Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ANAC58 ------->DOF2        --------->ANAC58                                               <---------TOE2(3) ----ID1      ---------->DOF2                    <---------AHL20(2)               ---------->DOF2   caaagctagttttcatcaaagggatgcaattgaagaacatactaaacatatataatcgaaaactgatataaaaaaacataaacacaaaggtttgttttga  16445500                                                                            --------->AHL20(2)               --------->ANAC55(2)                                          <---------AHL20(2)               <---------ANAC55(2)                                          <---------AHL20(1)          --------->YAB1                                                    --------->AHL20(1)         <---------YAB1                              <---------YAB1        --------->AHL20(2)      --------->ICU4                            --------->YAB1             <---------AHL20(2)     <---------MYB59                           --------->ICU4          <---------AHL20(2)     --------->TOE2(3)                        <---------TOE2(3)        --------->AHL20(2)   ---------->ID1           ----------->GT1  --------->YAB1       <---------YAB1      <---------AHL20(2)  <-----------GT1   <---------YAB1          <---------AHL20(2) <----------DOF2    <----------DOF2   gttttgaccttattatcaagtgatgaaagaatgtaaaacttagtttttaatgatgttgataacctcttttgatttaaataaattctttttaatgtgtgat  16445600                                      <---------AHL20(2)                                      --------->AHL20(2)                            <------------CBF                                     --------->AHL20(2)                            --------->ATHB12                                  --------->AHL20(2)                              <---------YAB1                                 <---------AHL20(2)               <-----------RAV1(1)<---------WOX13(1)                             --------->YAB1                      ------->TEIL --------->ATHB12  <----                      <---------TOE2(3)                 --------->ZAT6    --------->ICU4   <---------   ttatgctcaaaactaaatttttctaatgttttcatattatttaattttgcccttgttaactctcatggatgttgccatgttgatttgattgagctttgga  16445700                                                                         <---------ANAC58                                                                         <---------ANAC46                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <---------ANAC55(2)    <----                 <---------AHL20(2)                         --------->ANAC58        --------->ARR11(3)             <---------AHL20(2)                             --------->ANAC58  <---------YAB1    -----     <---------AHL20(2)                         <---------GLK1(1)        <---------ANAC58 ----------- --------CBF<---------AHL20(2)       <----------DOF2     <---------MYB52(1)<---------YAB1 <---------YAB1 -DOF2  <------------------------ANAC81   <------------CBF<--------P     --------->ANAC55(2) --------   ttggaatttttttttttatttttttttttttttttttttctttggattggaattcattcggtaagtaagaatatttcgtgattatagaacttctaattat  16445800                               ---------->DOF2                             --------->YAB1                                        <---------ALFIN1                  --------->LBD16                                               --------->ANAC46                 <---------ANAC58                                             --------->ANAC58                 <---------ANAC46                                             --------->ANAC46        --------->AHL20(1)   --------->AHL20(2)                               --------->ANAC58        <---------AHL20(2)   <---------AHL20(2)                             <---------ALFIN1   --------->AHL20(2)   --------->AHL20(2)                                 ------->GAMYB -----ANAC55(2)  <---------ANAC55(2)        <----------DOF2               <---------ALFIN1 ------>GT1      ----------->GT1--------->DAG2      <-----------GT1<-----------HVH21------>NtERF2 ---->AGL15      <---------ANAC58      <-----------GT1   --------->MYB59 --------->ZAT14   ------->TEIL ->ICU4 --------->AHL20(2)--------->YAB1    <---------DAG2  --------->WRKY18(1) --------->PCF2   gtaaaaaaaataaaataatgcgtgaaaataataaaaagttgttaccctttttttttacttaggtcaagaggtcacaacacacgccccaccttgaatctga  16445900                     <---------ALFIN1                   <---------ALFIN1                                                          --------                   --------->ANAC46                                                          <-------                --------->PCF2                                                             --------->GLK1(2)             <---------ANAC58                                                        ----------->RAV1(1)             <---------ANAC58                                                       --------->ANAC58            <-------TEIL  ----------->HVH21                   -------->P            --------->ANAC58        <---------------AtSPL8                            <---------ARR11(3)        --------->ANAC46        --------------->AtSPL3    --------->WRKY18(1)     --------->GLK1(2)     <-----------HVH21 <--        <---------------AtSPL3   <-----------HVH21        --------->ARR11(3)   --------->ANAC46 <----   gagagagagagaagtacgtccccacaccttgacatggtcatggagcccaagaagaaccaaaatctaccaagtttcttaaacccatcacgacagaatcagg  16446000                                                             <------ZmHOX2a(1)                                                       ---------->DOF2                                                   <------NtERF2  ------->GAMYB                                   <---------ORA47(2) <----------ID1                <---------TOE1(3) --------->ETT(1) ->YAB1            --------->MYB52(1)            <---------DEAR3(1)                          <------- --ICU4     ----------->GT1  ---------->DOF2    --------->ATERF1(1)                        --------->ANAC58 -------WRKY12   <---------MYB52(2)          <---------AtMYB61   >>>>>>>>>TBF1     <------ZmHOX2a(1) --ZmHOX2a(1)<------ZmHOX2a(1) <---------TOE2(3)<---------ORA47(1)     <------ZmHOX2a(1)   --------->ANAC58   acaacgacaagaagaggaaacaaacagaggttaaaggtttcgacattgtggtcggcgaaaagaggaagaagaaggagaatgaagaggaagaccaagaaat  16446100                                         <-----------HVH21                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                ==============================HOX2a_HOX2a                <------ZmHOX2a(1)     <---------ARR14(2)         <---------YAB1               --------->ARR11(3)     <----------DOF2                  <---------ARR11(3)                     <------MYB83  --------->GLK1(2)               ---------->DOF2---------->DOF2             <------MYB46(1)        - --------->ARR14(2)            ------>MYB46(1)--------->TOE1(3)             --------->MYB59         - <---------ARR14(2)            ------>MYB83   --------->TOE2(3)             --------->MYB46(2)<------ <---------GLK1(2)    >>>>>>>>>TBF1   --------->ARR14(2)                <---------ZAT6        ------- --ARR11(3)     ===============================HOX2a_HOX2a         <---------ANAC46   <---------ALFIN1   tcagattctttatgagaaggagaagaagaaaccaaacaaagatcgtcaccttaaagttgaaggaagaggtcgtagagttaggttacctccactctgtgca  16446200                                                                                                   --                                                               <---------ANAC58                   <--                                                               <---------ANAC46                   ---                            <-----------HVH21                  <---------ANAC58                   <-- -------->ANAC58           <------MYB46(1)                  <--------P   <----------CDC5         <--- -------->ANAC58           <------MYB83                   --------->ATHB12                       <--- ---ZAT14                 --------->MYB59                 <---------MYB46(3)                     <--- -->ZAT14         ---------->DOF2                --------->GLK1(2)--------->REM1(1)          <-------   gcaaggatttatcaattgactaaagaattaggtcacaaatcagatggtgagactcttgaatggttgcttcaacatgctgagccatcgatactctctgcta  16446300                                                  <---------At4g35610                                                --------->ANAC58                                                <---------TGA1a                                                --------->ANAC58                                                --------->TGA1a     ----------->GT1                           <---------LBD16 ------->At5g28300                         ------>ZmHOX2a(1) -------------AGL15                    ===================MYC_MYB        <---------ANAC58 ------------>AGL15        <---------MYB52(1)----------->HVH21           <---------ANAC46 -------ZAT6     ------>MYB83          ------->GAMYB                     <---------ANAC58 --------------AGL3       <-------GAMYB--------->AtMYB61           <---------YAB1 --------------AGL1       ================================MYC_MYB <-----------HVH21        <------ZmHOX2a(1) --------------AGL2      <-----------RAV1(1)<-----------HVH21--------->ATHB12      <---------HSFC1(2) --At4g35610     ------>MYB46(1)      --------->MYB46(3)    <---------YAB1         --------->HSFC1(2)   ctgtaaatggtatcaaacccactgagtctgttgtttctcaacctcctctcacggctgatttgatgatttgtcatagcgttgaagaagcttcaaggactca  16446400  Previous    Next  AGI:  At5g41030.1    Description:  TCP family transcription factor, putative. similar to AT-TCP20 (ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF (TCP)-DOMAIN FAMILY PROTEIN 20), transcription factor [Arabidopsis thaliana] (TAIR:AT3G27010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49044.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 16445934    to: 16446665    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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