(3)
--------->
YAB1
------>
ZmHOX2a(1)
--------->
ZAT18
--------->
ARR14(2)
--------->
REM1(1)
<---------
YAB1
------>
ZmHOX2a(1)
-->
AHL20(2)
<---------
ZAT2
------>
ZmHOX2a(2)
----------->
RAV1(1)
--------->
TOE2(3)
--------->
ARR14(2)
acaagtcccctaccaaagctggt
tcaaggatctggtttgccagcaattgcaacatcatcatcatcatcatcctcattatctgagccgtattcctcttcac
16555600
Previous
Next
AGI:
At5g41330.1
Description:
potassium channel tetramerisation domain-containing protein. similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G09030.1); similar to hypothetical protein [Nicotiana tabacum] (GB:BAF62469.1); contains InterPro domain Potassium channel, voltage dependent, Kv, tetramerisation; (InterPro:IPR003131); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210)
Range:
from: 16552567
to: 16555131
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g41340.1
Description:
UBC4 (UBIQUITIN CONJUGATING ENZYME 4); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-21 kDa 1 (UBC4) [Arabidopsis Thaliana] (GB:P42748;GB:Q9FN66); similar to UBC5 (UBIQUITIN-CONJUGATING ENZYME 5), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G63800.1); similar to Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47726.2); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme (InterPro:IPR015581); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:
Range:
from: 16555309
to: 16557358
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version